Wall clock time and date at job start Tue Mar 31 2020 05:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86794 * 119.99973 * 2 1 4 4 H 1.48503 * 109.47178 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47097 * 299.99302 * 3 2 1 6 6 H 1.48502 * 109.47583 * 59.99876 * 3 2 1 7 7 C 1.39934 * 119.99681 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00114 * 197.86007 * 7 2 1 9 9 C 1.41436 * 120.00211 * 17.86118 * 7 2 1 10 10 C 1.40795 * 120.17475 * 204.36660 * 9 7 2 11 11 C 1.37719 * 120.04908 * 179.97438 * 10 9 7 12 12 C 1.38353 * 120.41958 * 0.04529 * 11 10 9 13 13 C 1.39924 * 120.35413 * 359.97438 * 12 11 10 14 14 C 1.47768 * 120.03227 * 180.02562 * 13 12 11 15 15 O 1.21464 * 120.00128 * 179.97438 * 14 13 12 16 16 O 1.34704 * 120.00116 * 359.97438 * 14 13 12 17 17 C 1.45201 * 117.00270 * 180.02562 * 16 14 13 18 18 C 1.50698 * 109.47160 * 179.97438 * 17 16 14 19 19 C 1.38231 * 120.00415 * 269.72563 * 18 17 16 20 20 C 1.38231 * 120.00503 * 179.76388 * 19 18 17 21 21 C 1.38235 * 119.99906 * 0.48687 * 20 19 18 22 22 C 1.38238 * 119.99975 * 359.78759 * 21 20 19 23 23 C 1.38237 * 119.99942 * 89.99538 * 18 17 16 24 24 C 1.39093 * 119.93722 * 359.97438 * 13 12 11 25 25 H 0.96996 * 119.99900 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.97670 * 0.04212 * 10 9 7 27 27 H 1.07998 * 119.78600 * 180.02562 * 11 10 9 28 28 H 1.08000 * 119.82356 * 180.02562 * 12 11 10 29 29 H 1.09002 * 109.46958 * 299.99666 * 17 16 14 30 30 H 1.08996 * 109.47082 * 60.00129 * 17 16 14 31 31 H 1.08005 * 119.99966 * 0.02562 * 19 18 17 32 32 H 1.08000 * 120.00691 * 180.25361 * 20 19 18 33 33 H 1.08003 * 120.00452 * 179.76329 * 21 20 19 34 34 H 1.07993 * 120.00205 * 179.97438 * 22 21 20 35 35 H 1.08001 * 120.00016 * 0.02562 * 23 18 17 36 36 H 1.08004 * 120.19890 * 179.72209 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3963 -1.2126 6 1 1.8835 2.3965 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0489 -1.2344 0.2874 9 6 1.3518 -2.4074 -0.3746 10 6 1.8272 -3.6501 0.0860 11 6 1.1860 -4.8125 -0.2805 12 6 0.0738 -4.7699 -1.1022 13 6 -0.4131 -3.5445 -1.5702 14 6 -1.6019 -3.5072 -2.4470 15 8 -2.0244 -2.4431 -2.8526 16 8 -2.2172 -4.6534 -2.7966 17 6 -3.3787 -4.5412 -3.6607 18 6 -3.9293 -5.9152 -3.9431 19 6 -3.4787 -6.6290 -5.0378 20 6 -3.9802 -7.8914 -5.2941 21 6 -4.9398 -8.4360 -4.4614 22 6 -5.3947 -7.7200 -3.3699 23 6 -4.8893 -6.4597 -3.1106 24 6 0.2224 -2.3613 -1.2084 25 1 -0.4850 0.8400 -0.0004 26 1 2.6946 -3.6916 0.7281 27 1 1.5541 -5.7634 0.0756 28 1 -0.4218 -5.6874 -1.3832 29 1 -4.1412 -3.9380 -3.1680 30 1 -3.0894 -4.0664 -4.5983 31 1 -2.7315 -6.2021 -5.6905 32 1 -3.6251 -8.4507 -6.1470 33 1 -5.3345 -9.4207 -4.6637 34 1 -6.1447 -8.1452 -2.7195 35 1 -5.2449 -5.9001 -2.2581 36 1 -0.1471 -1.4133 -1.5709 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058234996.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:45 Heat of formation + Delta-G solvation = -49.051403 kcal Electronic energy + Delta-G solvation = -20282.411543 eV Core-core repulsion = 17081.800379 eV Total energy + Delta-G solvation = -3200.611164 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.94986 -39.07161 -37.36233 -35.75709 -33.77118 -32.17564 -31.02789 -30.29749 -29.51433 -26.59254 -25.33238 -23.08496 -22.70362 -21.32645 -20.98562 -19.81144 -17.86216 -17.09867 -16.39671 -16.03125 -15.97410 -15.27890 -14.85926 -14.78726 -14.57403 -13.59924 -13.54004 -13.38161 -12.98112 -12.85872 -12.66074 -12.59297 -12.06167 -11.69412 -11.24008 -11.19060 -11.17047 -11.11425 -10.77282 -10.52568 -10.25837 -10.20662 -9.73492 -9.55312 -9.25925 -9.04024 -8.92807 -7.75706 -7.57042 -6.84408 -4.45005 1.10380 1.28383 1.96858 2.76141 3.05997 3.10424 3.12330 3.20351 3.58758 3.85541 3.89277 4.56283 4.66758 4.71666 4.87107 4.99383 5.20251 5.32305 5.45950 5.52271 5.54916 5.74185 5.85371 5.91942 6.12256 6.30303 6.36100 6.40359 6.48948 6.62153 6.84467 6.91780 6.93884 6.97989 7.15642 7.29830 7.67355 7.74416 7.89701 8.08922 8.43097 8.54345 8.75607 8.77716 10.10929 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.030799 B = 0.003447 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.906127 B = 8121.138047 C = 8657.410252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.459 4.459 8 H 0.083 0.917 9 C 0.095 3.905 10 C -0.201 4.201 11 C -0.104 4.104 12 C -0.193 4.193 13 C -0.115 4.115 14 C 0.511 3.489 15 O -0.518 6.518 16 O -0.350 6.350 17 C 0.105 3.895 18 C -0.088 4.088 19 C -0.096 4.096 20 C -0.125 4.125 21 C -0.115 4.115 22 C -0.124 4.124 23 C -0.096 4.096 24 C -0.090 4.090 25 H 0.284 0.716 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.735 -10.638 -6.845 14.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.488 4.488 8 H 0.101 0.899 9 C 0.093 3.907 10 C -0.221 4.221 11 C -0.122 4.122 12 C -0.213 4.213 13 C -0.116 4.116 14 C 0.359 3.641 15 O -0.408 6.408 16 O -0.268 6.268 17 C 0.031 3.969 18 C -0.089 4.089 19 C -0.114 4.114 20 C -0.143 4.143 21 C -0.134 4.134 22 C -0.142 4.142 23 C -0.114 4.114 24 C -0.109 4.109 25 H 0.095 0.905 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.121 0.879 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.098 -10.157 -6.969 14.741 hybrid contribution 0.141 0.797 0.001 0.809 sum -7.957 -9.360 -6.967 14.123 Atomic orbital electron populations 1.69789 1.07615 1.29716 1.33964 1.25970 0.94777 1.01621 0.92243 0.86219 0.80894 0.80731 0.78691 1.18303 1.19558 1.19901 1.19599 0.98288 0.90917 1.40028 0.89900 1.17545 0.91126 0.92619 0.89452 1.21190 1.03161 0.92712 1.05032 1.20509 0.96127 0.96928 0.98635 1.20573 1.00131 0.95339 1.05254 1.18835 0.94864 0.95903 1.02000 1.21916 0.83082 0.80882 0.78254 1.90761 1.65208 1.31217 1.53593 1.86675 1.41490 1.36141 1.62480 1.21688 0.86978 0.93713 0.94524 1.19610 0.97431 0.95740 0.96073 1.21124 0.98730 0.94492 0.97061 1.21139 0.97620 0.95553 0.99954 1.21198 0.97261 0.99734 0.95160 1.21146 1.00468 0.94761 0.97871 1.21140 0.96270 0.95573 0.98385 1.21651 0.96533 0.95986 0.96728 0.90468 0.88329 0.88535 0.87881 0.90590 0.90644 0.85740 0.85868 0.86052 0.85856 0.85705 0.84681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.57 10.95 55.55 0.61 -19.96 16 2 C 0.07 1.81 5.14 -17.34 -0.09 1.73 16 3 Si 0.91 18.54 29.59 -169.99 -5.03 13.51 16 4 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 5 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 7 C -0.46 -11.92 9.05 -37.73 -0.34 -12.26 16 8 H 0.08 2.04 7.91 -52.48 -0.41 1.63 16 9 C 0.10 2.49 5.57 -106.88 -0.60 1.90 16 10 C -0.20 -4.75 9.78 -38.80 -0.38 -5.13 16 11 C -0.10 -2.25 10.01 -39.73 -0.40 -2.65 16 12 C -0.19 -4.32 9.62 -38.91 -0.37 -4.69 16 13 C -0.11 -2.79 5.87 -105.05 -0.62 -3.41 16 14 C 0.51 11.62 7.90 34.63 0.27 11.90 16 15 O -0.52 -12.71 16.12 -19.24 -0.31 -13.02 16 16 O -0.35 -6.77 9.44 -40.50 -0.38 -7.15 16 17 C 0.10 1.63 5.60 36.00 0.20 1.83 16 18 C -0.09 -1.18 5.52 -104.63 -0.58 -1.76 16 19 C -0.10 -1.14 9.70 -39.59 -0.38 -1.53 16 20 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 21 C -0.12 -1.11 10.05 -39.58 -0.40 -1.50 16 22 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 23 C -0.10 -1.15 9.70 -39.58 -0.38 -1.54 16 24 C -0.09 -2.38 8.23 -38.43 -0.32 -2.69 16 25 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 26 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 27 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 28 H 0.10 2.10 7.59 -52.49 -0.40 1.70 16 29 H 0.08 1.14 8.08 -51.93 -0.42 0.72 16 30 H 0.08 1.11 8.08 -51.93 -0.42 0.69 16 31 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 32 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 34 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.14 3.83 5.74 -52.48 -0.30 3.53 16 LS Contribution 321.36 15.07 4.84 4.84 Total: -1.00 -29.16 321.36 -9.49 -38.66 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -4.05 Total: 6.27 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -5.17 Total: -23.14 kcal Atomic # 7 Polarization: -20.57 SS G_CDS: 0.61 Total: -19.96 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.69 Total: -20.17 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.16 -9.49 -38.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058234996.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.394 kcal (2) G-P(sol) polarization free energy of solvation -29.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds