Wall clock time and date at job start Tue Mar 31 2020 05:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38290 * 119.96861 * 2 1 4 4 C 1.38248 * 120.11009 * 179.72148 * 3 2 1 5 5 C 1.38167 * 120.05588 * 0.54582 * 4 3 2 6 6 C 1.38716 * 119.93994 * 359.72631 * 5 4 3 7 7 O 1.35914 * 120.05208 * 179.97438 * 6 5 4 8 8 C 1.34728 * 116.99835 * 77.35492 * 7 6 5 9 9 O 1.21475 * 119.99912 * 4.51645 * 8 7 6 10 10 C 1.47745 * 119.99875 * 184.51346 * 8 7 6 11 11 C 1.39975 * 120.03310 * 359.72369 * 10 8 7 12 12 C 1.38317 * 120.35266 * 179.76332 * 11 10 8 13 13 C 1.37767 * 120.41838 * 0.51603 * 12 11 10 14 14 C 1.40751 * 120.05169 * 359.74612 * 13 12 11 15 15 C 1.41442 * 120.17545 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99770 * 152.49819 * 15 14 13 17 17 C 1.39930 * 119.99781 * 332.49610 * 15 14 13 18 18 N 1.30828 * 119.99773 * 162.72215 * 17 15 14 19 19 Si 1.86792 * 120.00188 * 342.72120 * 17 15 14 20 20 H 1.48500 * 109.47231 * 95.23943 * 19 17 15 21 21 H 1.48501 * 109.47411 * 215.23874 * 19 17 15 22 22 H 1.48500 * 109.47319 * 335.23660 * 19 17 15 23 23 C 1.39064 * 120.03065 * 180.02562 * 10 8 7 24 24 C 1.38122 * 119.96992 * 180.26349 * 2 1 3 25 25 H 1.09003 * 109.47699 * 269.73078 * 1 2 3 26 26 H 1.08995 * 109.47292 * 29.73502 * 1 2 3 27 27 H 1.09004 * 109.46973 * 149.72938 * 1 2 3 28 28 H 1.07997 * 119.94704 * 359.96982 * 3 2 1 29 29 H 1.08002 * 119.97000 * 180.26798 * 4 3 2 30 30 H 1.07999 * 120.02557 * 179.70025 * 5 4 3 31 31 H 1.07997 * 119.82262 * 0.02611 * 11 10 8 32 32 H 1.07995 * 119.79336 * 180.25811 * 12 11 10 33 33 H 1.07995 * 119.97107 * 179.76200 * 13 12 11 34 34 H 0.97005 * 119.99930 * 179.97438 * 18 17 15 35 35 H 1.07995 * 120.20667 * 359.95649 * 23 10 8 36 36 H 1.07997 * 120.03111 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5802 1.2014 0.0058 5 6 4.2752 0.0073 0.0002 6 6 3.5846 -1.1957 -0.0054 7 8 4.2659 -2.3717 -0.0115 8 6 4.8003 -2.7749 1.1577 9 8 4.5932 -2.1388 2.1717 10 6 5.6382 -3.9908 1.2067 11 6 5.8725 -4.7276 0.0398 12 6 6.6599 -5.8641 0.0771 13 6 7.2139 -6.2903 1.2643 14 6 6.9851 -5.5657 2.4491 15 6 7.5529 -6.0005 3.6693 16 1 7.7713 -5.2852 4.4485 17 6 7.8318 -7.3574 3.8669 18 7 8.6475 -7.7253 4.8214 19 14 7.0396 -8.6435 2.7680 20 1 7.9653 -8.9843 1.6580 21 1 6.7500 -9.8637 3.5633 22 1 5.7735 -8.1050 2.2091 23 6 6.1897 -4.4079 2.4132 24 6 2.1970 -1.1965 -0.0055 25 1 -0.3634 -0.0048 1.0276 26 1 -0.3633 0.8923 -0.5097 27 1 -0.3633 -0.8876 -0.5181 28 1 1.6564 2.1325 -0.0005 29 1 4.1174 2.1384 0.0102 30 1 5.3552 0.0105 -0.0001 31 1 5.4397 -4.4045 -0.8954 32 1 6.8382 -6.4234 -0.8294 33 1 7.8243 -7.1809 1.2858 34 1 8.8406 -8.6660 4.9586 35 1 6.0083 -3.8451 3.3169 36 1 1.6570 -2.1318 -0.0094 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042193820.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:43 Heat of formation + Delta-G solvation = -39.436315 kcal Electronic energy + Delta-G solvation = -20424.337124 eV Core-core repulsion = 17224.142902 eV Total energy + Delta-G solvation = -3200.194223 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.97201 -38.90340 -37.72315 -36.33653 -33.79115 -32.73606 -31.09510 -30.34871 -29.97508 -27.09154 -25.50809 -24.39041 -22.49467 -21.79191 -20.76912 -20.19726 -18.10436 -17.48335 -16.46506 -16.35946 -16.30837 -15.63786 -14.73588 -14.54054 -14.37529 -13.95075 -13.84173 -13.57495 -13.25602 -12.86804 -12.80449 -12.56594 -12.15255 -12.07264 -11.82957 -11.65440 -11.55080 -11.17587 -10.88604 -10.69498 -10.59334 -10.20440 -9.98330 -9.73739 -9.32631 -8.91857 -8.66870 -8.03496 -7.88542 -7.08166 -4.63629 1.05450 1.23626 1.58109 2.44054 2.99167 3.00438 3.12778 3.16228 3.27089 3.73940 3.86043 4.35977 4.65355 4.74412 4.89032 5.04853 5.19030 5.22140 5.29076 5.41438 5.46341 5.61420 5.77157 5.89216 5.93336 6.07926 6.22760 6.28169 6.33349 6.39824 6.54473 6.56514 6.58604 6.86077 6.95682 7.11237 7.32443 7.40996 7.63321 7.80238 8.18534 8.26382 8.41694 8.61758 9.93663 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.034451 B = 0.003512 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.552698 B = 7971.488451 C = 8080.540082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.076 4.076 3 C -0.125 4.125 4 C -0.102 4.102 5 C -0.130 4.130 6 C 0.099 3.901 7 O -0.295 6.295 8 C 0.511 3.489 9 O -0.500 6.500 10 C -0.094 4.094 11 C -0.195 4.195 12 C -0.086 4.086 13 C -0.215 4.215 14 C 0.079 3.921 15 C -0.439 4.439 16 H 0.095 0.905 17 C 0.082 3.918 18 N -0.800 5.800 19 Si 0.912 3.088 20 H -0.269 1.269 21 H -0.289 1.289 22 H -0.242 1.242 23 C -0.133 4.133 24 C -0.122 4.122 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.125 0.875 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.288 0.712 35 H 0.118 0.882 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.670 10.314 -9.916 17.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.076 4.076 3 C -0.143 4.143 4 C -0.120 4.120 5 C -0.148 4.148 6 C 0.058 3.942 7 O -0.211 6.211 8 C 0.359 3.641 9 O -0.387 6.387 10 C -0.095 4.095 11 C -0.214 4.214 12 C -0.104 4.104 13 C -0.234 4.234 14 C 0.076 3.924 15 C -0.466 4.466 16 H 0.113 0.887 17 C -0.138 4.138 18 N -0.424 5.424 19 Si 0.739 3.261 20 H -0.195 1.195 21 H -0.216 1.216 22 H -0.165 1.165 23 C -0.153 4.153 24 C -0.140 4.140 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.143 0.857 29 H 0.146 0.854 30 H 0.146 0.854 31 H 0.128 0.872 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.099 0.901 35 H 0.136 0.864 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.594 10.343 -9.381 17.528 hybrid contribution -0.092 -0.619 -0.319 0.702 sum -10.687 9.724 -9.700 17.403 Atomic orbital electron populations 1.20793 0.90681 1.02875 1.02608 1.19757 0.96240 0.92397 0.99198 1.21065 0.94205 0.97540 1.01470 1.20984 0.94186 0.97469 0.99349 1.21357 1.00686 0.91808 1.00950 1.18568 0.90446 0.84380 1.00821 1.84708 1.63887 1.35986 1.36492 1.22201 0.76896 0.85040 0.79976 1.90800 1.57514 1.55877 1.34526 1.18686 1.01412 0.93164 0.96238 1.20607 1.05972 0.98505 0.96345 1.20570 0.96966 0.95959 0.96916 1.21241 1.06263 1.02989 0.92926 1.17626 0.90178 0.91394 0.93191 1.19527 1.32922 0.93992 1.00198 0.88730 1.26192 0.92344 1.00183 0.95063 1.69675 1.24859 1.19751 1.28078 0.86304 0.82179 0.78459 0.79187 1.19482 1.21644 1.16512 1.21249 0.99372 0.99503 0.95154 1.21085 0.92530 0.98774 1.01642 0.90911 0.91358 0.91346 0.85701 0.85351 0.85414 0.87179 0.87812 0.87673 0.90148 0.86423 0.85208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16 2 C -0.08 -0.88 5.88 -104.65 -0.62 -1.49 16 3 C -0.12 -1.34 9.70 -39.56 -0.38 -1.73 16 4 C -0.10 -1.19 10.04 -39.60 -0.40 -1.58 16 5 C -0.13 -1.87 9.76 -39.43 -0.38 -2.26 16 6 C 0.10 1.61 5.05 -39.21 -0.20 1.41 16 7 O -0.29 -5.38 9.26 -24.81 -0.23 -5.61 16 8 C 0.51 10.57 7.76 34.62 0.27 10.83 16 9 O -0.50 -11.24 16.02 -19.25 -0.31 -11.55 16 10 C -0.09 -2.05 5.87 -105.06 -0.62 -2.66 16 11 C -0.19 -3.94 9.62 -38.90 -0.37 -4.32 16 12 C -0.09 -1.76 10.01 -39.72 -0.40 -2.15 16 13 C -0.21 -4.93 7.09 -38.80 -0.28 -5.21 16 14 C 0.08 1.96 5.17 -106.87 -0.55 1.40 16 15 C -0.44 -11.54 9.59 -37.73 -0.36 -11.90 16 16 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 17 C 0.08 2.08 5.43 -17.35 -0.09 1.99 16 18 N -0.80 -20.68 13.93 55.55 0.77 -19.91 16 19 Si 0.91 19.91 24.42 -169.99 -4.15 15.76 16 20 H -0.27 -5.61 6.69 56.52 0.38 -5.24 16 21 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.24 -5.40 6.73 56.52 0.38 -5.02 16 23 C -0.13 -3.15 9.34 -38.42 -0.36 -3.51 16 24 C -0.12 -1.72 9.64 -39.43 -0.38 -2.10 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 27 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 28 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 29 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 30 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.11 1.98 7.59 -52.49 -0.40 1.58 16 32 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 33 H 0.11 2.37 4.33 -52.49 -0.23 2.15 16 34 H 0.29 6.70 8.30 -40.82 -0.34 6.36 16 35 H 0.12 2.79 7.64 -52.49 -0.40 2.39 16 36 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 314.62 15.07 4.74 4.74 Total: -1.00 -28.26 314.62 -7.94 -36.20 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -4.01 Total: 4.22 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: -4.76 Total: -23.85 kcal Atomic # 7 Polarization: -20.68 SS G_CDS: 0.77 Total: -19.91 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -0.54 Total: -17.16 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.15 Total: 15.76 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.26 -7.94 -36.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042193820.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.238 kcal (2) G-P(sol) polarization free energy of solvation -28.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds