Wall clock time and date at job start Tue Mar 31 2020 05:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46802 * 2 1 4 4 C 1.50700 * 109.47165 * 119.99955 * 2 1 3 5 5 C 1.37413 * 123.35806 * 294.66056 * 4 2 1 6 6 C 1.33853 * 115.11128 * 179.97438 * 5 4 2 7 7 S 1.70613 * 110.96465 * 0.02562 * 6 5 4 8 8 C 1.36748 * 123.35374 * 114.66484 * 4 2 1 9 9 C 1.46395 * 125.46460 * 359.97438 * 8 4 2 10 10 O 1.21631 * 119.99981 * 5.63187 * 9 8 4 11 11 O 1.34894 * 119.99691 * 185.62867 * 9 8 4 12 12 C 1.45207 * 116.99833 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47175 * 179.97438 * 12 11 9 14 14 C 1.53003 * 109.46638 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.46582 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00252 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99868 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00090 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00100 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46952 * 60.00230 * 19 17 15 21 21 H 1.48499 * 109.46821 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47021 * 300.00371 * 19 17 15 23 23 H 1.08996 * 109.46689 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47119 * 299.99778 * 1 2 3 25 25 H 1.08999 * 109.47158 * 60.00294 * 1 2 3 26 26 H 1.08997 * 109.47119 * 240.00222 * 2 1 3 27 27 H 1.09004 * 109.47101 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47313 * 300.00222 * 3 2 1 29 29 H 1.09005 * 109.47301 * 59.99944 * 3 2 1 30 30 H 1.08000 * 122.44067 * 359.97438 * 5 4 2 31 31 H 1.08003 * 124.51674 * 180.02562 * 6 5 4 32 32 H 1.08997 * 109.47238 * 300.00546 * 12 11 9 33 33 H 1.09007 * 109.46906 * 60.00090 * 12 11 9 34 34 H 1.08991 * 109.47411 * 300.00039 * 13 12 11 35 35 H 1.09002 * 109.46884 * 60.00717 * 13 12 11 36 36 H 1.08999 * 109.46938 * 299.99709 * 14 13 12 37 37 H 1.08994 * 109.47226 * 60.00391 * 14 13 12 38 38 H 0.96995 * 120.00153 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.8328 -0.2431 2.5072 6 6 2.3494 -1.0056 3.4784 7 16 3.1294 -2.3767 2.8284 8 6 2.7324 -1.8843 1.1877 9 6 3.0927 -2.6146 -0.0288 10 8 2.8559 -2.1326 -1.1201 11 8 3.6874 -3.8221 0.0606 12 6 4.0159 -4.4891 -1.1867 13 6 4.6793 -5.8346 -0.8862 14 6 5.0260 -6.5370 -2.2005 15 6 5.6789 -7.8626 -1.9045 16 1 5.8309 -8.1732 -0.8814 17 6 6.0811 -8.6794 -2.9399 18 7 5.8955 -8.3015 -4.1859 19 14 6.8911 -10.3223 -2.5731 20 1 5.9576 -11.1703 -1.7892 21 1 7.2274 -11.0041 -3.8487 22 1 8.1326 -10.0981 -1.7898 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.2980 0.6726 2.7119 31 1 2.2815 -0.7826 4.5330 32 1 3.1047 -4.6532 -1.7619 33 1 4.7015 -3.8667 -1.7619 34 1 5.5905 -5.6701 -0.3113 35 1 3.9940 -6.4571 -0.3109 36 1 4.1149 -6.7016 -2.7758 37 1 5.7113 -5.9144 -2.7755 38 1 6.1788 -8.8759 -4.9143 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064014722.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:09 Heat of formation + Delta-G solvation = -81.112490 kcal Electronic energy + Delta-G solvation = -19178.969903 eV Core-core repulsion = 16112.412417 eV Total energy + Delta-G solvation = -3066.557486 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.34931 -38.78296 -36.30099 -34.27408 -33.96624 -31.75337 -30.15694 -27.28494 -27.15703 -25.21773 -23.33756 -22.11424 -21.51385 -20.38384 -18.77076 -18.08785 -16.67996 -16.32742 -16.23999 -16.08883 -14.90712 -14.47442 -14.33074 -14.29079 -13.75471 -13.62992 -13.14313 -12.85340 -12.73077 -12.30256 -12.19815 -12.09212 -11.87400 -11.63265 -11.29764 -11.28559 -10.95428 -10.84008 -10.63908 -10.63202 -10.39784 -9.98310 -9.72851 -9.50013 -9.17709 -9.07791 -8.64782 -8.38220 -6.03148 -4.06308 0.24587 1.30458 1.74480 2.09643 2.82877 2.91527 3.32806 3.37073 3.39713 4.43658 4.53565 4.68712 4.84609 5.00733 5.05702 5.13136 5.32708 5.40786 5.46251 5.47615 5.57543 5.61520 5.66249 5.76205 5.88239 5.92720 6.00372 6.08940 6.10303 6.25241 6.53738 6.60308 6.84964 6.98295 7.60155 7.71347 7.86928 7.95048 8.36022 8.99682 9.57911 11.08279 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.029828 B = 0.003075 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.493402 B = 9104.827880 C = 9837.917396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.072 4.072 3 C -0.138 4.138 4 C -0.005 4.005 5 C -0.149 4.149 6 C -0.236 4.236 7 S 0.249 5.751 8 C -0.262 4.262 9 C 0.536 3.464 10 O -0.498 6.498 11 O -0.355 6.355 12 C 0.070 3.930 13 C -0.109 4.109 14 C 0.025 3.975 15 C -0.522 4.522 16 H 0.057 0.943 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.120 0.880 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.144 0.856 31 H 0.170 0.830 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.449 18.620 14.653 25.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.092 4.092 3 C -0.196 4.196 4 C -0.021 4.021 5 C -0.180 4.180 6 C -0.374 4.374 7 S 0.520 5.480 8 C -0.381 4.381 9 C 0.381 3.619 10 O -0.389 6.389 11 O -0.271 6.271 12 C -0.002 4.002 13 C -0.147 4.147 14 C -0.013 4.013 15 C -0.561 4.561 16 H 0.075 0.925 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.138 0.862 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.162 0.838 31 H 0.187 0.813 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.664 17.389 14.810 24.429 hybrid contribution -0.353 0.371 -0.459 0.688 sum -9.018 17.760 14.351 24.550 Atomic orbital electron populations 1.21769 0.94047 1.02000 1.01702 1.20459 0.96028 0.96164 0.96514 1.21786 1.01262 0.94816 1.01704 1.19498 0.94334 0.91999 0.96244 1.19781 1.04809 1.02643 0.90771 1.25487 1.05646 1.01539 1.04751 1.83449 1.49706 1.20065 0.94824 1.23518 1.15153 1.02744 0.96650 1.19601 0.74800 0.80065 0.87473 1.90750 1.51762 1.67809 1.28588 1.86592 1.70681 1.30583 1.39281 1.23555 1.00403 0.94327 0.81955 1.21779 0.99417 0.91309 1.02175 1.19046 0.97027 0.94885 0.90294 1.21135 1.39413 1.02691 0.92825 0.92467 1.25027 0.95960 0.98394 0.95050 1.69954 1.47337 1.37642 0.98435 0.86604 0.79899 0.83704 0.77493 1.20170 1.21256 1.20173 0.92627 0.92838 0.92036 0.86220 0.92590 0.92072 0.92838 0.83845 0.81293 0.91295 0.91303 0.92092 0.92088 0.96200 0.96193 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.09 37.16 0.34 -0.95 16 2 C -0.07 -0.80 3.07 -91.77 -0.28 -1.08 16 3 C -0.14 -1.25 8.99 37.16 0.33 -0.91 16 4 C -0.01 -0.06 4.72 -105.46 -0.50 -0.56 16 5 C -0.15 -1.36 9.18 -41.42 -0.38 -1.74 16 6 C -0.24 -1.97 10.92 29.19 0.32 -1.66 16 7 S 0.25 2.63 22.93 -107.50 -2.47 0.17 16 8 C -0.26 -3.54 6.45 -36.84 -0.24 -3.78 16 9 C 0.54 8.86 7.91 34.01 0.27 9.13 16 10 O -0.50 -9.02 13.79 -19.37 -0.27 -9.28 16 11 O -0.35 -6.20 10.08 -41.02 -0.41 -6.62 16 12 C 0.07 1.32 5.48 37.16 0.20 1.52 16 13 C -0.11 -2.29 5.53 -26.73 -0.15 -2.43 16 14 C 0.02 0.63 4.97 -27.88 -0.14 0.50 16 15 C -0.52 -14.76 9.11 -34.44 -0.31 -15.08 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 19 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.42 8.00 -51.93 -0.42 0.00 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.12 1.67 4.96 -51.93 -0.26 1.41 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.40 7.50 -51.93 -0.39 0.01 16 30 H 0.14 1.00 7.67 -52.49 -0.40 0.60 16 31 H 0.17 0.92 8.06 -52.48 -0.42 0.49 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.07 1.29 8.14 -51.92 -0.42 0.86 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 335.48 15.07 5.06 5.06 Total: -1.00 -30.99 335.48 -8.66 -39.65 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -5.66 Total: -3.90 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -0.63 Total: -15.50 kcal Atomic # 7 Polarization: -26.89 SS G_CDS: 0.74 Total: -26.15 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.68 Total: -15.90 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -2.47 Total: 0.17 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.99 -8.66 -39.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064014722.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.459 kcal (2) G-P(sol) polarization free energy of solvation -30.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds