Wall clock time and date at job start Tue Mar 31 2020 05:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46908 * 2 1 4 4 N 1.46503 * 109.46868 * 119.99629 * 2 1 3 5 5 C 1.46498 * 120.00035 * 304.67587 * 4 2 1 6 6 C 1.50697 * 109.46920 * 263.40025 * 5 4 2 7 7 H 1.08001 * 120.00430 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99753 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00491 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99996 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47502 * 90.00250 * 10 8 6 12 12 H 1.48503 * 109.47197 * 210.00226 * 10 8 6 13 13 H 1.48499 * 109.47002 * 330.00077 * 10 8 6 14 14 C 1.34778 * 119.99579 * 124.67544 * 4 2 1 15 15 O 1.21690 * 120.00475 * 4.33338 * 14 4 2 16 16 C 1.46660 * 119.99591 * 184.33423 * 14 4 2 17 17 C 1.36549 * 125.98628 * 173.94696 * 16 14 4 18 18 C 1.40363 * 106.70795 * 179.97438 * 17 16 14 19 19 C 1.35133 * 107.11659 * 359.97438 * 18 17 16 20 20 N 1.48023 * 125.61749 * 179.73569 * 19 18 17 21 21 O 1.21796 * 120.00092 * 0.02562 * 20 19 18 22 22 O 1.21805 * 120.00140 * 180.02562 * 20 19 18 23 23 O 1.33933 * 108.76387 * 0.02562 * 19 18 17 24 24 H 1.08999 * 109.47208 * 300.00559 * 1 2 3 25 25 H 1.09006 * 109.46596 * 60.00296 * 1 2 3 26 26 H 1.08995 * 109.47051 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47208 * 239.99441 * 2 1 3 28 28 H 1.09009 * 109.46972 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47082 * 299.99079 * 3 2 1 30 30 H 1.08997 * 109.47350 * 60.00158 * 3 2 1 31 31 H 1.08995 * 109.47051 * 23.40478 * 5 4 2 32 32 H 1.09000 * 109.47210 * 143.40520 * 5 4 2 33 33 H 0.97000 * 120.00297 * 180.02562 * 9 8 6 34 34 H 1.07993 * 126.64561 * 359.97085 * 17 16 14 35 35 H 1.07995 * 126.44318 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.5819 -0.2525 2.5243 6 6 2.6175 0.6695 3.1146 7 1 3.5112 0.9059 2.5561 8 6 2.4237 1.2121 4.3672 9 7 1.3352 0.9247 5.0471 10 14 3.7070 2.3555 5.0986 11 1 3.3973 3.7566 4.7162 12 1 3.6943 2.2319 6.5784 13 1 5.0499 1.9869 4.5827 14 6 2.8690 -1.7289 1.0748 15 8 3.2933 -2.0429 -0.0216 16 6 3.2833 -2.4803 2.2642 17 6 4.0413 -3.6160 2.2721 18 6 4.1932 -3.9905 3.6162 19 6 3.5302 -3.0782 4.3607 20 7 3.4207 -3.0854 5.8368 21 8 3.9568 -3.9678 6.4830 22 8 2.7946 -2.2089 6.4054 23 8 2.9831 -2.1700 3.5424 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.6320 0.2752 2.4389 32 1 1.4581 -1.1212 3.1710 33 1 1.1986 1.3068 5.9282 34 1 4.4455 -4.1271 1.4109 35 1 4.7382 -4.8464 3.9861 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530408.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:59 Heat of formation + Delta-G solvation = -5.292869 kcal Electronic energy + Delta-G solvation = -23195.366334 eV Core-core repulsion = 19585.803419 eV Total energy + Delta-G solvation = -3609.562915 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.06411 -41.57604 -39.38692 -36.36845 -36.20900 -33.43536 -33.00487 -31.81110 -30.43056 -27.42227 -26.82545 -26.50524 -23.30478 -23.01286 -21.93829 -20.84103 -19.50980 -18.82694 -18.31500 -17.65099 -17.22832 -16.65921 -16.00512 -15.87740 -14.62305 -14.39996 -14.09954 -13.81427 -13.44528 -13.33393 -13.16952 -12.71387 -12.43676 -11.88155 -11.69113 -11.45505 -11.42189 -11.08475 -11.04825 -10.94364 -10.89797 -10.76087 -10.46672 -10.28995 -10.08832 -9.89952 -9.75105 -9.09788 -8.53963 -8.03493 -6.17188 -4.23999 0.05664 0.89170 1.40218 2.21278 2.93787 3.23199 3.31419 3.33592 3.37972 3.56888 4.33349 4.52117 4.69537 5.03685 5.17477 5.23101 5.38316 5.47751 5.50334 5.63519 5.93489 5.94253 5.98661 6.17100 6.26691 6.44448 6.48242 6.52823 6.58377 6.83692 7.12227 7.25677 7.72303 7.88536 7.92252 7.98351 8.38290 8.79012 9.42708 10.90665 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.012785 B = 0.009215 C = 0.006136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.466426 B = 3037.766233 C = 4562.421455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.135 3.865 3 C -0.155 4.155 4 N -0.568 5.568 5 C 0.229 3.771 6 C -0.544 4.544 7 H 0.058 0.942 8 C 0.077 3.923 9 N -0.874 5.874 10 Si 0.888 3.112 11 H -0.279 1.279 12 H -0.281 1.281 13 H -0.276 1.276 14 C 0.589 3.411 15 O -0.543 6.543 16 C 0.033 3.967 17 C -0.160 4.160 18 C -0.105 4.105 19 C 0.021 3.979 20 N 0.061 4.939 21 O -0.158 6.158 22 O -0.097 6.097 23 O -0.075 6.075 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.090 0.910 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.268 0.732 34 H 0.178 0.822 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.059 -6.008 -5.674 8.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.032 3.968 3 C -0.213 4.213 4 N -0.297 5.297 5 C 0.111 3.889 6 C -0.582 4.582 7 H 0.076 0.924 8 C -0.129 4.129 9 N -0.510 5.510 10 Si 0.716 3.284 11 H -0.205 1.205 12 H -0.206 1.206 13 H -0.201 1.201 14 C 0.375 3.625 15 O -0.424 6.424 16 C -0.024 4.024 17 C -0.181 4.181 18 C -0.127 4.127 19 C -0.114 4.114 20 N 0.583 4.417 21 O -0.365 6.365 22 O -0.325 6.325 23 O 0.033 5.967 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.109 0.891 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.196 0.804 35 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 1.037 -5.888 -6.657 8.948 hybrid contribution 0.756 0.660 1.099 1.488 sum 1.793 -5.229 -5.558 7.839 Atomic orbital electron populations 1.22153 0.94921 1.02031 1.02742 1.21036 0.94004 0.93814 0.87900 1.22089 1.01523 0.95274 1.02395 1.48456 1.42375 1.28371 1.10477 1.19796 0.97064 0.96285 0.75778 1.21228 1.05757 1.29196 1.02003 0.92362 1.24805 0.95453 0.96185 0.96415 1.69852 1.25465 1.42828 1.12852 0.86646 0.81854 0.81042 0.78874 1.20473 1.20633 1.20147 1.16567 0.80272 0.80866 0.84818 1.90814 1.57416 1.69889 1.24319 1.22940 1.00264 0.97108 0.82117 1.21938 1.01932 0.96890 0.97337 1.21601 0.99405 0.99608 0.92048 1.22860 1.08912 0.97066 0.82513 1.42239 0.99504 1.00349 0.99617 1.94541 1.48782 1.31300 1.61888 1.94763 1.37783 1.29497 1.70471 1.84873 1.55839 1.41169 1.14791 0.91179 0.91742 0.92766 0.89146 0.92664 0.92690 0.90356 0.93249 0.93594 0.92197 0.80434 0.80523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.10 37.16 0.34 -1.99 16 2 C 0.14 2.28 3.24 -67.93 -0.22 2.06 16 3 C -0.15 -2.53 8.92 37.16 0.33 -2.20 16 4 N -0.57 -11.30 2.38 -169.01 -0.40 -11.70 16 5 C 0.23 5.23 4.12 -5.20 -0.02 5.20 16 6 C -0.54 -13.69 7.52 -34.44 -0.26 -13.95 16 7 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 8 C 0.08 2.01 5.46 -17.82 -0.10 1.92 16 9 N -0.87 -23.79 13.29 55.43 0.74 -23.05 16 10 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 14 C 0.59 11.73 7.58 -12.86 -0.10 11.63 16 15 O -0.54 -11.08 16.22 5.20 0.08 -10.99 16 16 C 0.03 0.62 6.75 -36.79 -0.25 0.38 16 17 C -0.16 -2.41 10.63 -39.39 -0.42 -2.83 16 18 C -0.11 -1.54 10.53 -39.89 -0.42 -1.96 16 19 C 0.02 0.40 8.23 -10.73 -0.09 0.32 16 20 N 0.06 1.20 4.45 32.67 0.15 1.34 16 21 O -0.16 -2.84 19.00 -29.46 -0.56 -3.40 16 22 O -0.10 -2.17 19.25 -32.51 -0.63 -2.80 16 23 O -0.08 -1.59 6.62 -0.31 0.00 -1.59 16 24 H 0.07 1.11 6.50 -51.93 -0.34 0.77 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.09 1.50 6.93 -51.93 -0.36 1.14 16 28 H 0.05 0.96 8.14 -51.92 -0.42 0.53 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.08 1.44 7.29 -51.93 -0.38 1.06 16 31 H 0.05 1.16 6.20 -51.93 -0.32 0.84 16 32 H 0.05 1.14 5.36 -51.93 -0.28 0.86 16 33 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.18 2.16 8.06 -52.49 -0.42 1.73 16 35 H 0.18 1.92 8.06 -52.49 -0.42 1.49 16 LS Contribution 311.22 15.07 4.69 4.69 Total: -1.00 -28.32 311.22 -5.91 -34.23 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -3.76 Total: -1.23 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -1.20 Total: -1.42 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: 0.48 Total: -33.41 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -1.10 Total: -18.78 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.32 -5.91 -34.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530408.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.937 kcal (2) G-P(sol) polarization free energy of solvation -28.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds