Wall clock time and date at job start Tue Mar 31 2020 05:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30618 * 1 3 3 Si 1.86800 * 120.00205 * 2 1 4 4 H 1.48496 * 109.47409 * 87.47008 * 3 2 1 5 5 H 1.48501 * 109.47064 * 207.47229 * 3 2 1 6 6 H 1.48507 * 109.47023 * 327.46848 * 3 2 1 7 7 C 1.40298 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99623 * 10.86662 * 7 2 1 9 9 C 1.40864 * 120.00223 * 190.87325 * 7 2 1 10 10 C 1.40709 * 120.33081 * 35.84475 * 9 7 2 11 11 C 1.37593 * 119.88255 * 179.97438 * 10 9 7 12 12 C 1.38835 * 120.58819 * 0.02562 * 11 10 9 13 13 C 1.38203 * 120.67877 * 359.97438 * 12 11 10 14 14 C 1.39287 * 120.08857 * 359.73771 * 13 12 11 15 15 C 1.47286 * 120.29060 * 180.27521 * 14 13 12 16 16 O 1.21528 * 120.00034 * 176.63270 * 15 14 13 17 17 O 1.34805 * 119.99931 * 356.63819 * 15 14 13 18 18 C 1.45201 * 117.00112 * 180.02562 * 17 15 14 19 19 C 1.50693 * 109.47442 * 179.97438 * 18 17 15 20 20 C 1.38237 * 119.99478 * 269.72557 * 19 18 17 21 21 C 1.38238 * 119.99696 * 179.76476 * 20 19 18 22 22 C 1.38241 * 119.99835 * 0.50342 * 21 20 19 23 23 C 1.38230 * 120.00041 * 359.74529 * 22 21 20 24 24 C 1.38232 * 120.00418 * 89.99415 * 19 18 17 25 25 H 0.97002 * 119.99756 * 0.02562 * 1 2 3 26 26 H 1.07994 * 120.05630 * 359.96350 * 10 9 7 27 27 H 1.08005 * 119.70403 * 179.97438 * 11 10 9 28 28 H 1.08001 * 119.65923 * 179.97438 * 12 11 10 29 29 H 1.08002 * 119.95173 * 179.97438 * 13 12 11 30 30 H 1.09003 * 109.46814 * 299.99745 * 18 17 15 31 31 H 1.08997 * 109.47587 * 59.99212 * 18 17 15 32 32 H 1.07994 * 120.00512 * 359.97438 * 20 19 18 33 33 H 1.08000 * 120.00380 * 180.22882 * 21 20 19 34 34 H 1.08006 * 119.99685 * 179.72635 * 22 21 20 35 35 H 1.08006 * 120.00040 * 179.97438 * 23 22 21 36 36 H 1.08003 * 119.99845 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 2.4343 2.0773 1.3986 5 1 3.5635 1.4252 -0.6459 6 1 1.4655 2.6366 -0.7529 7 6 2.0076 -1.2150 0.0005 8 1 1.4821 -2.1420 -0.1754 9 6 3.3973 -1.2260 0.2307 10 6 3.9745 -0.3181 1.1376 11 6 5.3329 -0.3373 1.3558 12 6 6.1430 -1.2456 0.6878 13 6 5.6012 -2.1478 -0.2080 14 6 4.2288 -2.1572 -0.4458 15 6 3.6460 -3.1208 -1.3951 16 8 2.4418 -3.1657 -1.5529 17 8 4.4482 -3.9530 -2.0887 18 6 3.8048 -4.8758 -3.0068 19 6 4.8519 -5.7189 -3.6876 20 6 5.4127 -5.2962 -4.8784 21 6 6.3767 -6.0673 -5.5005 22 6 6.7725 -7.2661 -4.9371 23 6 6.2080 -7.6912 -3.7491 24 6 5.2477 -6.9177 -3.1244 25 1 -0.4850 0.8401 -0.0004 26 1 3.3525 0.3925 1.6614 27 1 5.7730 0.3611 2.0523 28 1 7.2075 -1.2472 0.8701 29 1 6.2424 -2.8490 -0.7215 30 1 3.1214 -5.5207 -2.4543 31 1 3.2478 -4.3136 -3.7563 32 1 5.1001 -4.3620 -5.3209 33 1 6.8175 -5.7353 -6.4288 34 1 7.5225 -7.8706 -5.4255 35 1 6.5170 -8.6280 -3.3092 36 1 4.8062 -7.2502 -2.1965 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058248809.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:48 Heat of formation + Delta-G solvation = -42.004051 kcal Electronic energy + Delta-G solvation = -20693.898250 eV Core-core repulsion = 17493.592683 eV Total energy + Delta-G solvation = -3200.305568 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.70749 -38.95457 -37.46849 -35.40195 -33.72839 -32.05948 -30.95645 -30.57268 -30.17062 -26.50308 -25.36354 -22.71655 -22.62627 -21.53913 -21.06787 -19.68608 -17.62488 -16.98336 -16.85651 -15.90431 -15.80499 -15.39672 -14.93296 -14.60574 -14.14057 -13.75577 -13.71663 -13.46628 -12.94092 -12.79465 -12.71264 -12.46451 -12.05540 -11.91987 -11.51268 -11.10040 -11.07530 -10.98644 -10.76807 -10.50824 -10.32285 -9.97886 -9.84968 -9.33190 -9.04827 -8.97230 -8.72589 -7.89052 -7.69267 -7.02147 -4.61550 1.19453 1.35165 1.95514 2.57715 3.03247 3.11618 3.23614 3.40577 3.73247 3.88582 4.00515 4.48297 4.79681 4.80203 4.94114 5.06994 5.27903 5.34413 5.42895 5.64141 5.65385 5.88429 5.91069 5.96713 5.99827 6.07947 6.36426 6.37801 6.42454 6.52025 6.58970 6.71104 6.92121 7.03341 7.10096 7.30213 7.37135 7.59855 7.69950 7.95922 8.34593 8.51443 8.72788 9.01198 9.94437 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.024155 B = 0.004262 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.903213 B = 6568.862631 C = 7181.443153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.079 3.921 3 Si 0.908 3.092 4 H -0.266 1.266 5 H -0.241 1.241 6 H -0.287 1.287 7 C -0.402 4.402 8 H 0.124 0.876 9 C 0.118 3.882 10 C -0.227 4.227 11 C -0.059 4.059 12 C -0.257 4.257 13 C -0.019 4.019 14 C -0.240 4.240 15 C 0.501 3.499 16 O -0.506 6.506 17 O -0.364 6.364 18 C 0.108 3.892 19 C -0.085 4.085 20 C -0.097 4.097 21 C -0.125 4.125 22 C -0.118 4.118 23 C -0.125 4.125 24 C -0.097 4.097 25 H 0.289 0.711 26 H 0.107 0.893 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.108 0.892 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.940 -8.029 -6.527 14.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.164 1.164 6 H -0.214 1.214 7 C -0.428 4.428 8 H 0.141 0.859 9 C 0.114 3.886 10 C -0.246 4.246 11 C -0.078 4.078 12 C -0.276 4.276 13 C -0.037 4.037 14 C -0.242 4.242 15 C 0.351 3.649 16 O -0.396 6.396 17 O -0.283 6.283 18 C 0.033 3.967 19 C -0.085 4.085 20 C -0.115 4.115 21 C -0.143 4.143 22 C -0.136 4.136 23 C -0.143 4.143 24 C -0.115 4.115 25 H 0.100 0.900 26 H 0.125 0.875 27 H 0.117 0.883 28 H 0.118 0.882 29 H 0.126 0.874 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 9.261 -7.979 -6.612 13.898 hybrid contribution 0.133 0.718 -0.018 0.730 sum 9.394 -7.261 -6.630 13.599 Atomic orbital electron populations 1.69560 1.08284 1.30658 1.32391 1.26417 0.94908 1.01837 0.91084 0.86362 0.81376 0.79464 0.79404 1.19187 1.16400 1.21412 1.20255 0.90945 0.96739 1.34861 0.85869 1.17499 0.93000 0.89384 0.88746 1.21106 0.94825 1.04882 1.03742 1.20801 0.93664 0.96403 0.96899 1.20368 0.98141 1.02974 1.06145 1.20973 0.93569 0.95151 0.94038 1.18647 0.93141 1.06159 1.06282 1.21315 0.85018 0.79317 0.79279 1.90784 1.15517 1.68137 1.65134 1.86638 1.41696 1.47142 1.52829 1.21568 0.92616 0.90580 0.91889 1.19677 0.98415 0.95085 0.95292 1.21139 0.95950 0.99374 0.95051 1.21136 0.97817 0.95125 1.00220 1.21173 0.99781 0.96579 0.96069 1.21131 0.97271 0.99975 0.95939 1.21131 0.96846 0.94227 0.99331 0.90007 0.87498 0.88324 0.88232 0.87402 0.90909 0.90869 0.85754 0.85966 0.86160 0.85967 0.85767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.88 13.92 55.57 0.77 -20.11 16 2 C 0.08 2.07 5.47 -17.29 -0.09 1.98 16 3 Si 0.91 20.32 24.51 -169.99 -4.17 16.15 16 4 H -0.27 -5.63 6.74 56.52 0.38 -5.25 16 5 H -0.24 -5.54 6.75 56.52 0.38 -5.16 16 6 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.40 -11.13 8.32 -37.81 -0.31 -11.44 16 8 H 0.12 3.75 5.95 -52.49 -0.31 3.44 16 9 C 0.12 3.04 5.04 -106.53 -0.54 2.50 16 10 C -0.23 -5.31 7.02 -38.88 -0.27 -5.58 16 11 C -0.06 -1.22 10.01 -39.60 -0.40 -1.62 16 12 C -0.26 -5.17 10.03 -39.37 -0.39 -5.56 16 13 C -0.02 -0.40 9.60 -39.20 -0.38 -0.78 16 14 C -0.24 -5.82 5.92 -104.39 -0.62 -6.43 16 15 C 0.50 11.91 7.85 34.41 0.27 12.18 16 16 O -0.51 -13.30 13.32 -19.29 -0.26 -13.56 16 17 O -0.36 -7.34 9.46 -40.78 -0.39 -7.73 16 18 C 0.11 1.80 5.60 36.00 0.20 2.00 16 19 C -0.08 -1.20 5.52 -104.63 -0.58 -1.77 16 20 C -0.10 -1.23 9.70 -39.58 -0.38 -1.62 16 21 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 22 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 23 C -0.13 -1.34 10.05 -39.59 -0.40 -1.74 16 24 C -0.10 -1.23 9.70 -39.58 -0.38 -1.61 16 25 H 0.29 6.86 8.29 -40.82 -0.34 6.52 16 26 H 0.11 2.44 4.95 -52.49 -0.26 2.18 16 27 H 0.10 1.72 8.06 -52.48 -0.42 1.30 16 28 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 29 H 0.11 2.07 7.61 -52.49 -0.40 1.67 16 30 H 0.07 1.18 8.08 -51.93 -0.42 0.76 16 31 H 0.07 1.21 8.08 -51.93 -0.42 0.79 16 32 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 33 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 35 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 36 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 LS Contribution 311.10 15.07 4.69 4.69 Total: -1.00 -29.56 311.10 -8.36 -37.93 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -3.95 Total: 5.47 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -5.07 Total: -22.83 kcal Atomic # 7 Polarization: -20.88 SS G_CDS: 0.77 Total: -20.11 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.64 Total: -21.29 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.17 Total: 16.15 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.56 -8.36 -37.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058248809.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.078 kcal (2) G-P(sol) polarization free energy of solvation -29.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds