Wall clock time and date at job start Tue Mar 31 2020 06:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.38356 * 127.15086 * 2 1 4 4 C 1.39784 * 126.56278 * 359.97438 * 3 2 1 5 5 H 1.07990 * 119.99937 * 5.89831 * 4 3 2 6 6 C 1.40079 * 119.99787 * 185.89991 * 4 3 2 7 7 N 1.30818 * 120.00007 * 6.44701 * 6 4 3 8 8 Si 1.86802 * 120.00049 * 186.44417 * 6 4 3 9 9 H 1.48499 * 109.47321 * 265.01629 * 8 6 4 10 10 H 1.48499 * 109.46774 * 25.01756 * 8 6 4 11 11 H 1.48500 * 109.47127 * 145.01048 * 8 6 4 12 12 N 1.33102 * 106.87243 * 179.73573 * 3 2 1 13 13 N 1.28511 * 109.74196 * 0.23618 * 12 3 2 14 14 C 1.32388 * 110.20972 * 0.02562 * 13 12 3 15 15 S 1.76199 * 126.26079 * 180.02562 * 14 13 12 16 16 C 1.80999 * 99.99815 * 359.97438 * 15 14 13 17 17 C 1.50702 * 109.46668 * 179.97438 * 16 15 14 18 18 O 1.21276 * 120.00501 * 0.02562 * 17 16 15 19 19 N 1.34783 * 119.99852 * 179.97438 * 17 16 15 20 20 C 1.47069 * 136.05391 * 359.62509 * 19 17 16 21 21 C 1.53239 * 88.08176 * 207.20620 * 20 19 17 22 22 C 1.47062 * 136.05940 * 180.02562 * 19 17 16 23 23 H 1.09010 * 109.46877 * 90.00510 * 1 2 3 24 24 H 1.09003 * 109.47456 * 209.99870 * 1 2 3 25 25 H 1.08999 * 109.47490 * 330.00543 * 1 2 3 26 26 H 0.97004 * 120.00095 * 179.97438 * 7 6 4 27 27 H 1.09006 * 109.46870 * 299.99427 * 16 15 14 28 28 H 1.08993 * 109.47400 * 59.99540 * 16 15 14 29 29 H 1.08998 * 113.46881 * 321.93951 * 20 19 17 30 30 H 1.09005 * 113.46138 * 92.37926 * 20 19 17 31 31 H 1.09002 * 114.32815 * 220.47690 * 21 20 19 32 32 H 1.09001 * 114.01675 * 87.71542 * 21 20 19 33 33 H 1.09003 * 113.46763 * 267.62490 * 22 19 17 34 34 H 1.09001 * 113.46714 * 38.05883 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.3005 1.1028 0.0000 4 6 1.9085 2.4445 -0.0005 5 1 0.8641 2.7019 0.0952 6 6 2.8704 3.4551 -0.1251 7 7 4.1179 3.1445 -0.3672 8 14 2.3718 5.2464 0.0543 9 1 2.1059 5.8231 -1.2881 10 1 1.1439 5.3376 0.8844 11 1 3.4693 6.0025 0.7093 12 7 3.5490 0.6415 0.0059 13 7 3.5370 -0.6436 0.0044 14 6 2.2904 -1.0893 -0.0030 15 16 1.7874 -2.7780 -0.0070 16 6 3.4060 -3.5880 0.0009 17 6 3.2192 -5.0834 -0.0006 18 8 2.1020 -5.5550 -0.0069 19 7 4.2940 -5.8967 0.0040 20 6 5.7543 -5.7219 0.0042 21 6 5.8657 -7.0837 -0.6894 22 6 4.5226 -7.3495 0.0040 23 1 -0.3633 -0.0001 -1.0278 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5137 26 1 4.7840 3.8444 -0.4539 27 1 3.9655 -3.2904 -0.8860 28 1 3.9562 -3.2918 0.8940 29 1 6.0921 -4.8916 -0.6159 30 1 6.1894 -5.7067 1.0035 31 1 6.6855 -7.7053 -0.3292 32 1 5.8050 -7.0342 -1.7766 33 1 4.6261 -7.7726 1.0032 34 1 3.8154 -7.9001 -0.6163 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001613756640.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:38 Heat of formation + Delta-G solvation = 77.444222 kcal Electronic energy + Delta-G solvation = -19055.693606 eV Core-core repulsion = 15924.764063 eV Total energy + Delta-G solvation = -3130.929543 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.51429 -40.35429 -37.83372 -33.70498 -33.31932 -31.15973 -29.36219 -28.52946 -26.48427 -26.12585 -25.48659 -22.41797 -20.86439 -20.53954 -19.08712 -17.42501 -17.12163 -16.53478 -16.46942 -15.48785 -15.16725 -14.97025 -14.59396 -14.41700 -13.65210 -13.35620 -13.03053 -12.84354 -12.81085 -12.46280 -12.23035 -12.19833 -11.78259 -11.40981 -11.30075 -11.02624 -10.93320 -10.41556 -10.25984 -9.92949 -9.72730 -9.59916 -8.91434 -8.70624 -8.45304 -8.38286 -6.81682 -6.67595 -4.57323 1.77630 2.55703 2.75042 2.87095 2.90823 3.06259 3.10292 3.34939 3.86960 4.04308 4.23948 4.36360 4.39939 4.70137 4.86894 5.13939 5.22619 5.30886 5.32106 5.36796 5.43218 5.57524 5.61217 5.67579 5.86004 5.91601 6.07427 6.75363 6.88929 7.23195 7.48512 7.51887 7.87654 8.03580 8.17539 8.69449 8.85319 10.26055 10.61153 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.034806 B = 0.003660 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.266684 B = 7647.802595 C = 8394.257823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.513 5.513 3 C 0.348 3.652 4 C -0.449 4.449 5 H 0.085 0.915 6 C 0.080 3.920 7 N -0.739 5.739 8 Si 0.920 3.080 9 H -0.270 1.270 10 H -0.262 1.262 11 H -0.274 1.274 12 N -0.335 5.335 13 N -0.290 5.290 14 C 0.032 3.968 15 S 0.018 5.982 16 C -0.124 4.124 17 C 0.563 3.437 18 O -0.526 6.526 19 N -0.650 5.650 20 C 0.097 3.903 21 C -0.156 4.156 22 C 0.106 3.894 23 H 0.058 0.942 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.279 0.721 27 H 0.118 0.882 28 H 0.117 0.883 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.817 -13.772 0.277 13.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.215 5.215 3 C 0.104 3.896 4 C -0.489 4.489 5 H 0.103 0.897 6 C -0.145 4.145 7 N -0.363 5.363 8 Si 0.744 3.256 9 H -0.195 1.195 10 H -0.186 1.186 11 H -0.199 1.199 12 N -0.183 5.183 13 N -0.136 5.136 14 C -0.340 4.340 15 S 0.244 5.756 16 C -0.276 4.276 17 C 0.352 3.648 18 O -0.402 6.402 19 N -0.387 5.387 20 C -0.026 4.026 21 C -0.194 4.194 22 C -0.017 4.017 23 H 0.076 0.924 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.136 0.864 28 H 0.136 0.864 29 H 0.102 0.898 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.683 -14.316 0.246 14.416 hybrid contribution -0.327 1.610 0.137 1.648 sum 1.356 -12.706 0.383 12.784 Atomic orbital electron populations 1.21516 0.78405 1.02727 1.01792 1.46028 1.06155 1.05220 1.64118 1.21622 0.84713 0.88424 0.94849 1.18104 0.95315 0.86469 1.49012 0.89736 1.25785 0.94304 1.01309 0.93130 1.69992 1.01688 1.35070 1.29527 0.86112 0.79392 0.80871 0.79210 1.19475 1.18559 1.19908 1.75383 1.15432 0.97957 1.29522 1.74490 1.15209 1.07678 1.16207 1.25661 0.91713 0.93533 1.23063 1.85045 1.05556 0.89446 1.95575 1.23293 1.02380 0.93136 1.08795 1.19494 0.82890 0.87141 0.75268 1.90726 1.22975 1.76800 1.49720 1.49551 1.06492 1.08343 1.74344 1.23020 0.79497 0.98841 1.01238 1.23349 0.97644 0.97153 1.01236 1.22934 0.95721 0.82325 1.00746 0.92389 0.91462 0.90318 0.90971 0.86397 0.86448 0.89762 0.89348 0.89039 0.88657 0.89761 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.90 10.89 59.84 0.65 2.55 16 2 N -0.51 -12.68 3.26 -123.17 -0.40 -13.09 16 3 C 0.35 9.83 7.50 -154.80 -1.16 8.67 16 4 C -0.45 -11.96 9.05 -38.31 -0.35 -12.31 16 5 H 0.08 2.04 7.27 -52.49 -0.38 1.66 16 6 C 0.08 2.05 5.49 -17.29 -0.09 1.96 16 7 N -0.74 -20.25 12.00 55.56 0.67 -19.59 16 8 Si 0.92 18.53 29.57 -169.99 -5.03 13.50 16 9 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 10 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 11 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 12 N -0.34 -10.10 10.56 31.26 0.33 -9.77 16 13 N -0.29 -7.93 11.62 30.89 0.36 -7.57 16 14 C 0.03 0.79 8.09 -87.28 -0.71 0.08 16 15 S 0.02 0.36 20.92 -107.50 -2.25 -1.89 16 16 C -0.12 -2.11 5.54 36.01 0.20 -1.91 16 17 C 0.56 9.00 8.10 -10.98 -0.09 8.92 16 18 O -0.53 -10.06 16.64 5.56 0.09 -9.97 16 19 N -0.65 -7.85 3.69 -185.44 -0.68 -8.54 16 20 C 0.10 0.80 8.40 -8.64 -0.07 0.73 16 21 C -0.16 -0.95 8.48 -26.36 -0.22 -1.18 16 22 C 0.11 0.91 8.61 -8.52 -0.07 0.83 16 23 H 0.06 1.01 8.14 -51.92 -0.42 0.58 16 24 H 0.07 1.14 7.85 -51.93 -0.41 0.73 16 25 H 0.08 1.38 7.48 -51.93 -0.39 0.99 16 26 H 0.28 6.88 8.30 -40.82 -0.34 6.55 16 27 H 0.12 1.97 8.14 -51.91 -0.42 1.55 16 28 H 0.12 1.96 8.14 -51.92 -0.42 1.54 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 313.88 15.07 4.73 4.73 Total: -1.00 -35.67 313.88 -8.22 -43.88 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -4.12 Total: -0.05 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: -1.92 Total: 8.34 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: 0.27 Total: -58.55 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.09 Total: -9.97 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Atomic # 16 Polarization: 0.36 SS G_CDS: -2.25 Total: -1.89 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -35.67 -8.22 -43.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001613756640.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.328 kcal (2) G-P(sol) polarization free energy of solvation -35.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds