Wall clock time and date at job start Tue Mar 31 2020 06:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47729 * 2 1 4 4 C 1.50703 * 109.47113 * 239.99293 * 2 1 3 5 5 H 1.07994 * 120.00054 * 240.00177 * 4 2 1 6 6 C 1.37875 * 119.99702 * 60.00400 * 4 2 1 7 7 N 1.31515 * 120.00128 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00064 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47242 * 89.99822 * 8 6 4 10 10 H 1.48506 * 109.47228 * 210.00202 * 8 6 4 11 11 H 1.48504 * 109.46771 * 329.99870 * 8 6 4 12 12 C 1.50705 * 109.47060 * 119.99975 * 2 1 3 13 13 O 1.20822 * 120.00423 * 119.99559 * 12 2 1 14 14 O 1.34237 * 119.99579 * 299.99592 * 12 2 1 15 15 C 1.45201 * 116.99802 * 179.97438 * 14 12 2 16 16 H 1.09009 * 109.46855 * 30.00574 * 15 14 12 17 17 C 1.52998 * 109.47568 * 270.00465 * 15 14 12 18 18 C 1.50701 * 109.47061 * 150.00180 * 15 14 12 19 19 C 1.35173 * 125.60997 * 220.32080 * 18 15 14 20 20 C 1.40302 * 107.12666 * 180.14445 * 19 18 15 21 21 C 1.36646 * 106.70095 * 359.60845 * 20 19 18 22 22 C 1.46475 * 125.99349 * 180.20757 * 21 20 19 23 23 O 1.21624 * 120.00130 * 359.97438 * 22 21 20 24 24 O 1.34897 * 119.99649 * 180.02562 * 22 21 20 25 25 O 1.33906 * 125.60964 * 40.02480 * 18 15 14 26 26 H 1.09005 * 109.47247 * 300.00603 * 1 2 3 27 27 H 1.09007 * 109.47109 * 59.99859 * 1 2 3 28 28 H 1.08996 * 109.47471 * 180.02562 * 1 2 3 29 29 H 0.96999 * 120.00577 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.47399 * 179.97438 * 17 15 14 31 31 H 1.09005 * 109.46660 * 300.00149 * 17 15 14 32 32 H 1.09006 * 109.47107 * 59.99602 * 17 15 14 33 33 H 1.07998 * 126.43598 * 0.03557 * 19 18 15 34 34 H 1.08002 * 126.65185 * 179.87548 * 20 19 18 35 35 H 0.96704 * 116.99839 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2304 5 1 2.6531 -1.5886 -1.1312 6 6 1.6992 -0.2396 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3212 -1.1207 -4.0078 9 1 1.3426 -2.1620 -4.4117 10 1 2.4866 -0.1418 -5.1123 11 1 3.6292 -1.7587 -3.7120 12 6 2.0323 -0.7104 1.2305 13 8 2.7268 -1.6928 1.1198 14 8 1.7080 -0.2517 2.4497 15 6 2.2266 -0.9862 3.5898 16 1 3.1795 -1.4442 3.3240 17 6 1.2308 -2.0765 3.9900 18 6 2.4287 -0.0413 4.7463 19 6 3.4761 -0.0558 5.6007 20 6 3.2716 0.9819 6.5225 21 6 2.0990 1.5909 6.1745 22 6 1.4872 2.7340 6.8563 23 8 2.0307 3.2251 7.8272 24 8 0.3206 3.2413 6.4078 25 8 1.6031 0.9542 5.0932 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 0.7090 1.1612 -3.4844 30 1 1.6203 -2.6282 4.8456 31 1 0.2780 -1.6185 4.2557 32 1 1.0846 -2.7599 3.1535 33 1 4.3122 -0.7391 5.5790 34 1 3.9182 1.2504 7.3449 35 1 -0.0446 3.9955 6.8905 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592221900.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:05 Heat of formation + Delta-G solvation = -166.419477 kcal Electronic energy + Delta-G solvation = -21736.004254 eV Core-core repulsion = 18087.161614 eV Total energy + Delta-G solvation = -3648.842640 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.103 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.98418 -40.17670 -39.79558 -36.44130 -36.22369 -33.96233 -33.52676 -32.54248 -30.55562 -29.39859 -25.35725 -25.20736 -23.80467 -22.40835 -21.73528 -20.63940 -19.73104 -18.70465 -17.87993 -17.04302 -16.78077 -16.40239 -16.06578 -15.56538 -15.23905 -14.83011 -14.12484 -13.82853 -13.74538 -13.40338 -13.20901 -13.07347 -12.86275 -12.53565 -12.04374 -11.90592 -11.61599 -11.40058 -11.17813 -11.09144 -10.83504 -10.73448 -10.47348 -10.32745 -10.25512 -10.09724 -9.27011 -9.08819 -8.88531 -8.48680 -6.13916 -4.20096 0.56968 1.93568 2.17264 2.64261 2.95643 3.16526 3.22867 3.28222 3.34347 3.42021 4.33585 4.41369 4.59059 4.88851 4.95678 5.04903 5.19476 5.27241 5.38058 5.45613 5.59017 5.73413 5.94390 6.04273 6.07100 6.12114 6.62712 6.67860 6.82509 6.84075 7.06237 7.38597 7.54175 7.70290 7.89840 8.08840 8.70386 8.88267 9.45746 10.93385 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.026768 B = 0.003724 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.773715 B = 7516.415705 C = 8050.419628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.058 3.942 3 H 0.066 0.934 4 C -0.515 4.515 5 H 0.076 0.924 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.905 3.095 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.272 1.272 12 C 0.468 3.532 13 O -0.513 6.513 14 O -0.354 6.354 15 C 0.153 3.847 16 H 0.118 0.882 17 C -0.166 4.166 18 C 0.054 3.946 19 C -0.217 4.217 20 C -0.098 4.098 21 C -0.076 4.076 22 C 0.576 3.424 23 O -0.500 6.500 24 O -0.500 6.500 25 O -0.129 6.129 26 H 0.025 0.975 27 H 0.097 0.903 28 H 0.032 0.968 29 H 0.264 0.736 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.165 0.835 34 H 0.167 0.833 35 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.229 0.608 17.239 17.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.040 3.960 3 H 0.083 0.917 4 C -0.552 4.552 5 H 0.094 0.906 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.733 3.267 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.313 3.687 13 O -0.400 6.400 14 O -0.272 6.272 15 C 0.097 3.903 16 H 0.135 0.865 17 C -0.223 4.223 18 C 0.000 4.000 19 C -0.236 4.236 20 C -0.118 4.118 21 C -0.126 4.126 22 C 0.421 3.579 23 O -0.390 6.390 24 O -0.311 6.311 25 O -0.023 6.023 26 H 0.044 0.956 27 H 0.115 0.885 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.183 0.817 34 H 0.185 0.815 35 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 0.382 0.311 16.988 16.995 hybrid contribution 0.282 -0.014 -0.348 0.448 sum 0.664 0.297 16.640 16.656 Atomic orbital electron populations 1.21741 0.95425 1.00110 1.01903 1.18805 0.95002 0.97038 0.85200 0.91677 1.21119 1.32128 1.13307 0.88695 0.90572 1.24937 0.94872 0.94978 0.99150 1.69877 1.36403 1.22695 1.23944 0.86370 0.79439 0.79219 0.81721 1.20502 1.21115 1.19655 1.25518 0.76255 0.83243 0.83683 1.90496 1.36424 1.26701 1.86336 1.86825 1.70083 1.55344 1.14965 1.21045 1.00750 0.88134 0.80326 0.86484 1.22211 0.99466 0.97684 1.02986 1.22852 0.89934 0.89801 0.97401 1.21590 1.00945 1.03092 0.97965 1.21946 0.94975 0.94599 1.00247 1.20652 0.98217 0.99731 0.94001 1.18822 0.78486 0.80246 0.80393 1.90995 1.63143 1.59078 1.25819 1.84717 1.36861 1.50154 1.59412 1.84201 1.44219 1.36341 1.37574 0.95643 0.88495 0.94919 0.92626 0.90600 0.91021 0.90228 0.81725 0.81548 0.72233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 8.90 37.15 0.33 -2.79 16 2 C 0.06 1.46 2.74 -92.92 -0.25 1.20 16 3 H 0.07 1.69 8.14 -51.93 -0.42 1.27 16 4 C -0.51 -14.12 8.37 -34.44 -0.29 -14.41 16 5 H 0.08 2.16 6.76 -52.49 -0.35 1.81 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.49 11.32 55.43 0.63 -23.86 16 8 Si 0.91 21.11 29.54 -169.99 -5.02 16.09 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 12 C 0.47 10.56 7.22 36.01 0.26 10.82 16 13 O -0.51 -12.23 14.68 -18.75 -0.28 -12.51 16 14 O -0.35 -6.87 9.77 -41.46 -0.40 -7.28 16 15 C 0.15 2.32 3.03 -27.88 -0.08 2.24 16 16 H 0.12 1.73 7.14 -51.92 -0.37 1.36 16 17 C -0.17 -2.13 9.53 37.16 0.35 -1.77 16 18 C 0.05 0.75 6.21 -35.40 -0.22 0.53 16 19 C -0.22 -2.45 10.76 -39.90 -0.43 -2.88 16 20 C -0.10 -1.10 10.62 -39.38 -0.42 -1.52 16 21 C -0.08 -1.00 7.18 -36.84 -0.26 -1.26 16 22 C 0.58 7.00 8.30 34.05 0.28 7.29 16 23 O -0.50 -6.70 17.65 -19.36 -0.34 -7.04 16 24 O -0.50 -5.00 13.44 -42.47 -0.57 -5.57 16 25 O -0.13 -1.96 10.67 -0.81 -0.01 -1.97 16 26 H 0.02 0.52 8.11 -51.93 -0.42 0.10 16 27 H 0.10 2.44 6.07 -51.93 -0.32 2.13 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.26 6.89 8.31 -40.82 -0.34 6.56 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.17 1.48 8.06 -52.49 -0.42 1.05 16 35 H 0.42 1.83 9.11 45.56 0.42 2.25 16 LS Contribution 318.90 15.07 4.81 4.81 Total: -1.00 -31.98 318.90 -5.16 -37.13 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -3.14 Total: 1.17 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -0.83 Total: -0.97 kcal Atomic # 7 Polarization: -24.49 SS G_CDS: 0.63 Total: -23.86 kcal Atomic # 8 Polarization: -32.77 SS G_CDS: -1.60 Total: -34.37 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.98 -5.16 -37.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221900.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.286 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds