Wall clock time and date at job start Tue Mar 31 2020 05:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30815 * 1 3 3 Si 1.86802 * 119.99673 * 2 1 4 4 H 1.48505 * 109.47343 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47081 * 299.99846 * 3 2 1 6 6 H 1.48497 * 109.47501 * 59.99836 * 3 2 1 7 7 C 1.39970 * 120.00351 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99658 * 197.98835 * 7 2 1 9 9 C 1.40986 * 120.00027 * 17.98764 * 7 2 1 10 10 C 1.40953 * 120.11579 * 204.69982 * 9 7 2 11 11 C 1.36210 * 119.88166 * 180.23309 * 10 9 7 12 12 C 1.39997 * 120.11899 * 359.49238 * 11 10 9 13 13 C 1.47875 * 119.88640 * 180.25682 * 12 11 10 14 14 C 1.39697 * 120.09440 * 180.25153 * 13 12 11 15 15 C 1.37793 * 119.96614 * 180.02562 * 14 13 12 16 16 C 1.38976 * 120.26205 * 359.94829 * 15 14 13 17 17 C 1.39264 * 120.04372 * 359.96408 * 16 15 14 18 18 C 1.38335 * 119.95873 * 359.86705 * 17 16 15 19 19 O 1.36138 * 120.75872 * 180.21534 * 17 16 15 20 20 C 1.43173 * 116.69953 * 342.73591 * 19 17 16 21 21 C 1.53468 * 108.22212 * 46.26496 * 20 19 17 22 22 O 1.36059 * 119.24905 * 179.82582 * 16 15 14 23 23 C 1.39997 * 120.22592 * 0.50981 * 12 11 10 24 24 C 1.36216 * 120.11814 * 359.74918 * 23 12 11 25 25 H 0.97002 * 120.00306 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.05457 * 359.95332 * 10 9 7 27 27 H 1.08001 * 119.93940 * 179.72384 * 11 10 9 28 28 H 1.07994 * 120.01972 * 0.02562 * 14 13 12 29 29 H 1.07998 * 119.87179 * 179.97438 * 15 14 13 30 30 H 1.08002 * 120.02286 * 180.18106 * 18 17 16 31 31 H 1.09002 * 109.71283 * 286.58831 * 20 19 17 32 32 H 1.09000 * 109.71356 * 165.95036 * 20 19 17 33 33 H 1.09007 * 109.70045 * 180.47993 * 21 20 19 34 34 H 1.08998 * 109.73948 * 59.89071 * 21 20 19 35 35 H 1.08001 * 119.94141 * 179.77414 * 23 12 11 36 36 H 1.07999 * 120.06145 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.7021 1.3466 -0.0006 5 1 1.8833 2.3965 -1.2125 6 1 1.8833 2.3966 1.2124 7 6 2.0081 -1.2121 0.0005 8 1 3.0485 -1.2347 0.2894 9 6 1.3549 -2.4035 -0.3760 10 6 1.8269 -3.6468 0.0911 11 6 1.1951 -4.7952 -0.2795 12 6 0.0724 -4.7414 -1.1142 13 6 -0.6130 -5.9909 -1.5087 14 6 -1.7305 -5.9427 -2.3456 15 6 -2.3674 -7.1086 -2.7111 16 6 -1.9020 -8.3348 -2.2513 17 6 -0.7874 -8.3896 -1.4182 18 6 -0.1416 -7.2227 -1.0506 19 8 -0.3165 -9.5830 -0.9628 20 6 -1.2061 -10.7014 -1.0509 21 6 -1.8377 -10.7033 -2.4495 22 8 -2.5488 -9.4729 -2.6222 23 6 -0.4005 -3.5091 -1.5808 24 6 0.2273 -2.3552 -1.2204 25 1 -0.4851 0.8400 0.0004 26 1 2.6907 -3.6891 0.7379 27 1 1.5586 -5.7487 0.0742 28 1 -2.0950 -4.9922 -2.7059 29 1 -3.2314 -7.0696 -3.3578 30 1 0.7246 -7.2642 -0.4070 31 1 -1.9864 -10.6108 -0.2952 32 1 -0.6502 -11.6263 -0.8972 33 1 -2.5276 -11.5424 -2.5400 34 1 -1.0572 -10.7861 -3.2058 35 1 -1.2648 -3.4733 -2.2274 36 1 -0.1380 -1.4051 -1.5813 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041308461.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:18 Heat of formation + Delta-G solvation = -48.635973 kcal Electronic energy + Delta-G solvation = -20579.993352 eV Core-core repulsion = 17379.400202 eV Total energy + Delta-G solvation = -3200.593150 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.10285 -39.89460 -38.23274 -38.15625 -35.64647 -32.94046 -32.10828 -31.36646 -30.62573 -29.23578 -26.92995 -25.40693 -24.21015 -22.87470 -22.16163 -21.13686 -19.61475 -19.31481 -18.24199 -17.95816 -17.31402 -16.46676 -16.37000 -15.88421 -15.59666 -15.36735 -15.30762 -14.85333 -14.70490 -14.41174 -14.15151 -13.90981 -13.80830 -13.32920 -13.02880 -12.80461 -12.70910 -12.51063 -12.21610 -11.95620 -11.91099 -11.56312 -11.46107 -11.11443 -11.04736 -9.88981 -9.49772 -9.39030 -8.76013 -8.51210 -6.32261 0.01391 0.39488 1.10212 1.20424 1.39290 1.53612 1.55837 2.12835 2.18656 2.35195 2.58614 2.99247 3.36953 3.72854 3.78180 3.98446 4.03658 4.16098 4.24475 4.28621 4.42856 4.48845 4.53199 4.62316 4.67311 4.90964 5.01683 5.08741 5.17398 5.20105 5.30393 5.36377 5.62024 5.65901 5.71592 5.93726 6.06008 6.06817 6.26600 6.30936 6.50235 6.63079 6.85701 6.98230 8.24175 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.047957 B = 0.003294 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.719031 B = 8497.731604 C = 8974.445508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.035 3.965 3 Si 0.986 3.014 4 H -0.257 1.257 5 H -0.262 1.262 6 H -0.264 1.264 7 C -0.485 4.485 8 H 0.080 0.920 9 C 0.088 3.912 10 C -0.246 4.246 11 C -0.070 4.070 12 C -0.198 4.198 13 C 0.003 3.997 14 C -0.138 4.138 15 C -0.102 4.102 16 C 0.013 3.987 17 C 0.054 3.946 18 C -0.149 4.149 19 O -0.327 6.327 20 C 0.013 3.987 21 C 0.015 3.985 22 O -0.321 6.321 23 C -0.080 4.080 24 C -0.193 4.193 25 H 0.292 0.708 26 H 0.101 0.899 27 H 0.116 0.884 28 H 0.139 0.861 29 H 0.153 0.847 30 H 0.130 0.870 31 H 0.077 0.923 32 H 0.154 0.846 33 H 0.156 0.844 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.215 -14.892 -4.075 16.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.182 4.182 3 Si 0.806 3.194 4 H -0.181 1.181 5 H -0.187 1.187 6 H -0.189 1.189 7 C -0.513 4.513 8 H 0.098 0.902 9 C 0.085 3.915 10 C -0.265 4.265 11 C -0.088 4.088 12 C -0.200 4.200 13 C 0.003 3.997 14 C -0.156 4.156 15 C -0.121 4.121 16 C -0.031 4.031 17 C 0.009 3.991 18 C -0.167 4.167 19 O -0.242 6.242 20 C -0.062 4.062 21 C -0.059 4.059 22 O -0.237 6.237 23 C -0.098 4.098 24 C -0.213 4.213 25 H 0.103 0.897 26 H 0.119 0.881 27 H 0.134 0.866 28 H 0.157 0.843 29 H 0.170 0.830 30 H 0.148 0.852 31 H 0.095 0.905 32 H 0.172 0.828 33 H 0.174 0.826 34 H 0.095 0.905 35 H 0.134 0.866 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.430 -14.815 -4.050 15.984 hybrid contribution 0.385 0.699 0.274 0.844 sum -4.045 -14.115 -3.776 15.161 Atomic orbital electron populations 1.69869 1.09141 1.31040 1.33530 1.26858 0.95522 1.04762 0.91042 0.85105 0.79430 0.75791 0.79105 1.18075 1.18683 1.18894 1.19949 0.98629 0.92507 1.40193 0.90151 1.18085 0.91622 0.93091 0.88693 1.20875 1.04905 0.93040 1.07707 1.20690 0.94651 0.97230 0.96202 1.18291 1.01116 0.91492 1.09060 1.18682 0.94318 0.91439 0.95304 1.21149 0.96119 0.98531 0.99799 1.20508 1.01656 0.88753 1.01135 1.18966 0.96069 0.88076 1.00035 1.18775 0.96323 0.86492 0.97528 1.20484 1.02790 0.89167 1.04271 1.86272 1.42123 1.15756 1.80057 1.23976 0.95157 0.89325 0.97733 1.23919 0.99207 0.85862 0.96946 1.86219 1.42189 1.13405 1.81863 1.20773 0.98475 0.91951 0.98584 1.20981 1.00487 0.97247 1.02538 0.89663 0.88087 0.86634 0.84312 0.82974 0.85246 0.90458 0.82817 0.82612 0.90511 0.86617 0.87631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.30 10.96 21.83 0.24 -41.06 16 2 C 0.04 1.72 5.13 85.26 0.44 2.16 16 3 Si 0.99 36.93 29.60 68.60 2.03 38.96 16 4 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 5 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 6 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 7 C -0.48 -25.71 9.03 23.36 0.21 -25.50 16 8 H 0.08 4.10 7.91 -2.91 -0.02 4.08 16 9 C 0.09 4.73 5.57 -21.27 -0.12 4.62 16 10 C -0.25 -12.24 9.73 22.46 0.22 -12.02 16 11 C -0.07 -3.18 9.36 22.22 0.21 -2.97 16 12 C -0.20 -8.93 5.90 -19.87 -0.12 -9.05 16 13 C 0.00 0.11 5.88 -20.04 -0.12 0.00 16 14 C -0.14 -4.72 9.42 22.52 0.21 -4.51 16 15 C -0.10 -3.10 9.94 22.34 0.22 -2.88 16 16 C 0.01 0.41 6.51 22.69 0.15 0.55 16 17 C 0.05 1.77 6.49 22.54 0.15 1.92 16 18 C -0.15 -5.45 9.34 22.63 0.21 -5.24 16 19 O -0.33 -9.33 10.41 -82.94 -0.86 -10.19 16 20 C 0.01 0.22 7.26 72.14 0.52 0.75 16 21 C 0.02 0.25 7.26 72.14 0.52 0.78 16 22 O -0.32 -8.31 10.41 -82.05 -0.85 -9.17 16 23 C -0.08 -3.73 9.36 22.23 0.21 -3.52 16 24 C -0.19 -10.12 8.63 22.46 0.19 -9.93 16 25 H 0.29 13.29 8.30 -92.71 -0.77 12.52 16 26 H 0.10 4.72 8.06 -2.91 -0.02 4.69 16 27 H 0.12 4.61 6.17 -2.91 -0.02 4.60 16 28 H 0.14 4.40 6.17 -2.91 -0.02 4.38 16 29 H 0.15 3.75 8.06 -2.91 -0.02 3.72 16 30 H 0.13 4.64 6.17 -2.91 -0.02 4.63 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.15 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.16 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.12 4.73 6.17 -2.91 -0.02 4.71 16 36 H 0.11 5.70 6.16 -2.91 -0.02 5.68 16 Total: -1.00 -63.05 303.22 4.78 -58.27 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: 1.11 Total: 28.03 kcal Atomic # 6 Polarization: -67.96 SS G_CDS: 3.11 Total: -64.85 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.24 Total: -41.06 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -1.72 Total: -19.36 kcal Atomic # 14 Polarization: 36.93 SS G_CDS: 2.03 Total: 38.96 kcal Total: -63.05 4.78 -58.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041308461.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.637 kcal (2) G-P(sol) polarization free energy of solvation -63.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds