Wall clock time and date at job start Tue Mar 31 2020 05:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38265 * 119.94468 * 2 1 4 4 C 1.38143 * 120.05343 * 179.74473 * 3 2 1 5 5 C 1.38744 * 119.94188 * 0.26176 * 4 3 2 6 6 O 1.35911 * 120.05179 * 180.02562 * 5 4 3 7 7 C 1.34720 * 116.99962 * 77.33388 * 6 5 4 8 8 O 1.21471 * 120.00249 * 4.50978 * 7 6 5 9 9 C 1.47757 * 120.00120 * 184.51061 * 7 6 5 10 10 C 1.39973 * 120.02872 * 359.72573 * 9 7 6 11 11 C 1.38310 * 120.35273 * 179.73533 * 10 9 7 12 12 C 1.37763 * 120.41957 * 0.51978 * 11 10 9 13 13 C 1.40763 * 120.05012 * 359.75666 * 12 11 10 14 14 C 1.41434 * 120.17358 * 179.97438 * 13 12 11 15 15 H 1.08008 * 119.99690 * 152.49706 * 14 13 12 16 16 C 1.39932 * 120.00645 * 332.49780 * 14 13 12 17 17 N 1.30827 * 120.00377 * 162.71636 * 16 14 13 18 18 Si 1.86799 * 119.99574 * 342.72532 * 16 14 13 19 19 H 1.48502 * 109.47249 * 95.23868 * 18 16 14 20 20 H 1.48507 * 109.46839 * 215.23535 * 18 16 14 21 21 H 1.48493 * 109.47290 * 335.23219 * 18 16 14 22 22 C 1.39054 * 120.03277 * 179.97438 * 9 7 6 23 23 C 1.38738 * 119.88852 * 359.97438 * 5 4 3 24 24 C 1.38139 * 119.94546 * 0.02562 * 23 5 4 25 25 H 1.08995 * 109.47457 * 89.99115 * 1 2 3 26 26 H 1.09001 * 109.47378 * 210.00317 * 1 2 3 27 27 H 1.09005 * 109.46730 * 329.99679 * 1 2 3 28 28 H 1.07993 * 119.97302 * 0.02664 * 3 2 1 29 29 H 1.08002 * 120.02738 * 180.27401 * 4 3 2 30 30 H 1.08003 * 119.82259 * 359.97438 * 10 9 7 31 31 H 1.08004 * 119.79311 * 180.23854 * 11 10 9 32 32 H 1.08000 * 119.98045 * 179.74006 * 12 11 10 33 33 H 0.96996 * 119.99812 * 180.02562 * 17 16 14 34 34 H 1.07997 * 120.20331 * 359.97438 * 22 9 7 35 35 H 1.07999 * 120.02628 * 179.97438 * 23 5 4 36 36 H 1.07999 * 119.97102 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2007 0.0053 5 6 4.2734 -0.0002 0.0052 6 8 5.6325 -0.0003 0.0109 7 6 6.2391 0.2599 1.1854 8 8 5.5762 0.3997 2.1936 9 6 7.7109 0.3753 1.2471 10 6 8.4759 0.2087 0.0867 11 6 9.8536 0.3207 0.1358 12 6 10.4897 0.5868 1.3284 13 6 9.7378 0.7518 2.5069 14 6 10.3883 1.0245 3.7328 15 1 9.8723 1.5719 4.5079 16 6 11.7004 0.5853 3.9417 17 7 12.4195 1.1061 4.9025 18 14 12.4252 -0.7447 2.8484 19 1 13.1939 -0.1142 1.7453 20 1 13.3288 -1.6074 3.6513 21 1 11.3293 -1.5697 2.2797 22 6 8.3377 0.6444 2.4588 23 6 3.5785 -1.2010 0.0002 24 6 2.1971 -1.1982 -0.0051 25 1 -0.3634 0.0002 -1.0276 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6559 2.1326 0.0004 29 1 4.1173 2.1368 0.0098 30 1 7.9874 -0.0046 -0.8526 31 1 10.4347 0.1942 -0.7657 32 1 11.5662 0.6686 1.3594 33 1 13.3291 0.8019 5.0470 34 1 7.7519 0.7701 3.3574 35 1 4.1170 -2.1371 -0.0003 36 1 1.6557 -2.1327 -0.0085 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042193970.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:47 Heat of formation + Delta-G solvation = -39.487523 kcal Electronic energy + Delta-G solvation = -20360.117024 eV Core-core repulsion = 17159.920581 eV Total energy + Delta-G solvation = -3200.196443 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.96058 -38.91289 -37.73258 -36.35469 -33.79099 -32.28902 -31.11811 -30.82255 -30.18016 -26.92877 -25.35317 -23.95663 -22.96651 -21.69368 -20.77197 -20.36861 -18.19175 -17.66902 -16.43223 -16.35386 -15.78823 -15.52232 -14.74231 -14.60868 -14.45431 -13.95703 -13.81038 -13.59447 -13.53738 -12.86005 -12.80561 -12.60358 -12.15582 -12.06326 -11.76549 -11.62024 -11.56190 -11.17259 -10.88195 -10.68587 -10.57608 -10.19539 -9.97643 -9.73456 -9.32212 -9.08065 -8.54982 -8.03186 -7.88261 -7.07974 -4.63379 1.02835 1.26441 1.58594 2.44317 2.99288 3.00476 3.12964 3.16568 3.27460 3.74692 3.86203 4.36264 4.69261 4.69968 4.82010 5.09978 5.13836 5.22774 5.25045 5.37297 5.55499 5.60883 5.78568 5.88335 5.90891 6.08227 6.14655 6.27730 6.33763 6.42549 6.54818 6.56846 6.59440 6.86362 6.95675 7.11488 7.32795 7.41325 7.63565 7.80549 8.18729 8.27186 8.41984 8.61960 9.93831 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.040312 B = 0.003397 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.415740 B = 8240.437428 C = 8486.874901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.092 4.092 3 C -0.107 4.107 4 C -0.119 4.119 5 C 0.089 3.911 6 O -0.294 6.294 7 C 0.511 3.489 8 O -0.500 6.500 9 C -0.094 4.094 10 C -0.195 4.195 11 C -0.086 4.086 12 C -0.215 4.215 13 C 0.079 3.921 14 C -0.438 4.438 15 H 0.095 0.905 16 C 0.082 3.918 17 N -0.800 5.800 18 Si 0.912 3.088 19 H -0.269 1.269 20 H -0.289 1.289 21 H -0.242 1.242 22 C -0.133 4.133 23 C -0.116 4.116 24 C -0.108 4.108 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.288 0.712 34 H 0.118 0.882 35 H 0.131 0.869 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.724 -3.134 -10.078 18.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 C -0.125 4.125 4 C -0.138 4.138 5 C 0.048 3.952 6 O -0.210 6.210 7 C 0.358 3.642 8 O -0.388 6.388 9 C -0.095 4.095 10 C -0.214 4.214 11 C -0.104 4.104 12 C -0.234 4.234 13 C 0.076 3.924 14 C -0.466 4.466 15 H 0.113 0.887 16 C -0.138 4.138 17 N -0.424 5.424 18 Si 0.739 3.261 19 H -0.195 1.195 20 H -0.217 1.217 21 H -0.165 1.165 22 C -0.153 4.153 23 C -0.135 4.135 24 C -0.126 4.126 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.146 0.854 29 H 0.146 0.854 30 H 0.128 0.872 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.099 0.901 34 H 0.136 0.864 35 H 0.149 0.851 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.719 -3.051 -9.540 17.803 hybrid contribution 0.527 -0.461 -0.323 0.771 sum -14.192 -3.511 -9.862 17.635 Atomic orbital electron populations 1.20778 0.90929 1.02900 1.02287 1.19975 0.96288 0.93117 0.99875 1.20875 0.93172 0.97870 1.00543 1.21357 0.94810 0.97583 1.00010 1.18590 0.81399 0.93519 1.01731 1.84714 1.17778 1.82266 1.36258 1.22211 0.89846 0.72164 0.79954 1.90798 1.66602 1.46267 1.35093 1.18688 0.85904 1.08683 0.96219 1.20605 0.93613 1.10796 0.96409 1.20569 0.93932 0.99046 0.96874 1.21242 0.98735 1.10531 0.92927 1.17628 0.91055 0.90506 0.93215 1.19523 0.96903 1.30187 1.00005 0.88737 1.26194 0.96067 0.96484 0.95046 1.69672 1.09508 1.35388 1.27793 0.86304 0.79571 0.81075 0.79174 1.19484 1.21663 1.16502 1.21244 0.94523 1.04427 0.95088 1.21211 0.94476 0.97394 1.00393 1.20874 0.93125 0.97845 1.00769 0.91123 0.91468 0.91462 0.85435 0.85360 0.87182 0.87819 0.87677 0.90150 0.86432 0.85128 0.85375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.01 36.01 0.36 -0.48 16 2 C -0.09 -1.00 5.88 -104.60 -0.62 -1.62 16 3 C -0.11 -1.26 9.69 -39.61 -0.38 -1.64 16 4 C -0.12 -1.72 9.76 -39.43 -0.38 -2.11 16 5 C 0.09 1.44 5.06 -39.21 -0.20 1.24 16 6 O -0.29 -5.36 9.26 -24.78 -0.23 -5.59 16 7 C 0.51 10.54 7.76 34.62 0.27 10.81 16 8 O -0.50 -11.24 16.02 -19.24 -0.31 -11.55 16 9 C -0.09 -2.04 5.87 -105.05 -0.62 -2.66 16 10 C -0.19 -3.94 9.62 -38.91 -0.37 -4.31 16 11 C -0.09 -1.76 10.01 -39.73 -0.40 -2.16 16 12 C -0.22 -4.94 7.09 -38.80 -0.28 -5.21 16 13 C 0.08 1.95 5.17 -106.87 -0.55 1.40 16 14 C -0.44 -11.53 9.59 -37.73 -0.36 -11.90 16 15 H 0.09 2.61 8.06 -52.48 -0.42 2.18 16 16 C 0.08 2.08 5.43 -17.35 -0.09 1.99 16 17 N -0.80 -20.69 13.93 55.55 0.77 -19.91 16 18 Si 0.91 19.93 24.42 -169.99 -4.15 15.78 16 19 H -0.27 -5.62 6.69 56.52 0.38 -5.24 16 20 H -0.29 -6.12 7.11 56.52 0.40 -5.71 16 21 H -0.24 -5.40 6.73 56.52 0.38 -5.02 16 22 C -0.13 -3.16 9.34 -38.42 -0.36 -3.52 16 23 C -0.12 -1.61 9.99 -39.43 -0.39 -2.00 16 24 C -0.11 -1.23 9.69 -39.60 -0.38 -1.61 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 27 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 28 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 29 H 0.13 1.78 8.06 -52.49 -0.42 1.35 16 30 H 0.11 1.97 7.59 -52.48 -0.40 1.58 16 31 H 0.10 1.79 8.06 -52.48 -0.42 1.37 16 32 H 0.11 2.37 4.33 -52.49 -0.23 2.15 16 33 H 0.29 6.70 8.30 -40.82 -0.34 6.36 16 34 H 0.12 2.79 7.64 -52.49 -0.40 2.39 16 35 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 36 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 314.62 15.07 4.74 4.74 Total: -1.00 -28.27 314.62 -7.94 -36.21 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -4.01 Total: 4.11 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: -4.76 Total: -23.78 kcal Atomic # 7 Polarization: -20.69 SS G_CDS: 0.77 Total: -19.91 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.54 Total: -17.14 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -4.15 Total: 15.78 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.27 -7.94 -36.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042193970.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.281 kcal (2) G-P(sol) polarization free energy of solvation -28.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds