Wall clock time and date at job start Tue Mar 31 2020 06:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 120.00001 * 2 1 4 4 H 1.48500 * 109.46837 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47121 * 300.00021 * 3 2 1 6 6 H 1.48496 * 109.46935 * 60.00438 * 3 2 1 7 7 C 1.37875 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00511 * 172.92424 * 7 2 1 9 9 C 1.50707 * 119.99627 * 352.92116 * 7 2 1 10 10 C 1.52999 * 115.54809 * 84.53452 * 9 7 2 11 11 N 1.46495 * 109.47512 * 39.67637 * 10 9 7 12 12 C 1.34774 * 120.00565 * 181.16474 * 11 10 9 13 13 O 1.21284 * 119.99456 * 0.02562 * 12 11 10 14 14 C 1.50694 * 120.00804 * 180.02562 * 12 11 10 15 15 H 1.09002 * 110.85533 * 307.35109 * 14 12 11 16 16 C 1.54893 * 110.83820 * 71.35113 * 14 12 11 17 17 C 1.51693 * 102.47507 * 142.53615 * 16 14 12 18 18 C 1.47469 * 125.86082 * 164.54964 * 17 16 14 19 19 O 1.21473 * 120.00320 * 359.71455 * 18 17 16 20 20 O 1.34764 * 120.00156 * 179.71249 * 18 17 16 21 21 N 1.29057 * 108.27223 * 344.28559 * 17 16 14 22 22 O 1.41395 * 112.87919 * 359.90825 * 21 17 16 23 23 C 1.52994 * 117.51627 * 230.22985 * 9 7 2 24 24 C 1.53002 * 117.49929 * 298.86160 * 9 7 2 25 25 H 0.97002 * 119.99520 * 5.02156 * 1 2 3 26 26 H 1.09004 * 109.47073 * 279.68065 * 10 9 7 27 27 H 1.09002 * 109.46993 * 159.68217 * 10 9 7 28 28 H 0.97001 * 120.00266 * 1.17067 * 11 10 9 29 29 H 1.09000 * 110.90909 * 24.25962 * 16 14 12 30 30 H 1.08999 * 110.73959 * 260.73682 * 16 14 12 31 31 H 0.96691 * 116.99956 * 179.97438 * 20 18 17 32 32 H 1.09001 * 117.50270 * 214.96861 * 23 9 7 33 33 H 1.09001 * 117.50066 * 359.97438 * 23 9 7 34 34 H 1.08998 * 117.49683 * 359.97438 * 24 9 7 35 35 H 1.08997 * 117.49814 * 144.97450 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0784 -1.1976 -0.1157 9 6 1.2596 -2.4942 0.1597 10 6 0.6733 -3.0816 -1.1257 11 7 1.6222 -2.8934 -2.2258 12 6 1.3073 -3.3140 -3.4669 13 8 0.2380 -3.8480 -3.6730 14 6 2.2835 -3.1209 -4.5985 15 1 2.6034 -2.0808 -4.6618 16 6 3.4967 -4.0721 -4.4479 17 6 3.7853 -4.4650 -5.8844 18 6 5.0231 -5.0994 -6.3745 19 8 5.9262 -5.3468 -5.6008 20 8 5.1522 -5.4046 -7.6807 21 7 2.7594 -4.1538 -6.6029 22 8 1.7186 -3.5642 -5.8490 23 6 1.7703 -3.4759 1.2162 24 6 0.4721 -2.7022 1.4549 25 1 -0.4849 0.8369 -0.0735 26 1 -0.2626 -2.5755 -1.3626 27 1 0.4854 -4.1462 -0.9860 28 1 2.4773 -2.4660 -2.0610 29 1 3.2338 -4.9467 -3.8529 30 1 4.3468 -3.5473 -4.0120 31 1 5.9818 -5.8190 -7.9547 32 1 1.6886 -4.5403 0.9957 33 1 2.6456 -3.1817 1.7954 34 1 0.4931 -1.8988 2.1912 35 1 -0.4639 -3.2572 1.3912 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574480563.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:56 Heat of formation + Delta-G solvation = -94.884865 kcal Electronic energy + Delta-G solvation = -21785.322392 eV Core-core repulsion = 18171.874477 eV Total energy + Delta-G solvation = -3613.447915 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.13493 -41.10631 -40.01240 -38.41154 -37.34520 -35.13269 -34.47246 -33.98812 -32.33955 -28.26950 -27.33180 -26.50499 -25.21433 -22.92042 -21.67346 -21.54257 -21.13590 -19.38383 -18.88138 -18.61025 -17.90949 -17.09499 -17.03814 -16.76542 -16.58938 -16.42375 -15.85546 -15.35548 -14.86250 -14.69448 -14.44037 -14.35475 -13.97563 -13.78234 -13.49087 -13.15175 -12.91085 -12.82461 -12.76186 -12.43152 -12.28693 -12.18142 -11.99595 -11.54607 -11.35391 -10.87073 -10.71838 -10.45155 -10.16981 -9.76865 -8.08631 -6.22643 -0.53425 0.96400 1.43804 1.45186 1.49909 1.51111 1.57501 1.62304 2.39380 2.45377 2.90841 3.11493 3.20499 3.45296 3.58422 3.68096 3.87628 4.18930 4.27033 4.42190 4.51671 4.53946 4.69633 4.73888 5.02894 5.05447 5.21373 5.28856 5.43849 5.59887 5.65089 5.69497 5.79133 6.38280 6.65428 6.73589 6.87287 7.23402 7.48647 8.98867 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.019533 B = 0.004205 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.137886 B = 6657.151536 C = 6921.860025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.031 3.969 3 Si 0.946 3.054 4 H -0.256 1.256 5 H -0.288 1.288 6 H -0.292 1.292 7 C -0.504 4.504 8 H 0.072 0.928 9 C 0.006 3.994 10 C 0.176 3.824 11 N -0.676 5.676 12 C 0.509 3.491 13 O -0.581 6.581 14 C 0.029 3.971 15 H 0.149 0.851 16 C -0.114 4.114 17 C 0.070 3.930 18 C 0.579 3.421 19 O -0.498 6.498 20 O -0.490 6.490 21 N -0.226 5.226 22 O -0.181 6.181 23 C -0.178 4.178 24 C -0.165 4.165 25 H 0.258 0.742 26 H 0.030 0.970 27 H 0.047 0.953 28 H 0.417 0.583 29 H 0.121 0.879 30 H 0.160 0.840 31 H 0.447 0.553 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.865 -7.699 -9.848 17.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.170 4.170 3 Si 0.772 3.228 4 H -0.179 1.179 5 H -0.214 1.214 6 H -0.219 1.219 7 C -0.541 4.541 8 H 0.091 0.909 9 C 0.005 3.995 10 C 0.052 3.948 11 N -0.327 5.327 12 C 0.293 3.707 13 O -0.462 6.462 14 C -0.033 4.033 15 H 0.166 0.834 16 C -0.153 4.153 17 C -0.123 4.123 18 C 0.419 3.581 19 O -0.383 6.383 20 O -0.305 6.305 21 N 0.030 4.970 22 O -0.202 6.202 23 C -0.215 4.215 24 C -0.204 4.204 25 H 0.067 0.933 26 H 0.048 0.952 27 H 0.065 0.935 28 H 0.256 0.744 29 H 0.139 0.861 30 H 0.177 0.823 31 H 0.312 0.688 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.270 -7.846 -10.637 17.370 hybrid contribution 0.717 1.168 0.902 1.641 sum 11.987 -6.677 -9.735 16.824 Atomic orbital electron populations 1.70117 1.07471 1.27235 1.49393 1.25666 0.95222 1.01921 0.94205 0.85701 0.79867 0.80294 0.76924 1.17940 1.21425 1.21856 1.20650 0.93458 0.89036 1.51002 0.90947 1.19108 0.99351 0.94752 0.86308 1.20623 0.90939 0.96834 0.86413 1.45727 1.21787 1.58616 1.06604 1.20319 0.87295 0.78944 0.84121 1.90703 1.26055 1.45441 1.83973 1.23845 0.92337 1.02877 0.84237 0.83392 1.22909 0.98503 1.01256 0.92636 1.25022 0.93551 0.98168 0.95580 1.18769 0.83370 0.74813 0.81150 1.91005 1.39824 1.49938 1.57512 1.84606 1.48059 1.73790 1.24015 1.78604 0.96142 1.03485 1.18815 1.91432 1.26364 1.74968 1.27474 1.23095 0.97122 0.96316 1.04918 1.22439 0.94100 1.01571 1.02240 0.93323 0.95163 0.93509 0.74446 0.86071 0.82257 0.68801 0.89187 0.89505 0.91954 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.76 12.97 21.45 0.28 -48.48 16 2 C 0.03 1.55 5.39 84.65 0.46 2.00 16 3 Si 0.95 39.28 29.55 68.60 2.03 41.30 16 4 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 5 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.29 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.50 -23.26 7.44 25.60 0.19 -23.07 16 8 H 0.07 3.14 7.82 -2.91 -0.02 3.12 16 9 C 0.01 0.24 1.70 -52.93 -0.09 0.15 16 10 C 0.18 7.49 5.75 86.38 0.50 7.99 16 11 N -0.68 -24.22 5.33 -463.07 -2.47 -26.68 16 12 C 0.51 18.30 7.13 87.66 0.62 18.92 16 13 O -0.58 -26.52 16.59 14.97 0.25 -26.28 16 14 C 0.03 0.76 4.24 30.49 0.13 0.89 16 15 H 0.15 3.16 8.14 -2.39 -0.02 3.14 16 16 C -0.11 -2.22 6.44 30.81 0.20 -2.02 16 17 C 0.07 1.46 7.30 45.72 0.33 1.79 16 18 C 0.58 9.74 8.34 70.25 0.59 10.32 16 19 O -0.50 -9.90 17.74 19.92 0.35 -9.55 16 20 O -0.49 -5.65 13.43 -56.75 -0.76 -6.42 16 21 N -0.23 -6.05 12.51 -42.36 -0.53 -6.58 16 22 O -0.18 -5.86 11.82 -20.31 -0.24 -6.10 16 23 C -0.18 -6.58 9.88 30.59 0.30 -6.28 16 24 C -0.17 -7.15 9.51 30.60 0.29 -6.86 16 25 H 0.26 13.54 8.32 -92.71 -0.77 12.77 16 26 H 0.03 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.05 1.90 7.95 -2.39 -0.02 1.88 16 28 H 0.42 13.11 7.46 -92.71 -0.69 12.42 16 29 H 0.12 2.38 7.91 -2.39 -0.02 2.36 16 30 H 0.16 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.45 0.07 9.11 -74.06 -0.67 -0.60 16 32 H 0.09 2.93 8.08 -2.39 -0.02 2.91 16 33 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 34 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 35 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -69.10 319.88 2.21 -66.89 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -0.21 Total: 18.05 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 3.52 Total: 3.84 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -2.72 Total: -81.74 kcal Atomic # 8 Polarization: -47.94 SS G_CDS: -0.40 Total: -48.34 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.30 kcal Total: -69.10 2.21 -66.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480563.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.996 kcal (2) G-P(sol) polarization free energy of solvation -69.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds