Wall clock time and date at job start Tue Mar 31 2020 05:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86795 * 120.00241 * 2 1 4 4 H 1.48501 * 109.47233 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47013 * 299.99909 * 3 2 1 6 6 H 1.48497 * 109.47483 * 59.99573 * 3 2 1 7 7 C 1.40251 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99790 * 197.86854 * 7 2 1 9 9 C 1.41085 * 119.99724 * 17.87916 * 7 2 1 10 10 C 1.40901 * 120.09672 * 204.62901 * 9 7 2 11 11 C 1.36298 * 119.89867 * 180.02562 * 10 9 7 12 12 C 1.40064 * 120.10183 * 0.02566 * 11 10 9 13 13 C 1.47509 * 119.90241 * 179.97438 * 12 11 10 14 14 O 1.21516 * 119.99933 * 359.72126 * 13 12 11 15 15 O 1.34775 * 120.00368 * 180.02562 * 13 12 11 16 16 C 1.45195 * 117.00155 * 180.02562 * 15 13 12 17 17 C 1.50702 * 109.47217 * 179.97438 * 16 15 13 18 18 C 1.38236 * 119.99839 * 269.72685 * 17 16 15 19 19 C 1.38233 * 119.99903 * 179.76294 * 18 17 16 20 20 C 1.38237 * 120.00142 * 0.50932 * 19 18 17 21 21 C 1.38240 * 119.99996 * 359.74114 * 20 19 18 22 22 C 1.38237 * 120.00202 * 89.99462 * 17 16 15 23 23 C 1.40062 * 120.19876 * 0.24738 * 12 11 10 24 24 C 1.36301 * 120.10249 * 359.44680 * 23 12 11 25 25 H 0.97002 * 120.00122 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.05433 * 0.02562 * 10 9 7 27 27 H 1.08004 * 119.95040 * 179.97438 * 11 10 9 28 28 H 1.09002 * 109.47353 * 299.99794 * 16 15 13 29 29 H 1.08997 * 109.47246 * 59.99682 * 16 15 13 30 30 H 1.07997 * 120.00258 * 359.97438 * 18 17 16 31 31 H 1.08005 * 120.00361 * 180.22706 * 19 18 17 32 32 H 1.07998 * 120.00490 * 179.72666 * 20 19 18 33 33 H 1.07997 * 120.00417 * 179.97438 * 21 20 19 34 34 H 1.08001 * 119.99887 * 0.02562 * 22 17 16 35 35 H 1.08008 * 119.94951 * 179.70172 * 23 12 11 36 36 H 1.08003 * 120.05687 * 180.24713 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6176 0.0000 4 1 3.7003 1.3463 0.0006 5 1 1.8816 2.3964 -1.2125 6 1 1.8816 2.3965 1.2124 7 6 2.0075 -1.2146 0.0005 8 1 3.0484 -1.2371 0.2875 9 6 1.3531 -2.4071 -0.3740 10 6 1.8267 -3.6495 0.0922 11 6 1.1917 -4.7990 -0.2726 12 6 0.0703 -4.7466 -1.1101 13 6 -0.6132 -5.9935 -1.5027 14 8 -0.2001 -7.0643 -1.1036 15 8 -1.6922 -5.9455 -2.3089 16 6 -2.3144 -7.2113 -2.6534 17 6 -3.4964 -6.9613 -3.5543 18 6 -4.7512 -6.7633 -3.0091 19 6 -5.8345 -6.5291 -3.8351 20 6 -5.6650 -6.5033 -5.2068 21 6 -4.4112 -6.7065 -5.7523 22 6 -3.3269 -6.9354 -4.9260 23 6 -0.4006 -3.5144 -1.5807 24 6 0.2243 -2.3593 -1.2160 25 1 -0.4850 0.8400 -0.0004 26 1 2.6916 -3.6909 0.7377 27 1 1.5543 -5.7518 0.0840 28 1 -1.5913 -7.8432 -3.1692 29 1 -2.6500 -7.7105 -1.7445 30 1 -4.8846 -6.7881 -1.9377 31 1 -6.8143 -6.3707 -3.4091 32 1 -6.5122 -6.3247 -5.8524 33 1 -4.2787 -6.6868 -6.8239 34 1 -2.3474 -7.0948 -5.3521 35 1 -1.2629 -3.4790 -2.2302 36 1 -0.1419 -1.4091 -1.5761 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058234994.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:43 Heat of formation + Delta-G solvation = -53.963043 kcal Electronic energy + Delta-G solvation = -20120.392275 eV Core-core repulsion = 16919.568126 eV Total energy + Delta-G solvation = -3200.824149 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.80281 -38.98027 -37.42716 -35.62686 -33.95685 -32.11091 -30.98396 -30.30545 -29.51104 -26.87476 -25.65424 -22.65895 -22.45252 -21.27618 -20.94262 -19.93405 -17.57246 -17.08186 -16.86847 -16.07822 -15.92375 -15.45210 -15.02151 -14.69975 -14.06149 -13.58614 -13.49580 -13.37059 -12.91852 -12.85563 -12.57046 -12.33091 -12.11167 -11.82437 -11.42382 -11.32750 -11.15077 -11.12207 -10.98936 -10.70549 -10.15746 -10.13010 -9.63833 -9.49604 -9.38836 -8.99616 -8.87376 -7.76138 -7.64678 -7.10593 -4.68473 1.15751 1.32776 2.05012 2.84728 2.92147 2.97751 3.02539 3.33456 3.62745 3.70185 3.94941 4.45894 4.73662 4.76121 4.91554 5.03785 5.25301 5.38040 5.50900 5.53005 5.59048 5.86727 5.96319 6.02914 6.20746 6.25993 6.34911 6.40376 6.53817 6.73531 6.79400 6.89147 6.98287 7.03253 7.11502 7.40971 7.66641 7.77742 7.83362 7.99878 8.34822 8.55763 8.68818 8.74302 9.80639 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.021728 B = 0.003465 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.362743 B = 8078.608698 C = 8996.069716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.073 3.927 3 Si 0.915 3.085 4 H -0.256 1.256 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.434 4.434 8 H 0.088 0.912 9 C 0.131 3.869 10 C -0.240 4.240 11 C -0.018 4.018 12 C -0.275 4.275 13 C 0.514 3.486 14 O -0.554 6.554 15 O -0.354 6.354 16 C 0.107 3.893 17 C -0.088 4.088 18 C -0.096 4.096 19 C -0.124 4.124 20 C -0.116 4.116 21 C -0.125 4.125 22 C -0.096 4.096 23 C -0.042 4.042 24 C -0.185 4.185 25 H 0.288 0.712 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.101 0.899 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.216 -5.816 -7.474 12.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.150 4.150 3 Si 0.738 3.262 4 H -0.180 1.180 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.461 4.461 8 H 0.106 0.894 9 C 0.128 3.872 10 C -0.259 4.259 11 C -0.036 4.036 12 C -0.277 4.277 13 C 0.367 3.633 14 O -0.448 6.448 15 O -0.272 6.272 16 C 0.033 3.967 17 C -0.088 4.088 18 C -0.114 4.114 19 C -0.142 4.142 20 C -0.134 4.134 21 C -0.143 4.143 22 C -0.115 4.115 23 C -0.061 4.061 24 C -0.204 4.204 25 H 0.100 0.900 26 H 0.119 0.881 27 H 0.121 0.879 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.119 0.881 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.335 -5.978 -7.357 12.623 hybrid contribution 0.195 0.616 0.067 0.649 sum -8.140 -5.363 -7.290 12.172 Atomic orbital electron populations 1.69747 1.08013 1.30262 1.30546 1.26163 0.94844 1.02097 0.91871 0.86133 0.81097 0.79971 0.78971 1.17962 1.19256 1.19568 1.19959 0.98490 0.91157 1.36526 0.89429 1.17852 0.90284 0.92194 0.86872 1.20685 1.04709 0.92453 1.08051 1.20347 0.92501 0.97399 0.93377 1.18214 1.04454 0.89254 1.15806 1.21614 0.76976 0.90233 0.74506 1.90695 1.66040 1.32125 1.55918 1.86676 1.43251 1.33987 1.63289 1.21606 0.92186 0.85144 0.97732 1.19641 0.93919 1.01436 0.93817 1.21126 0.92175 0.97973 1.00145 1.21143 0.98801 1.00577 0.93714 1.21190 0.97335 0.99657 0.95241 1.21139 0.92818 1.00526 0.99790 1.21119 0.99096 0.98408 0.92831 1.20651 0.97096 0.91927 0.96418 1.21010 1.00074 0.97056 1.02271 0.90034 0.88053 0.87947 0.90911 0.90918 0.85758 0.85882 0.86078 0.85900 0.85783 0.88056 0.86059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.15 10.95 55.56 0.61 -17.54 16 2 C 0.07 1.67 5.13 -17.31 -0.09 1.58 16 3 Si 0.92 16.94 29.60 -169.99 -5.03 11.91 16 4 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 5 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 6 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 7 C -0.43 -10.64 9.04 -37.75 -0.34 -10.99 16 8 H 0.09 2.03 7.91 -52.49 -0.42 1.62 16 9 C 0.13 3.33 5.58 -106.80 -0.60 2.74 16 10 C -0.24 -5.75 9.73 -39.27 -0.38 -6.13 16 11 C -0.02 -0.42 9.52 -39.60 -0.38 -0.79 16 12 C -0.27 -6.54 5.89 -104.75 -0.62 -7.16 16 13 C 0.51 11.54 7.89 34.51 0.27 11.81 16 14 O -0.55 -13.05 16.11 -19.28 -0.31 -13.36 16 15 O -0.35 -7.02 9.43 -40.70 -0.38 -7.41 16 16 C 0.11 1.70 5.60 36.01 0.20 1.90 16 17 C -0.09 -1.22 5.52 -104.62 -0.58 -1.80 16 18 C -0.10 -1.21 9.70 -39.58 -0.38 -1.59 16 19 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 20 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 21 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 22 C -0.10 -1.20 9.70 -39.58 -0.38 -1.58 16 23 C -0.04 -1.00 9.55 -39.60 -0.38 -1.37 16 24 C -0.18 -4.63 8.63 -39.27 -0.34 -4.96 16 25 H 0.29 6.12 8.29 -40.82 -0.34 5.78 16 26 H 0.10 2.23 8.06 -52.48 -0.42 1.81 16 27 H 0.10 2.28 7.63 -52.48 -0.40 1.88 16 28 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 29 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 30 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 32 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 33 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.10 2.23 7.59 -52.48 -0.40 1.83 16 36 H 0.12 3.06 6.16 -52.48 -0.32 2.74 16 LS Contribution 321.13 15.07 4.84 4.84 Total: -1.00 -28.05 321.13 -9.51 -37.55 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -4.05 Total: 7.38 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -5.18 Total: -23.38 kcal Atomic # 7 Polarization: -18.15 SS G_CDS: 0.61 Total: -17.54 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.69 Total: -20.77 kcal Atomic # 14 Polarization: 16.94 SS G_CDS: -5.03 Total: 11.91 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.05 -9.51 -37.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058234994.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.409 kcal (2) G-P(sol) polarization free energy of solvation -28.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds