Wall clock time and date at job start Tue Mar 31 2020 05:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.33631 * 125.80358 * 2 1 4 4 C 1.34222 * 110.92019 * 180.16357 * 3 2 1 5 5 C 1.50697 * 125.42868 * 179.88019 * 4 3 2 6 6 O 1.45199 * 109.46937 * 269.69299 * 5 4 3 7 7 C 1.34234 * 116.99947 * 179.97438 * 6 5 4 8 8 O 1.20822 * 120.00090 * 0.02562 * 7 6 5 9 9 C 1.50702 * 119.99997 * 179.72219 * 7 6 5 10 10 C 1.52992 * 109.47263 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.47263 * 179.97438 * 10 9 7 12 12 H 1.07990 * 119.99977 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00024 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00107 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00277 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46991 * 59.99869 * 15 13 11 17 17 H 1.48497 * 109.47469 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46715 * 300.00449 * 15 13 11 19 19 C 1.34158 * 109.14515 * 359.61500 * 4 3 2 20 20 C 1.36493 * 125.80770 * 179.74609 * 2 1 3 21 21 C 1.47224 * 127.20426 * 359.96983 * 20 2 1 22 22 O 1.21538 * 119.99792 * 0.02562 * 21 20 2 23 23 O 1.34778 * 120.00184 * 180.02562 * 21 20 2 24 24 H 1.09005 * 109.46441 * 270.26442 * 1 2 3 25 25 H 1.08996 * 109.47048 * 30.25575 * 1 2 3 26 26 H 1.08996 * 109.47047 * 150.26218 * 1 2 3 27 27 H 1.08997 * 109.47315 * 149.69483 * 5 4 3 28 28 H 1.09002 * 109.47266 * 29.68684 * 5 4 3 29 29 H 1.09001 * 109.47201 * 300.00712 * 9 7 6 30 30 H 1.09001 * 109.46880 * 60.00295 * 9 7 6 31 31 H 1.09001 * 109.47602 * 300.00478 * 10 9 7 32 32 H 1.09001 * 109.46922 * 60.00333 * 10 9 7 33 33 H 0.97000 * 120.00437 * 180.02562 * 14 13 11 34 34 H 1.07999 * 127.02517 * 180.25583 * 19 4 3 35 35 H 0.96699 * 116.99611 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0838 0.0000 4 6 3.5860 0.7390 -0.0036 5 6 4.7456 1.7014 -0.0072 6 8 5.1188 2.0043 -1.3773 7 6 6.1427 2.8538 -1.5565 8 8 6.7085 3.3281 -0.6001 9 6 6.5907 3.2105 -2.9504 10 6 7.7647 4.1886 -2.8741 11 6 8.2131 4.5449 -4.2681 12 1 7.7108 4.1169 -5.1228 13 6 9.2648 5.4173 -4.4521 14 7 9.8769 5.9382 -3.4111 15 14 9.8203 5.8595 -6.1799 16 1 8.6958 6.4931 -6.9143 17 1 10.9598 6.8088 -6.1058 18 1 10.2461 4.6286 -6.8931 19 6 3.6857 -0.5988 0.0025 20 6 2.3056 -1.1069 0.0049 21 6 1.8755 -2.5149 0.0118 22 8 0.6913 -2.7885 0.0131 23 8 2.7948 -3.5004 0.0166 24 1 -0.3632 0.0047 1.0277 25 1 -0.3633 0.8876 -0.5178 26 1 -0.3633 -0.8923 -0.5097 27 1 5.5933 1.2509 0.5091 28 1 4.4566 2.6206 0.5022 29 1 6.9033 2.3071 -3.4740 30 1 5.7653 3.6756 -3.4895 31 1 7.4516 5.0920 -2.3507 32 1 8.5902 3.7240 -2.3350 33 1 10.6166 6.5523 -3.5405 34 1 4.5939 -1.1833 0.0055 35 1 2.4642 -4.4091 0.0206 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600853329.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:40 Heat of formation + Delta-G solvation = -176.255853 kcal Electronic energy + Delta-G solvation = -20744.497072 eV Core-core repulsion = 17095.227895 eV Total energy + Delta-G solvation = -3649.269177 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.05610 -40.20185 -40.02829 -36.47186 -36.34449 -33.63030 -33.52739 -32.86950 -31.20610 -29.36906 -26.41323 -25.47367 -24.10642 -22.27004 -21.98193 -19.94670 -19.84218 -18.45011 -17.54989 -17.43277 -16.79316 -16.35919 -16.17257 -15.92526 -15.64962 -15.38590 -14.49248 -14.19478 -14.03519 -13.49262 -13.41621 -13.32187 -13.13473 -12.49992 -12.39703 -12.28331 -11.99057 -11.91326 -11.25133 -10.99948 -10.96201 -10.69057 -10.59779 -10.27523 -10.08268 -10.04496 -9.65167 -9.23256 -8.92391 -8.39899 -6.03895 -4.09068 0.74875 1.38788 2.17016 2.65885 2.70610 2.75610 3.22476 3.31602 3.36470 3.38828 4.00856 4.29874 4.42702 4.70361 4.80436 4.94158 5.03878 5.07035 5.14291 5.25997 5.31553 5.49743 5.53661 5.66716 5.89455 6.06949 6.12571 6.14136 6.51947 6.64409 6.82253 7.56661 7.62882 7.69267 7.94802 8.16213 8.33671 8.97707 9.55185 11.07039 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.033260 B = 0.002595 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.642910 B =10787.932526 C =10934.639111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.107 3.893 3 O -0.160 6.160 4 C -0.014 4.014 5 C 0.144 3.856 6 O -0.362 6.362 7 C 0.460 3.540 8 O -0.502 6.502 9 C -0.102 4.102 10 C 0.033 3.967 11 C -0.530 4.530 12 H 0.059 0.941 13 C 0.059 3.941 14 N -0.890 5.890 15 Si 0.896 3.104 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.133 4.133 20 C -0.245 4.245 21 C 0.563 3.437 22 O -0.521 6.521 23 O -0.507 6.507 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.110 0.890 27 H 0.106 0.894 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.026 0.974 32 H 0.027 0.973 33 H 0.263 0.737 34 H 0.168 0.832 35 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.389 -15.839 8.227 24.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.054 3.946 3 O -0.056 6.056 4 C -0.062 4.062 5 C 0.070 3.930 6 O -0.281 6.281 7 C 0.304 3.696 8 O -0.388 6.388 9 C -0.140 4.140 10 C -0.004 4.004 11 C -0.568 4.568 12 H 0.077 0.923 13 C -0.143 4.143 14 N -0.528 5.528 15 Si 0.724 3.276 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.152 4.152 20 C -0.247 4.247 21 C 0.409 3.591 22 O -0.412 6.412 23 O -0.319 6.319 24 H 0.113 0.887 25 H 0.105 0.895 26 H 0.128 0.872 27 H 0.124 0.876 28 H 0.107 0.893 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.072 0.928 34 H 0.185 0.815 35 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -17.312 -14.940 8.605 24.432 hybrid contribution 0.311 -0.483 -0.725 0.925 sum -17.000 -15.423 7.880 24.269 Atomic orbital electron populations 1.20735 0.83203 1.05669 1.04842 1.22906 0.94149 0.82845 0.94741 1.83771 1.16725 1.34477 1.70617 1.21733 0.81913 0.94226 1.08304 1.21019 0.91318 0.97272 0.83395 1.86656 1.50679 1.61337 1.29418 1.24873 0.75794 0.74411 0.94535 1.90653 1.53874 1.50794 1.43487 1.21810 1.02108 1.02895 0.87174 1.19030 0.90623 0.93189 0.97571 1.21109 1.16355 1.27394 0.91967 0.92325 1.25016 0.96334 0.95912 0.97021 1.69977 1.22595 1.30751 1.29458 0.86594 0.78232 0.78328 0.84456 1.20156 1.21243 1.20141 1.22721 0.96868 0.92925 1.02693 1.20053 0.94012 0.90553 1.20086 1.19544 0.82878 0.85110 0.71546 1.90877 1.18229 1.84455 1.47662 1.84593 1.41883 1.19654 1.85755 0.88733 0.89505 0.87209 0.87599 0.89261 0.88738 0.88804 0.95531 0.95501 0.92750 0.81451 0.72683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.64 9.89 36.01 0.36 -0.28 16 2 C 0.11 1.12 7.38 -34.94 -0.26 0.86 16 3 O -0.16 -1.90 10.52 7.69 0.08 -1.82 16 4 C -0.01 -0.17 6.92 -35.75 -0.25 -0.42 16 5 C 0.14 1.84 5.98 36.00 0.22 2.05 16 6 O -0.36 -5.76 10.20 -39.27 -0.40 -6.16 16 7 C 0.46 8.67 7.96 36.01 0.29 8.96 16 8 O -0.50 -10.85 15.73 -18.75 -0.29 -11.14 16 9 C -0.10 -2.03 5.75 -27.89 -0.16 -2.19 16 10 C 0.03 0.85 4.26 -27.89 -0.12 0.73 16 11 C -0.53 -14.62 9.11 -34.44 -0.31 -14.94 16 12 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 15 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 C -0.13 -1.46 10.93 -37.44 -0.41 -1.87 16 20 C -0.24 -2.69 6.32 -103.30 -0.65 -3.34 16 21 C 0.56 5.79 8.33 34.38 0.29 6.08 16 22 O -0.52 -6.06 15.63 -19.30 -0.30 -6.36 16 23 O -0.51 -3.94 13.34 -40.70 -0.54 -4.48 16 24 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.11 0.84 6.49 -51.93 -0.34 0.51 16 27 H 0.11 1.20 8.13 -51.93 -0.42 0.77 16 28 H 0.09 1.10 8.13 -51.93 -0.42 0.68 16 29 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 30 H 0.09 1.72 8.14 -51.93 -0.42 1.29 16 31 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 32 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.17 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.41 1.19 9.11 45.56 0.42 1.61 16 LS Contribution 322.60 15.07 4.86 4.86 Total: -1.00 -34.39 322.60 -5.26 -39.65 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: -3.26 Total: -2.01 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -1.11 Total: -2.77 kcal Atomic # 7 Polarization: -26.73 SS G_CDS: 0.74 Total: -25.99 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -1.46 Total: -29.96 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.39 -5.26 -39.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600853329.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.609 kcal (2) G-P(sol) polarization free energy of solvation -34.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds