Wall clock time and date at job start Tue Mar 31 2020 05:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86803 * 119.99938 * 2 1 4 4 H 1.48504 * 109.46903 * 239.99916 * 3 2 1 5 5 H 1.48495 * 109.47059 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46970 * 119.99951 * 3 2 1 7 7 C 1.38755 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99589 * 179.97438 * 7 2 1 9 9 O 1.34920 * 120.00133 * 0.02562 * 7 2 1 10 10 C 1.34311 * 117.00083 * 179.97438 * 9 7 2 11 11 O 1.21215 * 119.99537 * 0.02562 * 10 9 7 12 12 C 1.50693 * 119.99876 * 179.97438 * 10 9 7 13 13 C 1.50699 * 109.47135 * 60.00285 * 12 10 9 14 14 C 1.38244 * 119.99856 * 51.01723 * 13 12 10 15 15 C 1.38238 * 119.99760 * 179.76940 * 14 13 12 16 16 C 1.38231 * 119.99797 * 0.50575 * 15 14 13 17 17 C 1.38231 * 120.00352 * 359.74490 * 16 15 14 18 18 C 1.38235 * 120.00217 * 0.02562 * 17 16 15 19 19 C 1.50699 * 109.46978 * 179.97438 * 12 10 9 20 20 C 1.38234 * 120.00286 * 306.32560 * 19 12 10 21 21 C 1.38236 * 120.00253 * 179.76559 * 20 19 12 22 22 C 1.38239 * 119.99849 * 0.50725 * 21 20 19 23 23 C 1.38240 * 119.99875 * 359.74887 * 22 21 20 24 24 C 1.38234 * 119.99914 * 359.97438 * 23 22 21 25 25 H 0.97003 * 120.00280 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47738 * 300.00259 * 12 10 9 27 27 H 1.07993 * 119.99886 * 359.97438 * 14 13 12 28 28 H 1.08001 * 119.99220 * 180.22427 * 15 14 13 29 29 H 1.08003 * 119.99364 * 179.72900 * 16 15 14 30 30 H 1.08004 * 120.00269 * 179.97438 * 17 16 15 31 31 H 1.07997 * 120.00143 * 179.97438 * 18 17 16 32 32 H 1.08004 * 119.99862 * 0.02562 * 20 19 12 33 33 H 1.08000 * 120.00129 * 180.23343 * 21 20 19 34 34 H 1.08000 * 119.99954 * 179.72622 * 22 21 20 35 35 H 1.08001 * 119.99928 * 179.97438 * 23 22 21 36 36 H 1.08004 * 119.99702 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.1022 1.6964 -1.2125 5 1 1.2834 2.7464 0.0006 6 1 3.1021 1.6964 1.2125 7 6 2.0082 -1.2017 0.0005 8 1 3.0881 -1.2016 0.0001 9 8 1.3336 -2.3701 0.0005 10 6 2.0651 -3.4965 0.0005 11 8 3.2756 -3.4330 0.0010 12 6 1.3809 -4.8392 0.0011 13 6 0.5195 -4.9646 -1.2290 14 6 1.0528 -4.6985 -2.4764 15 6 0.2639 -4.8181 -3.6052 16 6 -1.0611 -5.1937 -3.4858 17 6 -1.5958 -5.4547 -2.2381 18 6 -0.8057 -5.3397 -1.1096 19 6 2.4188 -5.9318 0.0004 20 6 3.4083 -5.9446 -0.9649 21 6 4.3632 -6.9442 -0.9627 22 6 4.3224 -7.9368 -0.0014 23 6 3.3298 -7.9270 0.9607 24 6 2.3783 -6.9243 0.9618 25 1 -0.4851 0.8400 -0.0004 26 1 0.7584 -4.9295 0.8913 27 1 2.0866 -4.4004 -2.5692 28 1 0.6816 -4.6138 -4.5800 29 1 -1.6785 -5.2828 -4.3674 30 1 -2.6311 -5.7477 -2.1447 31 1 -1.2235 -5.5432 -0.1348 32 1 3.4377 -5.1713 -1.7183 33 1 5.1384 -6.9520 -1.7145 34 1 5.0659 -8.7202 -0.0024 35 1 3.2977 -8.7028 1.7114 36 1 1.6026 -6.9168 1.7133 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060572321.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:54 Heat of formation + Delta-G solvation = -45.258073 kcal Electronic energy + Delta-G solvation = -21395.079357 eV Core-core repulsion = 18194.632684 eV Total energy + Delta-G solvation = -3200.446673 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.73058 -40.11645 -39.53236 -37.27515 -34.92078 -34.27402 -32.03733 -31.65510 -31.12971 -28.69845 -27.11332 -24.07211 -23.25886 -23.11753 -22.92549 -21.11887 -19.87771 -18.62228 -17.79937 -17.71655 -16.89030 -16.71378 -16.32907 -16.00730 -15.84412 -15.50451 -15.32685 -14.62860 -14.46451 -14.19541 -14.00913 -13.75301 -13.52542 -13.38546 -13.32642 -13.03635 -12.45311 -12.39042 -12.20319 -12.08067 -11.95539 -11.88847 -11.64884 -11.08557 -10.71082 -9.83966 -9.78015 -9.76019 -9.50974 -8.54768 -6.34734 0.28252 0.48955 0.53049 0.56119 1.28211 1.30843 1.46661 1.60615 2.08569 2.61270 2.88433 2.94170 3.02470 3.71564 3.75839 3.82410 4.03525 4.09157 4.21385 4.22672 4.33201 4.33262 4.60626 4.63832 4.67846 4.73169 4.78603 5.00818 5.07414 5.12599 5.17459 5.19166 5.52902 5.56401 5.59044 5.61659 5.62735 5.74151 5.81061 6.10225 6.13925 6.62347 6.89451 7.75589 8.65322 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.014180 B = 0.006296 C = 0.004919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.150823 B = 4446.235502 C = 5690.878044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.001 4.001 3 Si 1.014 2.986 4 H -0.263 1.263 5 H -0.258 1.258 6 H -0.262 1.262 7 C -0.422 4.422 8 H 0.079 0.921 9 O -0.235 6.235 10 C 0.406 3.594 11 O -0.570 6.570 12 C 0.011 3.989 13 C -0.080 4.080 14 C -0.130 4.130 15 C -0.127 4.127 16 C -0.121 4.121 17 C -0.118 4.118 18 C -0.116 4.116 19 C -0.081 4.081 20 C -0.102 4.102 21 C -0.135 4.135 22 C -0.118 4.118 23 C -0.123 4.123 24 C -0.118 4.118 25 H 0.278 0.722 26 H 0.122 0.878 27 H 0.096 0.904 28 H 0.138 0.862 29 H 0.154 0.846 30 H 0.156 0.844 31 H 0.141 0.859 32 H 0.096 0.904 33 H 0.136 0.864 34 H 0.154 0.846 35 H 0.156 0.844 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.611 -15.062 -3.094 15.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.202 4.202 3 Si 0.832 3.168 4 H -0.188 1.188 5 H -0.181 1.181 6 H -0.186 1.186 7 C -0.497 4.497 8 H 0.097 0.903 9 O -0.143 6.143 10 C 0.253 3.747 11 O -0.467 6.467 12 C -0.008 4.008 13 C -0.080 4.080 14 C -0.148 4.148 15 C -0.145 4.145 16 C -0.139 4.139 17 C -0.136 4.136 18 C -0.134 4.134 19 C -0.082 4.082 20 C -0.120 4.120 21 C -0.153 4.153 22 C -0.136 4.136 23 C -0.140 4.140 24 C -0.136 4.136 25 H 0.088 0.912 26 H 0.139 0.861 27 H 0.115 0.885 28 H 0.156 0.844 29 H 0.172 0.828 30 H 0.174 0.826 31 H 0.159 0.841 32 H 0.114 0.886 33 H 0.154 0.846 34 H 0.171 0.829 35 H 0.174 0.826 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.501 -14.885 -3.092 15.211 hybrid contribution 0.626 1.271 0.010 1.416 sum 0.125 -13.614 -3.082 13.959 Atomic orbital electron populations 1.70079 1.07568 1.29341 1.46604 1.26489 0.96855 1.02154 0.94678 0.84749 0.77699 0.74576 0.79729 1.18757 1.18134 1.18614 1.21356 0.92031 0.81255 1.55102 0.90345 1.83916 1.40021 1.13922 1.76452 1.23828 0.86536 0.87707 0.76616 1.90530 1.16681 1.88290 1.51196 1.18767 0.95488 0.86904 0.99600 1.19409 0.95020 1.00982 0.92634 1.21107 0.99691 1.00531 0.93508 1.21350 0.95073 0.99855 0.98232 1.21520 0.94841 0.98637 0.98856 1.21493 1.00825 0.99354 0.91929 1.21290 0.92029 0.99419 1.00635 1.19307 0.96016 0.95397 0.97435 1.21047 0.95071 0.97731 0.98134 1.21361 0.98625 0.94855 1.00426 1.21520 0.99050 0.98634 0.94367 1.21449 0.94359 0.98712 0.99520 1.21277 1.00406 0.94298 0.97633 0.91221 0.86063 0.88543 0.84395 0.82812 0.82618 0.84111 0.88640 0.84614 0.82875 0.82589 0.84103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.21 13.67 21.62 0.30 -53.92 16 2 C 0.00 -0.07 5.49 84.87 0.47 0.40 16 3 Si 1.01 44.55 29.55 68.60 2.03 46.58 16 4 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 5 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 6 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 7 C -0.42 -26.40 9.65 67.94 0.66 -25.74 16 8 H 0.08 4.99 6.86 -2.91 -0.02 4.97 16 9 O -0.24 -14.40 9.66 14.87 0.14 -14.26 16 10 C 0.41 21.55 6.23 71.23 0.44 21.99 16 11 O -0.57 -32.50 13.85 20.76 0.29 -32.21 16 12 C 0.01 0.47 2.70 -13.03 -0.04 0.43 16 13 C -0.08 -3.06 4.70 -19.86 -0.09 -3.16 16 14 C -0.13 -5.03 8.33 22.27 0.19 -4.84 16 15 C -0.13 -4.02 10.05 22.27 0.22 -3.79 16 16 C -0.12 -3.22 10.05 22.27 0.22 -3.00 16 17 C -0.12 -3.17 10.05 22.27 0.22 -2.95 16 18 C -0.12 -3.68 9.67 22.27 0.22 -3.47 16 19 C -0.08 -2.96 4.47 -19.87 -0.09 -3.05 16 20 C -0.10 -3.75 7.47 22.27 0.17 -3.58 16 21 C -0.13 -3.95 10.05 22.27 0.22 -3.72 16 22 C -0.12 -2.81 10.05 22.27 0.22 -2.58 16 23 C -0.12 -2.90 10.05 22.27 0.22 -2.67 16 24 C -0.12 -3.42 9.67 22.27 0.22 -3.20 16 25 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 26 H 0.12 4.43 7.65 -2.39 -0.02 4.41 16 27 H 0.10 4.05 5.72 -2.91 -0.02 4.04 16 28 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 29 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 30 H 0.16 3.00 8.06 -2.91 -0.02 2.97 16 31 H 0.14 3.77 7.97 -2.91 -0.02 3.75 16 32 H 0.10 3.93 5.34 -2.91 -0.02 3.92 16 33 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 34 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 35 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 36 H 0.14 3.35 7.96 -2.91 -0.02 3.33 16 Total: -1.00 -77.91 314.88 7.32 -70.59 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: 1.09 Total: 26.14 kcal Atomic # 6 Polarization: -46.40 SS G_CDS: 3.47 Total: -42.93 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: 0.30 Total: -53.92 kcal Atomic # 8 Polarization: -46.89 SS G_CDS: 0.43 Total: -46.46 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -77.91 7.32 -70.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060572321.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.329 kcal (2) G-P(sol) polarization free energy of solvation -77.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds