Wall clock time and date at job start Tue Mar 31 2020 05:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.33911 * 125.61315 * 2 1 4 4 C 1.34937 * 109.38289 * 180.15242 * 3 2 1 5 5 C 1.46463 * 125.99628 * 179.88557 * 4 3 2 6 6 O 1.21619 * 120.00056 * 179.97438 * 5 4 3 7 7 O 1.34904 * 119.99969 * 359.68565 * 5 4 3 8 8 C 1.36638 * 108.00649 * 359.61380 * 4 3 2 9 9 C 1.35168 * 125.60598 * 179.72686 * 2 1 3 10 10 C 1.50704 * 126.44005 * 0.02562 * 9 2 1 11 11 O 1.45205 * 109.47220 * 179.97438 * 10 9 2 12 12 C 1.34231 * 116.99564 * 179.97438 * 11 10 9 13 13 O 1.20823 * 120.00204 * 359.97438 * 12 11 10 14 14 C 1.50699 * 119.99352 * 179.97438 * 12 11 10 15 15 C 1.53001 * 109.46598 * 180.02562 * 14 12 11 16 16 C 1.50707 * 109.46856 * 179.97438 * 15 14 12 17 17 H 1.07996 * 120.00013 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99703 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00232 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99745 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47067 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46925 * 120.00302 * 20 18 16 23 23 H 1.48503 * 109.47265 * 240.00183 * 20 18 16 24 24 H 1.09005 * 109.47204 * 270.27128 * 1 2 3 25 25 H 1.09004 * 109.46929 * 30.27138 * 1 2 3 26 26 H 1.08999 * 109.47475 * 150.27201 * 1 2 3 27 27 H 0.96706 * 116.99834 * 179.97438 * 7 5 4 28 28 H 1.08001 * 126.65086 * 180.23002 * 8 4 3 29 29 H 1.08998 * 109.46779 * 299.99563 * 10 9 2 30 30 H 1.08994 * 109.47055 * 59.99346 * 10 9 2 31 31 H 1.09002 * 109.47535 * 299.99949 * 14 12 11 32 32 H 1.08999 * 109.47027 * 60.00496 * 14 12 11 33 33 H 1.08997 * 109.47253 * 299.99417 * 15 14 12 34 34 H 1.08990 * 109.47387 * 60.00094 * 15 14 12 35 35 H 0.96999 * 119.99728 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2868 1.0887 0.0000 4 6 3.5823 0.7115 -0.0034 5 6 4.7400 1.6087 -0.0069 6 8 5.8659 1.1486 -0.0093 7 8 4.5576 2.9453 -0.0133 8 6 3.6247 -0.6542 0.0032 9 6 2.2939 -1.0990 0.0052 10 6 1.8294 -2.5326 0.0115 11 8 2.9825 -3.4151 0.0153 12 6 2.7395 -4.7352 0.0216 13 8 1.6011 -5.1399 0.0244 14 6 3.8867 -5.7124 0.0253 15 6 3.3395 -7.1411 0.0317 16 6 4.4867 -8.1184 0.0347 17 1 5.5042 -7.7566 0.0327 18 6 4.2371 -9.4744 0.0411 19 7 2.9980 -9.9150 0.0440 20 14 5.6591 -10.6858 0.0441 21 1 6.9438 -9.9410 0.0394 22 1 5.5838 -11.5344 1.2605 23 1 5.5800 -11.5450 -1.1645 24 1 -0.3634 0.0049 1.0277 25 1 -0.3633 0.8876 -0.5181 26 1 -0.3634 -0.8924 -0.5096 27 1 5.3519 3.4968 -0.0150 28 1 4.5108 -1.2717 0.0061 29 1 1.2283 -2.7158 0.9022 30 1 1.2288 -2.7238 -0.8777 31 1 4.4959 -5.5610 -0.8659 32 1 4.4971 -5.5527 0.9141 33 1 2.7302 -7.2929 0.9227 34 1 2.7293 -7.3005 -0.8572 35 1 2.8225 -10.8689 0.0481 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608037728.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:43 Heat of formation + Delta-G solvation = -175.366494 kcal Electronic energy + Delta-G solvation = -20858.182983 eV Core-core repulsion = 17208.952371 eV Total energy + Delta-G solvation = -3649.230612 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.103 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.17078 -40.25442 -39.98943 -36.58417 -36.41144 -34.14659 -33.60207 -32.50026 -31.18305 -28.77558 -27.18302 -25.71873 -23.65703 -22.32277 -21.40978 -20.52406 -19.70587 -18.46099 -17.87539 -17.35269 -17.11966 -16.27680 -16.26672 -15.67341 -15.59895 -15.29929 -14.47144 -14.08856 -13.95942 -13.61346 -13.38875 -13.35672 -13.19194 -12.45212 -12.40413 -12.24053 -12.02672 -12.01822 -11.31747 -11.21480 -10.99327 -10.80953 -10.63353 -10.09088 -9.98549 -9.98482 -9.59859 -9.17937 -8.86034 -8.39386 -6.03074 -4.07801 0.47714 1.78724 2.01308 2.55504 2.75959 2.82547 2.93649 3.30397 3.37944 3.41843 4.23221 4.38204 4.45162 4.69605 4.82313 5.00400 5.12747 5.15966 5.23902 5.27748 5.30699 5.32692 5.62996 5.69528 5.94808 5.96757 6.09832 6.17490 6.48369 6.59995 6.87468 7.43503 7.65008 7.71044 7.96260 8.20843 8.36786 8.99519 9.56536 11.07988 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.025614 B = 0.002922 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.900962 B = 9578.635125 C =10640.484043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.047 3.953 3 O -0.147 6.147 4 C -0.083 4.083 5 C 0.574 3.426 6 O -0.491 6.491 7 O -0.507 6.507 8 C -0.065 4.065 9 C -0.195 4.195 10 C 0.138 3.862 11 O -0.362 6.362 12 C 0.459 3.541 13 O -0.504 6.504 14 C -0.103 4.103 15 C 0.033 3.967 16 C -0.528 4.528 17 H 0.060 0.940 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.895 3.105 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.093 0.907 25 H 0.085 0.915 26 H 0.098 0.902 27 H 0.419 0.581 28 H 0.173 0.827 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.708 25.177 -0.094 25.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.006 4.006 3 O -0.043 6.043 4 C -0.132 4.132 5 C 0.418 3.582 6 O -0.381 6.381 7 O -0.319 6.319 8 C -0.085 4.085 9 C -0.197 4.197 10 C 0.063 3.937 11 O -0.280 6.280 12 C 0.303 3.697 13 O -0.391 6.391 14 C -0.141 4.141 15 C -0.005 4.005 16 C -0.566 4.566 17 H 0.078 0.922 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.723 3.277 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.112 0.888 25 H 0.104 0.896 26 H 0.116 0.884 27 H 0.278 0.722 28 H 0.191 0.809 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.311 24.860 -0.094 25.079 hybrid contribution 1.167 -0.429 0.007 1.243 sum -2.144 24.431 -0.087 24.525 Atomic orbital electron populations 1.20557 0.83767 1.05103 1.04609 1.22548 0.94292 0.83113 1.00644 1.84097 1.15501 1.33873 1.70810 1.20476 0.81305 0.92487 1.18982 1.18773 0.86091 0.80613 0.72703 1.91037 1.23103 1.77289 1.46621 1.84660 1.43437 1.18080 1.85728 1.21887 0.98894 0.91681 0.96001 1.19950 0.93217 0.95190 1.11310 1.20917 0.86912 0.82855 1.02966 1.86540 1.37543 1.18927 1.84987 1.24815 0.92543 0.80826 0.71503 1.90639 1.24500 1.78911 1.45019 1.21789 0.93722 0.94397 1.04159 1.19030 0.96573 0.85936 0.98916 1.21195 0.92748 0.91001 1.51666 0.92216 1.25022 0.95673 0.98552 0.95103 1.70000 1.18553 1.14217 1.50045 0.86487 0.82469 0.81123 0.77617 1.19614 1.20968 1.20961 0.88841 0.89580 0.88391 0.72210 0.80931 0.89889 0.89932 0.88818 0.88819 0.95555 0.95555 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.21 36.00 0.37 -0.11 16 2 C 0.05 0.46 7.31 -35.40 -0.26 0.20 16 3 O -0.15 -1.61 10.67 4.74 0.05 -1.56 16 4 C -0.08 -0.97 7.18 -36.85 -0.26 -1.24 16 5 C 0.57 6.26 8.30 34.04 0.28 6.54 16 6 O -0.49 -6.51 17.65 -19.36 -0.34 -6.85 16 7 O -0.51 -3.93 13.44 -42.50 -0.57 -4.50 16 8 C -0.07 -0.80 9.98 -39.38 -0.39 -1.19 16 9 C -0.20 -2.26 6.10 -104.93 -0.64 -2.90 16 10 C 0.14 1.75 5.50 36.01 0.20 1.95 16 11 O -0.36 -5.74 9.63 -39.26 -0.38 -6.12 16 12 C 0.46 8.74 7.96 36.01 0.29 9.03 16 13 O -0.50 -11.00 15.73 -18.75 -0.29 -11.29 16 14 C -0.10 -2.07 5.75 -27.88 -0.16 -2.23 16 15 C 0.03 0.85 4.26 -27.88 -0.12 0.73 16 16 C -0.53 -14.67 9.11 -34.44 -0.31 -14.98 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -26.85 13.29 55.43 0.74 -26.12 16 20 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 24 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.10 0.48 7.86 -51.93 -0.41 0.07 16 27 H 0.42 1.06 9.11 45.56 0.42 1.48 16 28 H 0.17 2.13 7.97 -52.49 -0.42 1.71 16 29 H 0.08 0.99 8.13 -51.93 -0.42 0.57 16 30 H 0.08 0.98 8.13 -51.93 -0.42 0.56 16 31 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 32 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 33 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 34 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 324.43 15.07 4.89 4.89 Total: -1.00 -35.16 324.43 -5.37 -40.53 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: -3.33 Total: -2.72 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -1.11 Total: -2.63 kcal Atomic # 7 Polarization: -26.85 SS G_CDS: 0.74 Total: -26.12 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -1.54 Total: -30.32 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.16 -5.37 -40.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608037728.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.834 kcal (2) G-P(sol) polarization free energy of solvation -35.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds