Wall clock time and date at job start Tue Mar 31 2020 05:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00107 * 2 1 4 4 H 1.48501 * 109.47162 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47106 * 300.00016 * 3 2 1 6 6 H 1.48504 * 109.47457 * 59.99876 * 3 2 1 7 7 C 1.37878 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00259 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99558 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46901 * 180.02562 * 9 7 2 11 11 S 1.81398 * 109.46968 * 180.02562 * 10 9 7 12 12 O 1.42096 * 108.57961 * 65.51220 * 11 10 9 13 13 O 1.42104 * 108.57866 * 294.48285 * 11 10 9 14 14 C 1.81408 * 101.91950 * 180.02562 * 11 10 9 15 15 C 1.52997 * 109.46973 * 180.02562 * 14 11 10 16 16 C 1.52995 * 109.47085 * 179.97438 * 15 14 11 17 17 C 1.50707 * 109.47301 * 179.97438 * 16 15 14 18 18 C 1.38238 * 119.99792 * 90.00016 * 17 16 15 19 19 C 1.38235 * 119.99712 * 179.97438 * 18 17 16 20 20 C 1.38234 * 120.00220 * 359.97124 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38234 * 120.00179 * 269.97953 * 17 16 15 23 23 H 0.96999 * 119.99684 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.47025 * 60.00176 * 9 7 2 25 25 H 1.08996 * 109.46917 * 299.99785 * 9 7 2 26 26 H 1.09001 * 109.47253 * 59.99580 * 10 9 7 27 27 H 1.08999 * 109.46831 * 300.00049 * 10 9 7 28 28 H 1.08992 * 109.47499 * 59.99992 * 14 11 10 29 29 H 1.08999 * 109.46513 * 299.99662 * 14 11 10 30 30 H 1.08995 * 109.47671 * 59.99598 * 15 14 11 31 31 H 1.09004 * 109.46984 * 299.99614 * 15 14 11 32 32 H 1.09005 * 109.47610 * 59.99944 * 16 15 14 33 33 H 1.09000 * 109.47256 * 299.99285 * 16 15 14 34 34 H 1.08005 * 120.00068 * 359.97438 * 18 17 16 35 35 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 36 36 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 37 37 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 38 38 H 1.07999 * 119.99968 * 359.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 16 1.3382 -5.2330 0.0011 12 8 0.6297 -5.3461 -1.2255 13 8 0.6270 -5.3458 1.2262 14 6 2.6880 -6.4450 0.0035 15 6 2.1037 -7.8590 0.0026 16 6 3.2420 -8.8812 0.0040 17 6 2.6665 -10.2740 0.0037 18 6 2.4039 -10.9131 -1.1937 19 6 1.8765 -12.1909 -1.1940 20 6 1.6123 -12.8299 0.0030 21 6 1.8699 -12.1888 1.2003 22 6 2.4016 -10.9128 1.2006 23 1 -0.4849 0.8401 -0.0004 24 1 0.6247 -2.5570 -0.8896 25 1 0.6240 -2.5566 0.8903 26 1 2.8712 -3.6039 0.8922 27 1 2.8725 -3.6047 -0.8877 28 1 3.3003 -6.3051 0.8943 29 1 3.3028 -6.3057 -0.8856 30 1 1.4916 -7.9987 -0.8884 31 1 1.4884 -7.9985 0.8915 32 1 3.8545 -8.7418 0.8949 33 1 3.8568 -8.7416 -0.8852 34 1 2.6107 -10.4140 -2.1289 35 1 1.6709 -12.6899 -2.1294 36 1 1.2006 -13.8283 0.0027 37 1 1.6594 -12.6863 2.1355 38 1 2.6075 -10.4138 2.1361 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058263386.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:56 Heat of formation + Delta-G solvation = -72.944366 kcal Electronic energy + Delta-G solvation = -18901.100159 eV Core-core repulsion = 15834.896869 eV Total energy + Delta-G solvation = -3066.203289 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.54019 -36.43601 -35.62924 -35.31144 -33.86463 -31.45791 -31.15875 -31.11377 -27.05095 -25.59035 -22.89004 -22.80423 -21.40087 -20.91788 -18.38238 -17.18429 -16.79692 -16.17473 -15.90081 -15.43694 -15.37448 -15.09640 -14.50802 -14.49448 -13.80796 -13.62661 -13.40250 -13.33186 -12.58300 -12.44084 -12.40700 -12.06835 -11.72271 -11.55000 -11.47358 -11.34937 -11.22240 -11.08582 -10.92730 -10.92439 -10.45002 -10.35621 -10.26941 -9.65584 -9.14956 -9.13081 -8.89013 -8.49086 -6.10964 -4.16630 0.45679 1.12334 1.17238 3.25822 3.29305 3.33118 3.36209 3.54113 4.02194 4.35793 4.36443 4.45789 4.58697 4.76664 4.83161 4.85008 4.95283 5.00659 5.12152 5.24203 5.28127 5.37695 5.47690 5.54804 5.63896 5.71736 5.74717 5.80866 5.86434 5.95464 6.23538 6.28418 6.41085 6.50704 6.77864 7.36254 7.41882 7.82102 8.19074 8.87328 9.47901 11.00034 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.051760 B = 0.002739 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.829286 B =10220.437276 C =10275.888020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.521 4.521 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.573 4.573 11 S 2.399 3.601 12 O -0.946 6.946 13 O -0.946 6.946 14 C -0.625 4.625 15 C -0.105 4.105 16 C -0.074 4.074 17 C -0.083 4.083 18 C -0.117 4.117 19 C -0.119 4.119 20 C -0.127 4.127 21 C -0.119 4.119 22 C -0.117 4.117 23 H 0.264 0.736 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.119 0.881 27 H 0.119 0.881 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.763 -22.672 0.011 23.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.706 4.706 11 S 2.584 3.416 12 O -0.943 6.943 13 O -0.943 6.943 14 C -0.751 4.751 15 C -0.143 4.143 16 C -0.113 4.113 17 C -0.083 4.083 18 C -0.135 4.135 19 C -0.137 4.137 20 C -0.145 4.145 21 C -0.137 4.137 22 C -0.135 4.135 23 H 0.074 0.926 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.138 0.862 27 H 0.138 0.862 28 H 0.148 0.852 29 H 0.148 0.852 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.692 -22.760 0.009 23.723 hybrid contribution 1.356 1.009 0.000 1.690 sum 8.048 -21.751 0.010 23.192 Atomic orbital electron populations 1.69972 1.06108 1.27045 1.49642 1.25076 0.94975 0.99535 0.94969 0.86419 0.79897 0.83220 0.77761 1.19671 1.20807 1.20801 1.21065 0.93078 0.89821 1.52049 0.92020 1.18986 0.92733 0.90208 0.99172 1.30209 1.13345 1.17129 1.09901 1.08657 0.78543 0.79018 0.75356 1.93539 1.69290 1.85940 1.45549 1.93539 1.69188 1.85940 1.45656 1.30483 1.20572 1.12874 1.11185 1.21276 0.98319 0.90548 1.04178 1.20604 0.97165 0.89974 1.03511 1.19952 0.99047 0.95986 0.93332 1.21119 0.99527 0.95135 0.97735 1.21161 0.99211 0.95204 0.98133 1.21156 1.00628 1.00026 0.92685 1.21161 0.99199 0.95214 0.98131 1.21118 0.99498 0.95162 0.97738 0.92596 0.94645 0.94651 0.86232 0.86244 0.85209 0.85219 0.90142 0.90137 0.90477 0.90473 0.85903 0.86082 0.86229 0.86081 0.85905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 10 C -0.57 -10.54 5.74 37.16 0.21 -10.33 16 11 S 2.40 40.31 4.72 -107.50 -0.51 39.80 16 12 O -0.95 -19.11 18.10 -57.83 -1.05 -20.15 16 13 O -0.95 -19.11 18.10 -57.83 -1.05 -20.16 16 14 C -0.62 -6.83 5.81 37.16 0.22 -6.62 16 15 C -0.10 -1.17 5.20 -26.74 -0.14 -1.31 16 16 C -0.07 -0.67 5.34 -27.88 -0.15 -0.82 16 17 C -0.08 -0.82 5.13 -104.62 -0.54 -1.36 16 18 C -0.12 -1.11 9.70 -39.58 -0.38 -1.49 16 19 C -0.12 -1.04 10.05 -39.58 -0.40 -1.43 16 20 C -0.13 -1.07 10.05 -39.58 -0.40 -1.47 16 21 C -0.12 -1.04 10.05 -39.58 -0.40 -1.43 16 22 C -0.12 -1.11 9.70 -39.58 -0.38 -1.49 16 23 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.12 1.91 8.14 -51.92 -0.42 1.49 16 27 H 0.12 1.91 8.14 -51.92 -0.42 1.49 16 28 H 0.13 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.13 1.11 8.14 -51.92 -0.42 0.69 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 33 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 34 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 35 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 36 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 38 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 339.02 15.07 5.11 5.11 Total: -1.00 -35.82 339.02 -10.56 -46.38 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -5.88 Total: -0.86 kcal Atomic # 6 Polarization: -37.48 SS G_CDS: -2.91 Total: -40.38 kcal Atomic # 7 Polarization: -26.67 SS G_CDS: 0.74 Total: -25.93 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: -2.09 Total: -40.31 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 40.31 SS G_CDS: -0.51 Total: 39.80 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.82 -10.56 -46.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058263386.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.567 kcal (2) G-P(sol) polarization free energy of solvation -35.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds