Wall clock time and date at job start Tue Mar 31 2020 05:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38272 * 119.94390 * 2 1 4 4 C 1.38100 * 120.09527 * 180.20817 * 3 2 1 5 5 C 1.38916 * 119.97793 * 359.51928 * 4 3 2 6 6 N 1.39888 * 120.05817 * 180.22963 * 5 4 3 7 7 C 1.34780 * 120.00042 * 134.78496 * 6 5 4 8 8 S 1.71203 * 119.99809 * 4.13286 * 7 6 5 9 9 N 1.34773 * 119.99817 * 184.12859 * 7 6 5 10 10 C 1.46501 * 120.00133 * 0.02562 * 9 7 6 11 11 C 1.46503 * 119.99903 * 180.02562 * 9 7 6 12 12 C 1.50692 * 109.47290 * 89.99898 * 11 9 7 13 13 H 1.08000 * 120.00346 * 0.02562 * 12 11 9 14 14 C 1.37881 * 120.00028 * 180.02562 * 12 11 9 15 15 N 1.31512 * 120.00022 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00044 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47139 * 59.99753 * 16 14 12 18 18 H 1.48501 * 109.47365 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47272 * 299.99986 * 16 14 12 20 20 C 1.38817 * 119.88663 * 0.24941 * 5 4 3 21 21 C 1.38361 * 119.90406 * 0.02562 * 20 5 4 22 22 F 1.35093 * 119.99434 * 180.02562 * 21 20 5 23 23 H 1.09002 * 109.47471 * 270.25689 * 1 2 3 24 24 H 1.09005 * 109.46990 * 30.24962 * 1 2 3 25 25 H 1.08991 * 109.47652 * 150.25026 * 1 2 3 26 26 H 1.08003 * 119.95171 * 0.02562 * 3 2 1 27 27 H 1.07995 * 120.00968 * 179.78630 * 4 3 2 28 28 H 0.96993 * 119.99711 * 314.78794 * 6 5 4 29 29 H 1.08999 * 109.46627 * 89.99728 * 10 9 7 30 30 H 1.09000 * 109.46815 * 209.99797 * 10 9 7 31 31 H 1.08996 * 109.46813 * 329.99891 * 10 9 7 32 32 H 1.08998 * 109.47054 * 210.00108 * 11 9 7 33 33 H 1.09001 * 109.46768 * 329.99921 * 11 9 7 34 34 H 0.97002 * 119.99831 * 179.97438 * 15 14 12 35 35 H 1.07995 * 120.05442 * 179.97438 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5782 1.2018 -0.0043 5 6 4.2755 0.0004 0.0014 6 7 5.6744 0.0021 0.0018 7 6 6.3490 -0.8155 0.8343 8 16 5.4974 -1.9310 1.8147 9 7 7.6940 -0.7549 0.8947 10 6 8.4227 0.2000 0.0560 11 6 8.4274 -1.6440 1.7991 12 6 8.7691 -2.9227 1.0787 13 1 8.4702 -3.0594 0.0499 14 6 9.4632 -3.9183 1.7330 15 7 9.8267 -3.7522 2.9859 16 14 9.8873 -5.5032 0.8398 17 1 10.7315 -5.1945 -0.3423 18 1 10.6306 -6.4044 1.7565 19 1 8.6375 -6.1702 0.3947 20 6 3.5818 -1.2020 0.0062 21 6 2.1982 -1.2001 0.0048 22 9 1.5212 -2.3692 0.0100 23 1 -0.3634 0.0046 1.0277 24 1 -0.3633 0.8878 -0.5177 25 1 -0.3634 -0.8921 -0.5099 26 1 1.6555 2.1325 0.0004 27 1 4.1158 2.1384 -0.0078 28 1 6.1587 0.5918 -0.5969 29 1 8.5381 1.1413 0.5934 30 1 9.4061 -0.2041 -0.1844 31 1 7.8660 0.3733 -0.8649 32 1 9.3451 -1.1543 2.1249 33 1 7.8083 -1.8703 2.6672 34 1 10.3147 -4.4527 3.4463 35 1 4.1211 -2.1376 0.0103 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007350884.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:41 Heat of formation + Delta-G solvation = 8.409356 kcal Electronic energy + Delta-G solvation = -19408.174504 eV Core-core repulsion = 16254.331423 eV Total energy + Delta-G solvation = -3153.843081 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.090 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.62438 -39.97377 -38.22909 -35.45839 -32.77458 -31.55395 -30.52999 -28.36948 -27.55317 -25.87761 -23.65187 -22.82720 -21.42431 -21.02626 -18.46658 -17.69565 -16.71266 -16.25584 -16.01517 -15.53623 -15.41912 -14.88186 -14.59357 -14.37384 -13.70871 -13.64050 -13.39680 -13.21706 -12.82399 -12.46080 -12.25964 -12.13615 -11.65684 -11.52071 -11.44189 -11.18674 -10.97887 -10.72253 -10.40319 -10.20021 -9.93116 -9.03138 -8.70118 -8.49157 -8.01044 -7.01505 -6.29174 -6.10730 -4.15491 1.06861 1.37971 2.05296 2.52483 3.14123 3.29832 3.35549 3.39792 3.63684 3.71660 4.40751 4.46175 4.75472 4.87576 5.01786 5.08505 5.25189 5.29167 5.39237 5.41029 5.52838 5.71017 5.76516 5.86026 6.02608 6.11901 6.23499 6.41295 6.52243 6.61286 7.04825 7.05400 7.36771 7.42906 7.81131 7.83415 8.06263 8.82455 9.47881 10.97777 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.024616 B = 0.004623 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.203217 B = 6054.807247 C = 6750.495365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.125 4.125 3 C -0.095 4.095 4 C -0.137 4.137 5 C 0.165 3.835 6 N -0.653 5.653 7 C 0.548 3.452 8 S -0.624 6.624 9 N -0.535 5.535 10 C 0.060 3.940 11 C 0.235 3.765 12 C -0.524 4.524 13 H 0.056 0.944 14 C 0.069 3.931 15 N -0.889 5.889 16 Si 0.900 3.100 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.274 1.274 20 C -0.099 4.099 21 C 0.099 3.901 22 F -0.137 7.137 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.132 0.868 27 H 0.126 0.874 28 H 0.402 0.598 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.041 0.959 33 H 0.080 0.920 34 H 0.266 0.734 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.102 13.360 -9.067 19.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.126 4.126 3 C -0.114 4.114 4 C -0.158 4.158 5 C 0.070 3.930 6 N -0.284 5.284 7 C 0.191 3.809 8 S -0.489 6.489 9 N -0.238 5.238 10 C -0.086 4.086 11 C 0.117 3.883 12 C -0.563 4.563 13 H 0.074 0.926 14 C -0.134 4.134 15 N -0.527 5.527 16 Si 0.728 3.272 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.124 4.124 21 C 0.078 3.922 22 F -0.116 7.116 23 H 0.090 0.910 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.149 0.851 27 H 0.144 0.856 28 H 0.241 0.759 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -11.307 12.457 -8.171 18.702 hybrid contribution 1.068 -0.225 -1.178 1.605 sum -10.239 12.232 -9.349 18.490 Atomic orbital electron populations 1.20683 0.90504 1.02896 1.02634 1.19894 0.96772 0.92005 1.03964 1.20492 0.92954 0.96886 1.01093 1.20895 0.94406 0.96370 1.04153 1.16997 0.80967 0.93226 1.01834 1.42252 1.04902 1.41860 1.39432 1.22329 0.85745 0.87092 0.85773 1.93201 1.65013 1.40464 1.50237 1.47832 1.02280 1.34981 1.38683 1.22024 0.99332 0.93231 0.94031 1.20057 0.91248 0.87288 0.89712 1.21060 1.36274 1.00444 0.98508 0.92565 1.24825 0.95472 0.98301 0.94810 1.69905 1.38543 1.34322 1.09966 0.86520 0.78551 0.82968 0.79192 1.20420 1.21080 1.19918 1.21634 0.92301 1.00790 0.97630 1.17199 0.89371 0.80902 1.04755 1.91467 1.79897 1.46216 1.93983 0.90988 0.91304 0.91363 0.85057 0.85561 0.75852 0.91795 0.88647 0.92258 0.94165 0.90229 0.92470 0.81894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 9.83 36.01 0.35 -0.69 16 2 C -0.12 -1.53 5.89 -104.52 -0.62 -2.15 16 3 C -0.09 -1.01 9.69 -39.62 -0.38 -1.40 16 4 C -0.14 -1.59 9.97 -39.38 -0.39 -1.98 16 5 C 0.16 2.43 5.93 -83.72 -0.50 1.93 16 6 N -0.65 -9.69 5.19 -11.41 -0.06 -9.75 16 7 C 0.55 10.76 7.56 -86.92 -0.66 10.11 16 8 S -0.62 -15.22 24.22 -107.50 -2.60 -17.82 16 9 N -0.53 -10.37 2.86 -185.00 -0.53 -10.90 16 10 C 0.06 0.80 10.24 59.85 0.61 1.42 16 11 C 0.24 5.76 4.92 -5.20 -0.03 5.74 16 12 C -0.52 -14.16 9.39 -34.44 -0.32 -14.48 16 13 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 14 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 15 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 16 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 19 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 20 C -0.10 -1.67 7.85 -39.32 -0.31 -1.98 16 21 C 0.10 1.52 7.24 -39.44 -0.29 1.24 16 22 F -0.14 -2.22 16.47 2.25 0.04 -2.18 16 23 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 25 H 0.07 0.65 7.63 -51.93 -0.40 0.26 16 26 H 0.13 1.00 8.06 -52.48 -0.42 0.57 16 27 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 28 H 0.40 4.44 6.52 -40.82 -0.27 4.18 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.09 1.31 8.07 -51.93 -0.42 0.89 16 31 H 0.06 0.61 6.30 -51.93 -0.33 0.28 16 32 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 33 H 0.08 2.23 6.58 -51.93 -0.34 1.89 16 34 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.16 3.24 6.09 -44.09 -0.27 2.97 16 LS Contribution 312.72 15.07 4.71 4.71 Total: -1.00 -33.06 312.72 -9.44 -42.50 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -4.09 Total: 2.27 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -2.62 Total: -0.42 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 0.15 Total: -45.67 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -15.22 SS G_CDS: -2.60 Total: -17.82 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.06 -9.44 -42.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007350884.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.909 kcal (2) G-P(sol) polarization free energy of solvation -33.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds