Wall clock time and date at job start Tue Mar 31 2020 05:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52991 * 109.47594 * 2 1 4 4 C 1.50707 * 109.46920 * 240.00054 * 2 1 3 5 5 H 1.08003 * 119.99883 * 240.00315 * 4 2 1 6 6 C 1.37874 * 120.00014 * 60.00320 * 4 2 1 7 7 N 1.31511 * 120.00015 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99790 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47089 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46621 * 120.00159 * 8 6 4 11 11 H 1.48500 * 109.47251 * 239.99905 * 8 6 4 12 12 C 1.53000 * 109.47187 * 120.00462 * 2 1 3 13 13 O 1.45202 * 109.46625 * 300.00037 * 12 2 1 14 14 C 1.34879 * 116.99964 * 180.02562 * 13 12 2 15 15 O 1.21613 * 119.99831 * 359.97438 * 14 13 12 16 16 C 1.46596 * 120.00313 * 180.26976 * 14 13 12 17 17 C 1.36130 * 125.65560 * 179.72216 * 16 14 13 18 18 C 1.41732 * 106.61773 * 180.02562 * 17 16 14 19 19 C 1.47354 * 126.77932 * 180.02562 * 18 17 16 20 20 O 1.21520 * 120.00088 * 359.97438 * 19 18 17 21 21 O 1.34748 * 119.99749 * 180.02562 * 19 18 17 22 22 C 1.37928 * 106.43943 * 0.02562 * 18 17 16 23 23 O 1.33455 * 108.34240 * 359.73603 * 22 18 17 24 24 H 1.08996 * 109.47324 * 300.00317 * 1 2 3 25 25 H 1.09001 * 109.46788 * 59.99601 * 1 2 3 26 26 H 1.08996 * 109.47538 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47434 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47379 * 300.00037 * 3 2 1 29 29 H 1.09005 * 109.47354 * 60.00045 * 3 2 1 30 30 H 0.97002 * 119.99980 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47391 * 179.97438 * 12 2 1 32 32 H 1.09004 * 109.46942 * 59.99192 * 12 2 1 33 33 H 1.08005 * 126.69272 * 359.97438 * 17 16 14 34 34 H 0.96703 * 117.00216 * 179.97438 * 21 19 18 35 35 H 1.08000 * 125.82429 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9436 0.8303 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 3.1472 -2.2864 -3.6038 10 1 1.1676 -1.5865 -4.8165 11 1 3.1473 -0.1858 -4.8161 12 6 2.0400 -0.7213 1.2492 13 8 1.5559 -0.0369 2.4347 14 6 1.9187 -0.5491 3.6286 15 8 2.6203 -1.5413 3.6766 16 6 1.4620 0.0863 4.8682 17 6 1.7530 -0.3347 6.1296 18 6 1.1102 0.5654 7.0158 19 6 1.1335 0.5214 8.4885 20 8 1.7511 -0.3551 9.0605 21 8 0.4691 1.4524 9.2009 22 6 0.4585 1.4908 6.2274 23 8 0.6873 1.1878 4.9480 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4423 -0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 0.7090 1.1615 -3.4844 31 1 3.1300 -0.7218 1.2490 32 1 1.6765 -1.7490 1.2491 33 1 2.3555 -1.1888 6.4020 34 1 0.5133 1.3821 10.1644 35 1 -0.1324 2.3211 6.5847 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603576035.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:41 Heat of formation + Delta-G solvation = -165.276508 kcal Electronic energy + Delta-G solvation = -21533.960856 eV Core-core repulsion = 17885.167779 eV Total energy + Delta-G solvation = -3648.793077 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.103 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.17537 -40.23553 -39.85182 -36.76164 -36.43020 -34.96817 -33.61267 -31.39284 -30.67157 -26.20712 -25.64979 -25.28351 -24.96029 -23.63201 -21.37218 -20.74295 -18.94709 -18.75325 -18.11539 -16.96330 -16.90138 -16.15483 -15.95257 -15.89678 -15.66054 -15.47175 -14.74142 -13.88332 -13.53470 -13.20703 -13.09854 -13.01171 -12.92319 -11.99897 -11.94949 -11.56449 -11.27420 -11.11475 -11.02295 -10.73763 -10.62310 -10.52834 -10.46243 -10.19054 -9.99188 -9.48496 -9.39101 -9.18563 -8.78988 -8.40923 -6.05083 -4.16962 0.57314 1.00526 2.18123 2.49241 2.59448 2.92953 3.17603 3.25300 3.33955 3.38694 4.13679 4.32002 4.39140 4.92163 5.06029 5.21647 5.24267 5.42627 5.71526 5.94462 6.01995 6.05602 6.33913 6.40590 6.62211 6.86757 6.94609 7.10335 7.11668 7.35432 7.50893 7.58634 7.67280 7.92289 8.01844 8.14776 8.34830 8.83121 9.48916 10.96217 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.048244 B = 0.003174 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.244934 B = 8819.501944 C = 9208.664952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.070 3.930 3 C -0.131 4.131 4 C -0.513 4.513 5 H 0.058 0.942 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.083 3.917 13 O -0.334 6.334 14 C 0.541 3.459 15 O -0.490 6.490 16 C -0.046 4.046 17 C -0.065 4.065 18 C -0.242 4.242 19 C 0.560 3.440 20 O -0.509 6.509 21 O -0.514 6.514 22 C 0.087 3.913 23 O -0.129 6.129 24 H 0.017 0.983 25 H 0.085 0.915 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.085 0.915 29 H 0.017 0.983 30 H 0.261 0.739 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.177 0.823 34 H 0.418 0.582 35 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.791 3.880 18.689 19.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.070 3.930 3 C -0.188 4.188 4 C -0.551 4.551 5 H 0.077 0.923 6 C -0.133 4.133 7 N -0.520 5.520 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.010 3.990 13 O -0.249 6.249 14 C 0.384 3.616 15 O -0.381 6.381 16 C -0.095 4.095 17 C -0.084 4.084 18 C -0.245 4.245 19 C 0.404 3.596 20 O -0.398 6.398 21 O -0.327 6.327 22 C 0.012 3.988 23 O -0.021 6.021 24 H 0.036 0.964 25 H 0.103 0.897 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.104 0.896 29 H 0.036 0.964 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.194 0.806 34 H 0.277 0.723 35 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -2.605 3.627 17.919 18.467 hybrid contribution 0.463 -0.656 -0.013 0.803 sum -2.142 2.970 17.906 18.277 Atomic orbital electron populations 1.21782 0.97219 0.99051 1.00792 1.18272 0.93531 0.93143 0.88067 1.21785 0.98147 0.98122 1.00793 1.20965 1.32046 1.12357 0.89701 0.92339 1.24856 0.94762 0.94898 0.98822 1.69837 1.36310 1.22553 1.23264 0.86472 0.78663 0.79692 0.82801 1.19737 1.20948 1.20943 1.23870 0.98566 0.96021 0.80504 1.86698 1.68530 1.55362 1.14298 1.19175 0.77744 0.81425 0.83224 1.90938 1.35455 1.24196 1.87474 1.20948 1.03186 0.91428 0.93964 1.21791 0.98267 0.99588 0.88764 1.19567 1.11068 1.02795 0.91048 1.19560 0.75105 0.78199 0.86754 1.90935 1.41232 1.35800 1.71839 1.84521 1.69207 1.52718 1.26210 1.25480 0.95620 0.97976 0.79693 1.84142 1.52665 1.37525 1.27726 0.96390 0.89651 0.95737 0.95740 0.89644 0.96392 0.92910 0.91980 0.91986 0.80601 0.72279 0.75213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.11 37.16 0.30 -2.81 16 2 C 0.07 1.69 0.58 -155.66 -0.09 1.60 16 3 C -0.13 -3.11 8.11 37.15 0.30 -2.81 16 4 C -0.51 -13.48 8.01 -34.44 -0.28 -13.76 16 5 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.80 5.15 -17.82 -0.09 1.71 16 7 N -0.88 -23.66 9.35 55.43 0.52 -23.14 16 8 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 9 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 C 0.08 1.79 4.27 37.16 0.16 1.95 16 13 O -0.33 -6.63 8.89 -42.59 -0.38 -7.00 16 14 C 0.54 9.62 7.93 34.10 0.27 9.89 16 15 O -0.49 -9.54 16.64 -19.35 -0.32 -9.86 16 16 C -0.05 -0.66 7.14 -36.97 -0.26 -0.92 16 17 C -0.06 -0.81 10.41 -39.01 -0.41 -1.22 16 18 C -0.24 -2.52 6.16 -104.97 -0.65 -3.16 16 19 C 0.56 5.51 8.33 34.44 0.29 5.80 16 20 O -0.51 -6.67 17.72 -19.28 -0.34 -7.01 16 21 O -0.51 -3.07 13.27 -40.62 -0.54 -3.61 16 22 C 0.09 0.74 11.98 30.62 0.37 1.10 16 23 O -0.13 -1.60 10.61 5.81 0.06 -1.54 16 24 H 0.02 0.38 7.68 -51.93 -0.40 -0.02 16 25 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 26 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 29 H 0.02 0.38 7.68 -51.93 -0.40 -0.02 16 30 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.18 2.14 8.06 -52.48 -0.42 1.72 16 34 H 0.42 0.68 9.11 45.56 0.42 1.09 16 35 H 0.23 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 314.86 15.07 4.74 4.74 Total: -1.00 -31.50 314.86 -4.46 -35.95 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: -3.09 Total: -1.48 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -0.09 Total: -2.62 kcal Atomic # 7 Polarization: -23.66 SS G_CDS: 0.52 Total: -23.14 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -1.52 Total: -29.02 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.50 -4.46 -35.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603576035.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.323 kcal (2) G-P(sol) polarization free energy of solvation -31.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds