Wall clock time and date at job start Tue Mar 31 2020 05:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00107 * 2 1 4 4 H 1.48501 * 109.47162 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47106 * 300.00016 * 3 2 1 6 6 H 1.48504 * 109.47457 * 59.99876 * 3 2 1 7 7 C 1.37878 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00259 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99558 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46901 * 180.02562 * 9 7 2 11 11 S 1.81398 * 109.46968 * 180.02562 * 10 9 7 12 12 O 1.42096 * 108.57961 * 65.51220 * 11 10 9 13 13 O 1.42104 * 108.57866 * 294.48285 * 11 10 9 14 14 C 1.81408 * 101.91950 * 180.02562 * 11 10 9 15 15 C 1.52997 * 109.46973 * 180.02562 * 14 11 10 16 16 C 1.52995 * 109.47085 * 179.97438 * 15 14 11 17 17 C 1.50707 * 109.47301 * 179.97438 * 16 15 14 18 18 C 1.38238 * 119.99792 * 90.00016 * 17 16 15 19 19 C 1.38235 * 119.99712 * 179.97438 * 18 17 16 20 20 C 1.38234 * 120.00220 * 359.97124 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38234 * 120.00179 * 269.97953 * 17 16 15 23 23 H 0.96999 * 119.99684 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.47025 * 60.00176 * 9 7 2 25 25 H 1.08996 * 109.46917 * 299.99785 * 9 7 2 26 26 H 1.09001 * 109.47253 * 59.99580 * 10 9 7 27 27 H 1.08999 * 109.46831 * 300.00049 * 10 9 7 28 28 H 1.08992 * 109.47499 * 59.99992 * 14 11 10 29 29 H 1.08999 * 109.46513 * 299.99662 * 14 11 10 30 30 H 1.08995 * 109.47671 * 59.99598 * 15 14 11 31 31 H 1.09004 * 109.46984 * 299.99614 * 15 14 11 32 32 H 1.09005 * 109.47610 * 59.99944 * 16 15 14 33 33 H 1.09000 * 109.47256 * 299.99285 * 16 15 14 34 34 H 1.08005 * 120.00068 * 359.97438 * 18 17 16 35 35 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 36 36 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 37 37 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 38 38 H 1.07999 * 119.99968 * 359.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 16 1.3382 -5.2330 0.0011 12 8 0.6297 -5.3461 -1.2255 13 8 0.6270 -5.3458 1.2262 14 6 2.6880 -6.4450 0.0035 15 6 2.1037 -7.8590 0.0026 16 6 3.2420 -8.8812 0.0040 17 6 2.6665 -10.2740 0.0037 18 6 2.4039 -10.9131 -1.1937 19 6 1.8765 -12.1909 -1.1940 20 6 1.6123 -12.8299 0.0030 21 6 1.8699 -12.1888 1.2003 22 6 2.4016 -10.9128 1.2006 23 1 -0.4849 0.8401 -0.0004 24 1 0.6247 -2.5570 -0.8896 25 1 0.6240 -2.5566 0.8903 26 1 2.8712 -3.6039 0.8922 27 1 2.8725 -3.6047 -0.8877 28 1 3.3003 -6.3051 0.8943 29 1 3.3028 -6.3057 -0.8856 30 1 1.4916 -7.9987 -0.8884 31 1 1.4884 -7.9985 0.8915 32 1 3.8545 -8.7418 0.8949 33 1 3.8568 -8.7416 -0.8852 34 1 2.6107 -10.4140 -2.1289 35 1 1.6709 -12.6899 -2.1294 36 1 1.2006 -13.8283 0.0027 37 1 1.6594 -12.6863 2.1355 38 1 2.6075 -10.4138 2.1361 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058263386.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:56 Heat of formation + Delta-G solvation = -96.678024 kcal Electronic energy + Delta-G solvation = -18902.129327 eV Core-core repulsion = 15834.896869 eV Total energy + Delta-G solvation = -3067.232458 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.16997 -37.91050 -36.99427 -36.20954 -35.84216 -33.09913 -32.20810 -31.73689 -28.01236 -27.36612 -24.06367 -23.43629 -22.88053 -21.69656 -19.76675 -18.83744 -17.78583 -17.28782 -17.19863 -16.78561 -16.43553 -16.37380 -15.89610 -15.41197 -15.02539 -14.63011 -14.41119 -14.22745 -14.06506 -13.70350 -13.22045 -13.21848 -13.03703 -12.96448 -12.91998 -12.85677 -12.72094 -12.20664 -12.04273 -12.02482 -11.92578 -11.77587 -11.62090 -11.43463 -10.84389 -10.65365 -9.79475 -9.57557 -8.25472 -6.39937 -0.86368 0.46934 0.52663 1.40662 1.41786 1.55073 2.00339 2.38081 2.76759 2.92399 3.07784 3.17589 3.56377 3.82912 4.05099 4.10743 4.11949 4.20762 4.21274 4.24740 4.34022 4.44273 4.64081 4.69727 4.70596 4.81025 4.84819 5.00698 5.13464 5.22116 5.25540 5.32597 5.32787 5.60492 5.65539 5.70161 5.75233 6.07181 6.16271 6.75589 7.30453 8.87257 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.051760 B = 0.002739 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.829286 B =10220.437276 C =10275.888020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.009 4.009 3 Si 0.977 3.023 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.538 4.538 8 H 0.079 0.921 9 C 0.018 3.982 10 C -0.578 4.578 11 S 2.396 3.604 12 O -0.992 6.992 13 O -0.992 6.992 14 C -0.579 4.579 15 C -0.116 4.116 16 C -0.068 4.068 17 C -0.099 4.099 18 C -0.133 4.133 19 C -0.130 4.130 20 C -0.135 4.135 21 C -0.130 4.130 22 C -0.133 4.133 23 H 0.266 0.734 24 H 0.001 0.999 25 H 0.001 0.999 26 H 0.147 0.853 27 H 0.147 0.853 28 H 0.169 0.831 29 H 0.169 0.831 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.959 -23.761 0.013 26.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.800 3.200 4 H -0.176 1.176 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.577 4.577 8 H 0.098 0.902 9 C -0.020 4.020 10 C -0.709 4.709 11 S 2.587 3.413 12 O -0.989 6.989 13 O -0.989 6.989 14 C -0.712 4.712 15 C -0.155 4.155 16 C -0.106 4.106 17 C -0.100 4.100 18 C -0.150 4.150 19 C -0.148 4.148 20 C -0.153 4.153 21 C -0.148 4.148 22 C -0.150 4.150 23 H 0.075 0.925 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.166 0.834 27 H 0.165 0.835 28 H 0.187 0.813 29 H 0.187 0.813 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.151 0.849 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.155 0.845 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 9.854 -23.789 0.012 25.749 hybrid contribution 0.366 1.165 0.000 1.221 sum 10.220 -22.624 0.011 24.826 Atomic orbital electron populations 1.70134 1.08244 1.28198 1.51161 1.26193 0.95869 1.04136 0.94490 0.85225 0.79241 0.77810 0.77712 1.17604 1.20467 1.20456 1.21624 0.94122 0.90821 1.51110 0.90248 1.18817 0.93799 0.93405 0.95986 1.30115 1.12274 1.15828 1.12663 1.08350 0.79910 0.79504 0.73568 1.93478 1.72005 1.86573 1.46846 1.93478 1.71911 1.86574 1.46948 1.30103 1.16893 1.08972 1.15206 1.21417 0.99353 0.91055 1.03651 1.20590 0.96289 0.88535 1.05188 1.20142 0.99643 0.96595 0.93576 1.21382 0.99787 0.95654 0.98226 1.21465 0.98985 0.95281 0.99089 1.21476 1.00319 1.00944 0.92595 1.21466 0.98977 0.95291 0.99087 1.21381 0.99757 0.95680 0.98230 0.92486 0.98057 0.98062 0.83450 0.83462 0.81313 0.81318 0.90941 0.90942 0.88801 0.88794 0.84929 0.84474 0.84385 0.84474 0.84930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.34 13.29 21.45 0.28 -58.06 16 2 C -0.01 -0.52 5.46 84.65 0.46 -0.06 16 3 Si 0.98 43.58 29.54 68.60 2.03 45.60 16 4 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 6 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.54 -30.03 9.11 25.60 0.23 -29.79 16 8 H 0.08 4.02 7.74 -2.91 -0.02 4.00 16 9 C 0.02 0.96 4.98 29.85 0.15 1.11 16 10 C -0.58 -20.76 5.74 71.98 0.41 -20.34 16 11 S 2.40 79.83 4.72 -56.49 -0.27 79.57 16 12 O -0.99 -41.16 18.10 -127.37 -2.31 -43.46 16 13 O -0.99 -41.17 18.10 -127.37 -2.30 -43.47 16 14 C -0.58 -10.30 5.81 71.98 0.42 -9.89 16 15 C -0.12 -2.27 5.20 30.59 0.16 -2.11 16 16 C -0.07 -0.99 5.34 29.85 0.16 -0.83 16 17 C -0.10 -1.75 5.13 -19.86 -0.10 -1.85 16 18 C -0.13 -2.28 9.70 22.27 0.22 -2.06 16 19 C -0.13 -2.07 10.05 22.27 0.22 -1.85 16 20 C -0.14 -2.07 10.05 22.27 0.22 -1.85 16 21 C -0.13 -2.07 10.05 22.27 0.22 -1.85 16 22 C -0.13 -2.28 9.70 22.27 0.22 -2.06 16 23 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 24 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 25 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 26 H 0.15 4.37 8.14 -2.39 -0.02 4.35 16 27 H 0.15 4.37 8.14 -2.39 -0.02 4.35 16 28 H 0.17 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.17 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 1.54 8.14 -2.38 -0.02 1.53 16 32 H 0.09 1.07 8.09 -2.38 -0.02 1.05 16 33 H 0.09 1.07 8.09 -2.39 -0.02 1.05 16 34 H 0.13 1.89 8.06 -2.91 -0.02 1.86 16 35 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 36 H 0.14 1.48 8.06 -2.91 -0.02 1.45 16 37 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 38 H 0.13 1.89 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -82.66 339.02 1.45 -81.21 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 1.02 Total: 12.04 kcal Atomic # 6 Polarization: -76.42 SS G_CDS: 3.00 Total: -73.42 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: 0.28 Total: -58.06 kcal Atomic # 8 Polarization: -82.33 SS G_CDS: -4.61 Total: -86.94 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 79.83 SS G_CDS: -0.27 Total: 79.57 kcal Total: -82.66 1.45 -81.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058263386.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.467 kcal (2) G-P(sol) polarization free energy of solvation -82.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds