Wall clock time and date at job start Tue Mar 31 2020 05:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.40304 * 126.64790 * 2 1 4 4 C 1.35173 * 107.12556 * 179.97438 * 3 2 1 5 5 C 1.50697 * 125.60835 * 179.97438 * 4 3 2 6 6 O 1.45199 * 109.46937 * 90.00353 * 5 4 3 7 7 C 1.34234 * 116.99947 * 179.97438 * 6 5 4 8 8 O 1.20822 * 120.00090 * 0.02562 * 7 6 5 9 9 C 1.50702 * 119.99997 * 179.72219 * 7 6 5 10 10 C 1.52992 * 109.47263 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.47263 * 179.97438 * 10 9 7 12 12 H 1.07990 * 119.99977 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00024 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00107 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00277 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47227 * 89.99742 * 15 13 11 17 17 H 1.48496 * 109.47434 * 210.00174 * 15 13 11 18 18 H 1.48507 * 109.46769 * 330.00276 * 15 13 11 19 19 O 1.33911 * 108.78116 * 0.26359 * 4 3 2 20 20 C 1.34939 * 109.37781 * 359.56492 * 19 4 3 21 21 C 1.46471 * 125.99470 * 180.13473 * 20 19 4 22 22 O 1.21625 * 120.00252 * 180.34602 * 21 20 19 23 23 O 1.34902 * 119.99911 * 0.34964 * 21 20 19 24 24 H 1.08997 * 109.47287 * 90.02203 * 1 2 3 25 25 H 1.08996 * 109.47183 * 210.03036 * 1 2 3 26 26 H 1.09007 * 109.46991 * 330.02033 * 1 2 3 27 27 H 1.07997 * 126.44127 * 359.97438 * 3 2 1 28 28 H 1.08997 * 109.47315 * 330.00538 * 5 4 3 29 29 H 1.09002 * 109.47266 * 209.99738 * 5 4 3 30 30 H 1.09001 * 109.47201 * 300.00712 * 9 7 6 31 31 H 1.09001 * 109.46880 * 60.00295 * 9 7 6 32 32 H 1.09001 * 109.47602 * 300.00478 * 10 9 7 33 33 H 1.09001 * 109.46922 * 60.00333 * 10 9 7 34 34 H 0.97000 * 120.00437 * 180.02562 * 14 13 11 35 35 H 0.96697 * 116.99614 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3445 1.1257 0.0000 4 6 3.6185 0.6740 0.0006 5 6 4.8549 1.5355 0.0002 6 8 5.2518 1.8131 1.3691 7 6 6.3439 2.5735 1.5447 8 8 6.9479 2.9937 0.5864 9 6 6.8126 2.9089 2.9372 10 6 8.0677 3.7801 2.8569 11 6 8.5360 4.1160 4.2493 12 1 7.9931 3.7448 5.1058 13 6 9.6577 4.8972 4.4297 14 7 10.3186 5.3497 3.3866 15 14 10.2387 5.3130 6.1557 16 1 11.1920 4.2736 6.6209 17 1 10.9143 6.6353 6.1455 18 1 9.0717 5.3603 7.0728 19 8 3.6012 -0.6650 -0.0049 20 6 2.3226 -1.0963 0.0006 21 6 1.8856 -2.4943 0.0000 22 8 0.6989 -2.7605 -0.0010 23 8 2.7995 -3.4866 0.0007 24 1 -0.3634 -0.0004 -1.0276 25 1 -0.3633 -0.8897 0.5143 26 1 -0.3633 0.8902 0.5136 27 1 2.0304 2.1590 -0.0004 28 1 4.6443 2.4731 -0.5142 29 1 5.6620 1.0127 -0.5130 30 1 6.0271 3.4502 3.4645 31 1 7.0432 1.9889 3.4743 32 1 8.8530 3.2384 2.3297 33 1 7.8375 4.7002 2.3196 34 1 11.1080 5.8990 3.5134 35 1 2.4631 -4.3932 -0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600213892.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:16 Heat of formation + Delta-G solvation = -173.392636 kcal Electronic energy + Delta-G solvation = -20792.352145 eV Core-core repulsion = 17143.207126 eV Total energy + Delta-G solvation = -3649.145019 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.103 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.18332 -40.32394 -40.06557 -36.66414 -36.41631 -34.50813 -33.64473 -32.17602 -31.12584 -28.31476 -27.83802 -25.86248 -23.33331 -22.30201 -21.81926 -20.15533 -19.96119 -18.77431 -17.84203 -17.58773 -16.93776 -16.53682 -16.34585 -15.95557 -15.48797 -14.79837 -14.48939 -14.16788 -13.98834 -13.68667 -13.49059 -13.26276 -12.99079 -12.59738 -12.43321 -12.30084 -12.06349 -12.03277 -11.26650 -11.13256 -10.98884 -10.67674 -10.64997 -10.16499 -10.10301 -10.02029 -9.66697 -9.23292 -9.02284 -8.41138 -6.04986 -4.10103 0.35181 1.66436 1.99506 2.45751 2.66898 2.73722 3.21272 3.29840 3.36424 3.39357 4.13704 4.29830 4.41974 4.67008 4.89213 4.94773 4.97938 5.15531 5.30664 5.32206 5.34277 5.46304 5.62176 5.69150 5.87233 6.04964 6.06304 6.12066 6.47694 6.50461 6.79214 7.40251 7.61909 7.67736 7.93611 8.12775 8.31766 8.96839 9.54308 11.05978 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.033133 B = 0.002619 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.869892 B =10688.930849 C =10837.129370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.067 4.067 3 C -0.196 4.196 4 C 0.041 3.959 5 C 0.137 3.863 6 O -0.360 6.360 7 C 0.461 3.539 8 O -0.501 6.501 9 C -0.102 4.102 10 C 0.033 3.967 11 C -0.529 4.529 12 H 0.059 0.941 13 C 0.059 3.941 14 N -0.889 5.889 15 Si 0.896 3.104 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.273 1.273 19 O -0.141 6.141 20 C -0.073 4.073 21 C 0.575 3.425 22 O -0.494 6.494 23 O -0.503 6.503 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.166 0.834 28 H 0.109 0.891 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.027 0.973 33 H 0.027 0.973 34 H 0.262 0.738 35 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.876 -13.222 -8.124 24.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.069 4.069 3 C -0.215 4.215 4 C -0.011 4.011 5 C 0.063 3.937 6 O -0.279 6.279 7 C 0.304 3.696 8 O -0.386 6.386 9 C -0.139 4.139 10 C -0.005 4.005 11 C -0.568 4.568 12 H 0.077 0.923 13 C -0.143 4.143 14 N -0.528 5.528 15 Si 0.724 3.276 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.198 1.198 19 O -0.036 6.036 20 C -0.123 4.123 21 C 0.419 3.581 22 O -0.384 6.384 23 O -0.315 6.315 24 H 0.098 0.902 25 H 0.105 0.895 26 H 0.094 0.906 27 H 0.184 0.816 28 H 0.127 0.873 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -18.460 -12.870 -8.503 24.056 hybrid contribution 0.195 -0.260 0.710 0.781 sum -18.265 -13.130 -7.793 23.806 Atomic orbital electron populations 1.20516 0.87570 1.04149 1.03296 1.20680 0.97792 0.90464 0.97997 1.21606 0.90913 1.00638 1.08345 1.22373 0.96621 0.80400 1.01750 1.21114 0.91544 0.97214 0.83803 1.86658 1.45962 1.66264 1.29042 1.24907 0.76248 0.73815 0.94582 1.90658 1.54868 1.49859 1.43263 1.21822 1.01948 1.03075 0.87104 1.19040 0.89424 0.94363 0.97626 1.21141 1.11365 1.32289 0.91968 0.92263 1.25018 0.96504 0.95760 0.97022 1.69987 1.18554 1.34895 1.29329 0.86534 0.78923 0.77775 0.84398 1.20583 1.21171 1.19768 1.84114 1.27730 1.21763 1.70034 1.20397 0.82090 0.91580 1.18209 1.18785 0.83209 0.83517 0.72570 1.90974 1.17150 1.83191 1.47126 1.84694 1.41606 1.19732 1.85438 0.90239 0.89508 0.90597 0.81602 0.87264 0.88939 0.88687 0.88736 0.95509 0.95480 0.92801 0.72169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 9.81 36.01 0.35 -0.44 16 2 C -0.07 -0.70 6.20 -104.42 -0.65 -1.35 16 3 C -0.20 -2.00 10.72 -39.90 -0.43 -2.43 16 4 C 0.04 0.49 6.95 -35.40 -0.25 0.25 16 5 C 0.14 1.71 5.99 36.00 0.22 1.92 16 6 O -0.36 -5.63 10.20 -39.27 -0.40 -6.03 16 7 C 0.46 8.56 7.96 36.01 0.29 8.84 16 8 O -0.50 -10.67 15.73 -18.75 -0.29 -10.97 16 9 C -0.10 -2.00 5.75 -27.89 -0.16 -2.16 16 10 C 0.03 0.84 4.26 -27.89 -0.12 0.72 16 11 C -0.53 -14.53 9.11 -34.44 -0.31 -14.85 16 12 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 15 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 O -0.14 -1.82 10.67 4.74 0.05 -1.77 16 20 C -0.07 -0.85 7.18 -36.85 -0.26 -1.12 16 21 C 0.57 6.05 8.30 34.05 0.28 6.33 16 22 O -0.49 -5.68 15.53 -19.36 -0.30 -5.98 16 23 O -0.50 -4.14 13.44 -42.49 -0.57 -4.71 16 24 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.09 0.77 6.45 -51.93 -0.33 0.44 16 26 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 27 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 28 H 0.11 1.17 8.13 -51.93 -0.42 0.75 16 29 H 0.09 1.12 8.13 -51.93 -0.42 0.70 16 30 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 31 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 32 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 33 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.42 1.16 9.11 45.56 0.42 1.57 16 LS Contribution 322.13 15.07 4.85 4.85 Total: -1.00 -34.10 322.13 -5.35 -39.45 By element: Atomic # 1 Polarization: 0.86 SS G_CDS: -3.26 Total: -2.40 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -1.14 Total: -2.71 kcal Atomic # 7 Polarization: -26.63 SS G_CDS: 0.74 Total: -25.89 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -1.52 Total: -29.46 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.10 -5.35 -39.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600213892.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.943 kcal (2) G-P(sol) polarization free energy of solvation -34.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds