Wall clock time and date at job start Tue Mar 31 2020 05:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38167 * 120.03170 * 2 1 4 4 C 1.38245 * 120.05771 * 180.29534 * 3 2 1 5 5 C 1.38292 * 120.11365 * 359.72534 * 4 3 2 6 6 C 1.38125 * 120.05434 * 359.97438 * 5 4 3 7 7 C 1.38722 * 120.02827 * 179.72468 * 2 1 3 8 8 O 1.35906 * 120.05653 * 359.97419 * 7 2 1 9 9 C 1.34723 * 117.00119 * 269.83306 * 8 7 2 10 10 O 1.21468 * 119.99968 * 5.10430 * 9 8 7 11 11 C 1.47755 * 119.99763 * 185.11044 * 9 8 7 12 12 C 1.39979 * 120.03392 * 359.71737 * 11 9 8 13 13 C 1.38316 * 120.35361 * 179.71761 * 12 11 9 14 14 C 1.37765 * 120.41563 * 0.56486 * 13 12 11 15 15 C 1.40749 * 120.05471 * 359.71772 * 14 13 12 16 16 C 1.41438 * 120.17531 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00290 * 26.36132 * 16 15 14 18 18 C 1.39940 * 119.99711 * 206.35668 * 16 15 14 19 19 N 1.30821 * 120.00274 * 15.83269 * 18 16 15 20 20 Si 1.86800 * 119.99804 * 195.83048 * 18 16 15 21 21 H 1.48503 * 109.47002 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47028 * 120.00046 * 20 18 16 23 23 H 1.48502 * 109.47109 * 240.00282 * 20 18 16 24 24 C 1.39057 * 120.03331 * 179.97438 * 11 9 8 25 25 H 1.08994 * 109.47568 * 270.27398 * 1 2 3 26 26 H 1.09003 * 109.46911 * 30.28027 * 1 2 3 27 27 H 1.09003 * 109.46816 * 150.26895 * 1 2 3 28 28 H 1.08002 * 119.96706 * 0.02562 * 3 2 1 29 29 H 1.07999 * 119.94037 * 179.74654 * 4 3 2 30 30 H 1.07992 * 119.97088 * 180.02562 * 5 4 3 31 31 H 1.07994 * 120.02678 * 179.97438 * 6 5 4 32 32 H 1.08004 * 119.82153 * 359.97438 * 12 11 9 33 33 H 1.07997 * 119.79151 * 180.25832 * 13 12 11 34 34 H 1.07997 * 119.96690 * 179.74171 * 14 13 12 35 35 H 0.97003 * 120.00477 * 179.97438 * 19 18 16 36 36 H 1.08000 * 120.19948 * 359.97438 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5810 1.1968 -0.0062 5 6 4.2754 0.0009 -0.0066 6 6 3.5888 -1.1977 -0.0004 7 6 2.2012 -1.2010 0.0058 8 8 1.5235 -2.3790 0.0120 9 6 1.2219 -2.9048 1.2151 10 8 1.4718 -2.2844 2.2290 11 6 0.5873 -4.2364 1.3013 12 6 0.2938 -4.9495 0.1331 13 6 -0.2949 -6.1990 0.2062 14 6 -0.6097 -6.7512 1.4285 15 6 -0.3276 -6.0468 2.6139 16 6 -0.6492 -6.6116 3.8701 17 1 -0.7020 -7.6844 3.9823 18 6 -0.8988 -5.7801 4.9677 19 7 -1.1417 -4.5080 4.7829 20 14 -0.8853 -6.4868 6.6969 21 1 -0.5869 -7.9402 6.6353 22 1 0.1566 -5.8018 7.5034 23 1 -2.2143 -6.2801 7.3265 24 6 0.2763 -4.7801 2.5428 25 1 -0.3634 0.0049 1.0276 26 1 -0.3633 0.8875 -0.5182 27 1 -0.3633 -0.8924 -0.5097 28 1 1.6585 2.1315 0.0004 29 1 4.1196 2.1329 -0.0103 30 1 5.3553 0.0040 -0.0110 31 1 4.1315 -2.1313 -0.0011 32 1 0.5320 -4.5235 -0.8304 33 1 -0.5137 -6.7430 -0.7007 34 1 -1.0730 -7.7255 1.4770 35 1 -1.3151 -3.9318 5.5437 36 1 0.4974 -4.2320 3.4467 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042193852.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:45 Heat of formation + Delta-G solvation = -41.041780 kcal Electronic energy + Delta-G solvation = -20914.604541 eV Core-core repulsion = 17714.340700 eV Total energy + Delta-G solvation = -3200.263841 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.84790 -38.63543 -37.37967 -36.02233 -33.79172 -32.68538 -30.75112 -29.88625 -29.54852 -26.86995 -25.46216 -24.09351 -22.23100 -21.41149 -21.01290 -19.91155 -18.02230 -17.38733 -16.30026 -16.11750 -15.84483 -15.15535 -14.77132 -14.39819 -14.18113 -13.78281 -13.49635 -13.23324 -13.15927 -12.77220 -12.56253 -12.30580 -11.93481 -11.82962 -11.59440 -11.33622 -11.23346 -11.15247 -10.81485 -10.55912 -10.37927 -10.30055 -9.79215 -9.65660 -9.30896 -8.80938 -8.50241 -7.81746 -7.60197 -6.86071 -4.49437 1.18348 1.35785 1.87592 2.72361 3.04568 3.07705 3.10070 3.21622 3.49401 3.87483 3.90318 4.53056 4.82898 4.85196 5.01054 5.24806 5.28759 5.46271 5.48720 5.68322 5.78430 5.86007 5.95647 6.11195 6.23539 6.33218 6.34838 6.44707 6.54644 6.58933 6.77683 6.87851 6.90292 7.10493 7.15336 7.24956 7.61406 7.69369 7.84952 8.04379 8.38981 8.52227 8.71358 8.73989 10.09566 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.021596 B = 0.004437 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.211695 B = 6309.378605 C = 6945.104923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.084 4.084 3 C -0.112 4.112 4 C -0.121 4.121 5 C -0.115 4.115 6 C -0.120 4.120 7 C 0.094 3.906 8 O -0.296 6.296 9 C 0.511 3.489 10 O -0.499 6.499 11 C -0.115 4.115 12 C -0.193 4.193 13 C -0.103 4.103 14 C -0.198 4.198 15 C 0.096 3.904 16 C -0.460 4.460 17 H 0.083 0.917 18 C 0.073 3.927 19 N -0.790 5.790 20 Si 0.911 3.089 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.273 1.273 24 C -0.085 4.085 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.127 0.873 29 H 0.124 0.876 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.284 0.716 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.268 7.791 -7.138 11.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.085 4.085 3 C -0.130 4.130 4 C -0.139 4.139 5 C -0.133 4.133 6 C -0.138 4.138 7 C 0.052 3.948 8 O -0.213 6.213 9 C 0.359 3.641 10 O -0.386 6.386 11 C -0.116 4.116 12 C -0.213 4.213 13 C -0.121 4.121 14 C -0.218 4.218 15 C 0.094 3.906 16 C -0.489 4.489 17 H 0.102 0.898 18 C -0.146 4.146 19 N -0.414 5.414 20 Si 0.735 3.265 21 H -0.183 1.183 22 H -0.196 1.196 23 H -0.199 1.199 24 C -0.105 4.105 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.145 0.855 29 H 0.142 0.858 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.096 0.904 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.257 8.213 -6.678 11.819 hybrid contribution 0.009 -0.098 0.804 0.810 sum 5.267 8.115 -5.875 11.319 Atomic orbital electron populations 1.20781 0.90528 1.03158 1.03073 1.20141 0.96947 0.92199 0.99197 1.20910 0.94215 0.96918 1.00934 1.21144 0.94211 0.98081 1.00428 1.20957 0.99862 0.91769 1.00743 1.21304 0.92877 0.99300 1.00353 1.18422 0.90250 0.84286 1.01816 1.84681 1.68121 1.34202 1.34250 1.22264 0.75280 0.86686 0.79906 1.90792 1.50784 1.61260 1.35755 1.18778 1.06448 0.90334 0.96027 1.20586 1.08350 0.96559 0.95772 1.20520 0.99765 0.95173 0.96675 1.21228 1.07040 1.01337 0.92213 1.17541 0.89241 0.90978 0.92864 1.19607 1.41722 0.94790 0.92792 0.89844 1.25961 0.92291 0.94530 1.01811 1.69765 1.32266 1.05593 1.33809 0.86205 0.78708 0.80459 0.81091 1.18281 1.19571 1.19851 1.21661 0.96960 0.96893 0.94962 0.90667 0.91228 0.90774 0.85535 0.85780 0.85530 0.85336 0.87789 0.88386 0.88210 0.90445 0.84686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 9.77 36.01 0.35 -1.38 16 2 C -0.08 -1.33 5.89 -104.47 -0.62 -1.95 16 3 C -0.11 -1.44 9.70 -39.60 -0.38 -1.83 16 4 C -0.12 -1.42 10.04 -39.56 -0.40 -1.82 16 5 C -0.12 -1.45 10.04 -39.60 -0.40 -1.85 16 6 C -0.12 -1.85 9.99 -39.43 -0.39 -2.25 16 7 C 0.09 1.66 4.90 -39.21 -0.19 1.47 16 8 O -0.30 -5.89 8.31 -24.77 -0.21 -6.09 16 9 C 0.51 11.64 7.82 34.62 0.27 11.91 16 10 O -0.50 -12.45 16.11 -19.24 -0.31 -12.76 16 11 C -0.11 -2.75 5.87 -105.05 -0.62 -3.36 16 12 C -0.19 -4.20 9.62 -38.90 -0.37 -4.58 16 13 C -0.10 -2.18 10.01 -39.73 -0.40 -2.58 16 14 C -0.20 -4.60 9.78 -38.81 -0.38 -4.98 16 15 C 0.10 2.49 5.56 -106.88 -0.59 1.90 16 16 C -0.46 -11.82 9.05 -37.73 -0.34 -12.16 16 17 H 0.08 2.03 7.89 -52.49 -0.41 1.62 16 18 C 0.07 1.80 5.17 -17.34 -0.09 1.71 16 19 N -0.79 -20.56 10.96 55.55 0.61 -19.95 16 20 Si 0.91 18.45 29.59 -169.99 -5.03 13.42 16 21 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 24 C -0.09 -2.24 8.22 -38.42 -0.32 -2.56 16 25 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 27 H 0.07 1.15 7.53 -51.93 -0.39 0.75 16 28 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 30 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 32 H 0.10 2.04 7.59 -52.48 -0.40 1.64 16 33 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.10 2.13 8.06 -52.49 -0.42 1.70 16 35 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 36 H 0.14 3.80 5.81 -52.49 -0.30 3.50 16 LS Contribution 319.42 15.07 4.81 4.81 Total: -1.00 -28.84 319.42 -9.01 -37.85 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -4.02 Total: 7.02 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: -4.87 Total: -24.30 kcal Atomic # 7 Polarization: -20.56 SS G_CDS: 0.61 Total: -19.95 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.52 Total: -18.85 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.42 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.84 -9.01 -37.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042193852.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.190 kcal (2) G-P(sol) polarization free energy of solvation -28.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds