Wall clock time and date at job start Tue Mar 31 2020 05:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30815 * 1 3 3 Si 1.86802 * 119.99673 * 2 1 4 4 H 1.48505 * 109.47343 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47081 * 299.99846 * 3 2 1 6 6 H 1.48497 * 109.47501 * 59.99836 * 3 2 1 7 7 C 1.39970 * 120.00351 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99658 * 197.98835 * 7 2 1 9 9 C 1.40986 * 120.00027 * 17.98764 * 7 2 1 10 10 C 1.40953 * 120.11579 * 204.69982 * 9 7 2 11 11 C 1.36210 * 119.88166 * 180.23309 * 10 9 7 12 12 C 1.39997 * 120.11899 * 359.49238 * 11 10 9 13 13 C 1.47875 * 119.88640 * 180.25682 * 12 11 10 14 14 C 1.39697 * 120.09440 * 180.25153 * 13 12 11 15 15 C 1.37793 * 119.96614 * 180.02562 * 14 13 12 16 16 C 1.38976 * 120.26205 * 359.94829 * 15 14 13 17 17 C 1.39264 * 120.04372 * 359.96408 * 16 15 14 18 18 C 1.38335 * 119.95873 * 359.86705 * 17 16 15 19 19 O 1.36138 * 120.75872 * 180.21534 * 17 16 15 20 20 C 1.43173 * 116.69953 * 342.73591 * 19 17 16 21 21 C 1.53468 * 108.22212 * 46.26496 * 20 19 17 22 22 O 1.36059 * 119.24905 * 179.82582 * 16 15 14 23 23 C 1.39997 * 120.22592 * 0.50981 * 12 11 10 24 24 C 1.36216 * 120.11814 * 359.74918 * 23 12 11 25 25 H 0.97002 * 120.00306 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.05457 * 359.95332 * 10 9 7 27 27 H 1.08001 * 119.93940 * 179.72384 * 11 10 9 28 28 H 1.07994 * 120.01972 * 0.02562 * 14 13 12 29 29 H 1.07998 * 119.87179 * 179.97438 * 15 14 13 30 30 H 1.08002 * 120.02286 * 180.18106 * 18 17 16 31 31 H 1.09002 * 109.71283 * 286.58831 * 20 19 17 32 32 H 1.09000 * 109.71356 * 165.95036 * 20 19 17 33 33 H 1.09007 * 109.70045 * 180.47993 * 21 20 19 34 34 H 1.08998 * 109.73948 * 59.89071 * 21 20 19 35 35 H 1.08001 * 119.94141 * 179.77414 * 23 12 11 36 36 H 1.07999 * 120.06145 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.7021 1.3466 -0.0006 5 1 1.8833 2.3965 -1.2125 6 1 1.8833 2.3966 1.2124 7 6 2.0081 -1.2121 0.0005 8 1 3.0485 -1.2347 0.2894 9 6 1.3549 -2.4035 -0.3760 10 6 1.8269 -3.6468 0.0911 11 6 1.1951 -4.7952 -0.2795 12 6 0.0724 -4.7414 -1.1142 13 6 -0.6130 -5.9909 -1.5087 14 6 -1.7305 -5.9427 -2.3456 15 6 -2.3674 -7.1086 -2.7111 16 6 -1.9020 -8.3348 -2.2513 17 6 -0.7874 -8.3896 -1.4182 18 6 -0.1416 -7.2227 -1.0506 19 8 -0.3165 -9.5830 -0.9628 20 6 -1.2061 -10.7014 -1.0509 21 6 -1.8377 -10.7033 -2.4495 22 8 -2.5488 -9.4729 -2.6222 23 6 -0.4005 -3.5091 -1.5808 24 6 0.2273 -2.3552 -1.2204 25 1 -0.4851 0.8400 0.0004 26 1 2.6907 -3.6891 0.7379 27 1 1.5586 -5.7487 0.0742 28 1 -2.0950 -4.9922 -2.7059 29 1 -3.2314 -7.0696 -3.3578 30 1 0.7246 -7.2642 -0.4070 31 1 -1.9864 -10.6108 -0.2952 32 1 -0.6502 -11.6263 -0.8972 33 1 -2.5276 -11.5424 -2.5400 34 1 -1.0572 -10.7861 -3.2058 35 1 -1.2648 -3.4733 -2.2274 36 1 -0.1380 -1.4051 -1.5813 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041308461.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:19 Heat of formation + Delta-G solvation = -34.715263 kcal Electronic energy + Delta-G solvation = -20579.389704 eV Core-core repulsion = 17379.400202 eV Total energy + Delta-G solvation = -3199.989502 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.92286 -38.27799 -37.02016 -36.71283 -33.91416 -31.48276 -30.70719 -29.84599 -29.06924 -27.82525 -25.37376 -24.15160 -22.71780 -21.37031 -20.47830 -19.75499 -18.37804 -17.57058 -17.00515 -16.74796 -15.60351 -15.27282 -14.96952 -14.70416 -14.24967 -13.96102 -13.91601 -13.39633 -13.24126 -12.89199 -12.83391 -12.32079 -12.16368 -11.77131 -11.48826 -11.35295 -11.18554 -11.01242 -10.89071 -10.70316 -10.40520 -10.21763 -9.80649 -9.42262 -9.29249 -8.39181 -7.99751 -7.64541 -7.03669 -6.86980 -4.45619 1.49495 1.75575 2.71379 2.98155 3.03457 3.06631 3.08923 3.27727 3.39835 3.79037 4.16519 4.29306 4.63610 4.77446 4.85918 4.92676 5.18960 5.39696 5.52158 5.63037 5.65431 5.78420 5.85733 6.11934 6.25159 6.32617 6.53366 6.62819 6.79509 6.85913 6.96314 7.07117 7.12821 7.17845 7.32285 7.50129 7.71229 7.83238 7.91670 8.05274 8.13237 8.47198 8.69769 8.82289 9.95933 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.047957 B = 0.003294 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.719031 B = 8497.731604 C = 8974.445508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.445 4.445 8 H 0.083 0.917 9 C 0.119 3.881 10 C -0.230 4.230 11 C -0.061 4.061 12 C -0.205 4.205 13 C 0.033 3.967 14 C -0.140 4.140 15 C -0.100 4.100 16 C 0.002 3.998 17 C 0.060 3.940 18 C -0.143 4.143 19 O -0.312 6.312 20 C 0.022 3.978 21 C 0.023 3.977 22 O -0.313 6.313 23 C -0.073 4.073 24 C -0.173 4.173 25 H 0.285 0.715 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.130 0.870 29 H 0.125 0.875 30 H 0.131 0.869 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.248 -12.595 -3.314 13.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.147 4.147 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.473 4.473 8 H 0.101 0.899 9 C 0.116 3.884 10 C -0.250 4.250 11 C -0.079 4.079 12 C -0.207 4.207 13 C 0.033 3.967 14 C -0.158 4.158 15 C -0.118 4.118 16 C -0.042 4.042 17 C 0.016 3.984 18 C -0.162 4.162 19 O -0.226 6.226 20 C -0.054 4.054 21 C -0.053 4.053 22 O -0.229 6.229 23 C -0.091 4.091 24 C -0.192 4.192 25 H 0.096 0.904 26 H 0.113 0.887 27 H 0.111 0.889 28 H 0.148 0.852 29 H 0.143 0.857 30 H 0.149 0.851 31 H 0.091 0.909 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.090 0.910 35 H 0.112 0.888 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.454 -12.476 -3.288 13.357 hybrid contribution 0.244 0.458 0.106 0.530 sum -3.210 -12.018 -3.182 12.840 Atomic orbital electron populations 1.69831 1.07777 1.29739 1.32629 1.26040 0.94802 1.01766 0.92086 0.86201 0.81063 0.80431 0.78792 1.18163 1.19455 1.19758 1.19752 0.98399 0.91332 1.37777 0.89904 1.17753 0.90741 0.92099 0.87765 1.20686 1.04282 0.92824 1.07184 1.20421 0.94580 0.96753 0.96180 1.17968 1.01657 0.90525 1.10510 1.18741 0.92826 0.92126 0.93046 1.21006 0.96854 0.97361 1.00612 1.20230 1.01123 0.89344 1.01153 1.18779 0.97018 0.86956 1.01457 1.18764 0.96287 0.85920 0.97410 1.20434 1.02674 0.88741 1.04340 1.86294 1.40619 1.15492 1.80245 1.23531 0.94826 0.89655 0.97404 1.23490 0.98037 0.86713 0.97106 1.86223 1.41588 1.12774 1.82285 1.20523 0.97943 0.92264 0.98384 1.20991 0.99684 0.96985 1.01533 0.90442 0.88694 0.88872 0.85196 0.85661 0.85133 0.90899 0.86696 0.86792 0.91043 0.88832 0.86323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.05 10.96 55.55 0.61 -18.44 16 2 C 0.07 1.74 5.13 -17.34 -0.09 1.65 16 3 Si 0.91 17.62 29.60 -169.99 -5.03 12.59 16 4 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 5 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 6 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 7 C -0.44 -11.24 9.03 -37.89 -0.34 -11.58 16 8 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 9 C 0.12 3.07 5.57 -106.80 -0.60 2.47 16 10 C -0.23 -5.51 9.73 -39.28 -0.38 -5.89 16 11 C -0.06 -1.37 9.36 -39.65 -0.37 -1.74 16 12 C -0.21 -4.57 5.90 -104.64 -0.62 -5.19 16 13 C 0.03 0.66 5.88 -104.89 -0.62 0.04 16 14 C -0.14 -2.50 9.42 -39.20 -0.37 -2.87 16 15 C -0.10 -1.65 9.94 -39.47 -0.39 -2.04 16 16 C 0.00 0.03 6.51 -38.93 -0.25 -0.22 16 17 C 0.06 1.06 6.49 -39.16 -0.25 0.81 16 18 C -0.14 -2.69 9.34 -39.03 -0.36 -3.06 16 19 O -0.31 -4.84 10.41 -32.91 -0.34 -5.19 16 20 C 0.02 0.23 7.26 37.40 0.27 0.50 16 21 C 0.02 0.24 7.26 37.40 0.27 0.51 16 22 O -0.31 -4.64 10.41 -32.66 -0.34 -4.98 16 23 C -0.07 -1.66 9.36 -39.65 -0.37 -2.04 16 24 C -0.17 -4.33 8.63 -39.28 -0.34 -4.67 16 25 H 0.28 6.28 8.30 -40.82 -0.34 5.94 16 26 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 27 H 0.09 1.85 6.17 -52.49 -0.32 1.53 16 28 H 0.13 2.16 6.17 -52.49 -0.32 1.83 16 29 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.13 2.37 6.17 -52.49 -0.32 2.05 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.11 0.79 8.14 -51.92 -0.42 0.36 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 1.90 6.17 -52.49 -0.32 1.58 16 36 H 0.12 3.03 6.16 -52.49 -0.32 2.71 16 LS Contribution 303.22 15.07 4.57 4.57 Total: -1.00 -28.11 303.22 -9.05 -37.17 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -3.70 Total: 7.59 kcal Atomic # 6 Polarization: -28.50 SS G_CDS: -4.81 Total: -33.31 kcal Atomic # 7 Polarization: -19.05 SS G_CDS: 0.61 Total: -18.44 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: -0.68 Total: -10.16 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.03 Total: 12.59 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.11 -9.05 -37.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041308461.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.450 kcal (2) G-P(sol) polarization free energy of solvation -28.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds