Wall clock time and date at job start Tue Mar 31 2020 05:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46802 * 2 1 4 4 C 1.50700 * 109.47165 * 119.99955 * 2 1 3 5 5 C 1.37413 * 123.35806 * 294.66056 * 4 2 1 6 6 C 1.33853 * 115.11128 * 179.97438 * 5 4 2 7 7 S 1.70613 * 110.96465 * 0.02562 * 6 5 4 8 8 C 1.36748 * 123.35374 * 114.66484 * 4 2 1 9 9 C 1.46395 * 125.46460 * 359.97438 * 8 4 2 10 10 O 1.21631 * 119.99981 * 5.63187 * 9 8 4 11 11 O 1.34894 * 119.99691 * 185.62867 * 9 8 4 12 12 C 1.45207 * 116.99833 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47175 * 179.97438 * 12 11 9 14 14 C 1.53003 * 109.46638 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.46582 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00252 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99868 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00090 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00100 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46952 * 60.00230 * 19 17 15 21 21 H 1.48499 * 109.46821 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47021 * 300.00371 * 19 17 15 23 23 H 1.08996 * 109.46689 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47119 * 299.99778 * 1 2 3 25 25 H 1.08999 * 109.47158 * 60.00294 * 1 2 3 26 26 H 1.08997 * 109.47119 * 240.00222 * 2 1 3 27 27 H 1.09004 * 109.47101 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47313 * 300.00222 * 3 2 1 29 29 H 1.09005 * 109.47301 * 59.99944 * 3 2 1 30 30 H 1.08000 * 122.44067 * 359.97438 * 5 4 2 31 31 H 1.08003 * 124.51674 * 180.02562 * 6 5 4 32 32 H 1.08997 * 109.47238 * 300.00546 * 12 11 9 33 33 H 1.09007 * 109.46906 * 60.00090 * 12 11 9 34 34 H 1.08991 * 109.47411 * 300.00039 * 13 12 11 35 35 H 1.09002 * 109.46884 * 60.00717 * 13 12 11 36 36 H 1.08999 * 109.46938 * 299.99709 * 14 13 12 37 37 H 1.08994 * 109.47226 * 60.00391 * 14 13 12 38 38 H 0.96995 * 120.00153 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.8328 -0.2431 2.5072 6 6 2.3494 -1.0056 3.4784 7 16 3.1294 -2.3767 2.8284 8 6 2.7324 -1.8843 1.1877 9 6 3.0927 -2.6146 -0.0288 10 8 2.8559 -2.1326 -1.1201 11 8 3.6874 -3.8221 0.0606 12 6 4.0159 -4.4891 -1.1867 13 6 4.6793 -5.8346 -0.8862 14 6 5.0260 -6.5370 -2.2005 15 6 5.6789 -7.8626 -1.9045 16 1 5.8309 -8.1732 -0.8814 17 6 6.0811 -8.6794 -2.9399 18 7 5.8955 -8.3015 -4.1859 19 14 6.8911 -10.3223 -2.5731 20 1 5.9576 -11.1703 -1.7892 21 1 7.2274 -11.0041 -3.8487 22 1 8.1326 -10.0981 -1.7898 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.2980 0.6726 2.7119 31 1 2.2815 -0.7826 4.5330 32 1 3.1047 -4.6532 -1.7619 33 1 4.7015 -3.8667 -1.7619 34 1 5.5905 -5.6701 -0.3113 35 1 3.9940 -6.4571 -0.3109 36 1 4.1149 -6.7016 -2.7758 37 1 5.7113 -5.9144 -2.7755 38 1 6.1788 -8.8759 -4.9143 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064014722.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:09 Heat of formation + Delta-G solvation = -96.937955 kcal Electronic energy + Delta-G solvation = -19179.656147 eV Core-core repulsion = 16112.412417 eV Total energy + Delta-G solvation = -3067.243729 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.58711 -39.74001 -37.68265 -35.95902 -35.02404 -33.72508 -31.15391 -28.98345 -28.00555 -26.34367 -25.00580 -23.12250 -22.51853 -22.20674 -19.90144 -19.16156 -18.49674 -17.73865 -17.53071 -17.10595 -16.50128 -15.94123 -15.77801 -15.13224 -14.66649 -14.63513 -14.45345 -14.08526 -13.85710 -13.84106 -13.52931 -13.42288 -12.95393 -12.81118 -12.56473 -12.46825 -12.38803 -12.24277 -12.11705 -12.07277 -11.63484 -11.59048 -11.46262 -11.30448 -10.97420 -10.57550 -9.93421 -9.44701 -8.22334 -6.34238 -0.65279 0.46087 0.96662 1.19434 1.40812 1.44564 1.51400 1.55723 1.83913 2.41093 3.11394 3.63461 3.79256 3.95707 3.96059 4.01687 4.23451 4.27779 4.36354 4.37584 4.62888 4.73135 4.76255 4.80127 4.83899 4.95932 5.00938 5.03828 5.13135 5.17934 5.27457 5.33646 5.36658 5.46558 5.61503 5.69568 5.78590 6.17774 6.57125 6.81193 7.35270 8.89776 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.029828 B = 0.003075 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.493402 B = 9104.827880 C = 9837.917396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.079 4.079 3 C -0.133 4.133 4 C 0.006 3.994 5 C -0.158 4.158 6 C -0.204 4.204 7 S 0.248 5.752 8 C -0.312 4.312 9 C 0.532 3.468 10 O -0.526 6.526 11 O -0.357 6.357 12 C 0.080 3.920 13 C -0.093 4.093 14 C 0.027 3.973 15 C -0.545 4.545 16 H 0.065 0.935 17 C -0.001 4.001 18 N -0.934 5.934 19 Si 0.969 3.031 20 H -0.265 1.265 21 H -0.283 1.283 22 H -0.265 1.265 23 H 0.038 0.962 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.043 0.957 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.175 0.825 31 H 0.209 0.791 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.067 0.933 36 H -0.003 1.003 37 H -0.003 1.003 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.965 19.559 17.590 28.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.099 4.099 3 C -0.190 4.190 4 C -0.011 4.011 5 C -0.188 4.188 6 C -0.342 4.342 7 S 0.518 5.482 8 C -0.429 4.429 9 C 0.378 3.622 10 O -0.419 6.419 11 O -0.274 6.274 12 C 0.007 3.993 13 C -0.131 4.131 14 C -0.010 4.010 15 C -0.583 4.583 16 H 0.084 0.916 17 C -0.199 4.199 18 N -0.574 5.574 19 Si 0.793 3.207 20 H -0.190 1.190 21 H -0.209 1.209 22 H -0.190 1.190 23 H 0.058 0.942 24 H 0.095 0.905 25 H 0.087 0.913 26 H 0.103 0.897 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.192 0.808 31 H 0.226 0.774 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.015 0.985 37 H 0.016 0.984 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.184 18.338 17.770 27.136 hybrid contribution -0.251 0.192 -1.316 1.354 sum -9.435 18.530 16.453 26.516 Atomic orbital electron populations 1.21744 0.92604 1.01437 1.03267 1.20463 0.97237 0.97077 0.95111 1.21759 1.00485 0.93516 1.03289 1.19826 0.92677 0.90986 0.97622 1.20017 1.05456 1.03931 0.89402 1.25956 1.02521 0.99261 1.06431 1.83434 1.50198 1.21472 0.93083 1.23448 1.18542 1.04179 0.96762 1.20178 0.73984 0.79412 0.88578 1.90744 1.52982 1.68188 1.29942 1.86564 1.71270 1.31518 1.38009 1.23184 0.99939 0.93550 0.82614 1.21468 1.00025 0.92051 0.99534 1.18923 0.95294 0.94641 0.92157 1.21591 1.39621 1.03696 0.93390 0.91640 1.26019 0.96489 1.02634 0.94736 1.70094 1.48408 1.39312 0.99545 0.85434 0.79131 0.78545 0.77553 1.19003 1.20872 1.19010 0.94238 0.90476 0.91265 0.89736 0.93780 0.91351 0.90396 0.80773 0.77438 0.91744 0.91741 0.91426 0.91446 0.98451 0.98434 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 9.09 71.98 0.65 -1.67 16 2 C -0.08 -1.70 3.07 -11.54 -0.04 -1.74 16 3 C -0.13 -2.19 8.99 71.98 0.65 -1.54 16 4 C 0.01 0.12 4.72 -20.41 -0.10 0.03 16 5 C -0.16 -2.33 9.18 21.08 0.19 -2.13 16 6 C -0.20 -2.60 10.92 66.82 0.73 -1.87 16 7 S 0.25 4.84 22.93 -56.49 -1.30 3.54 16 8 C -0.31 -8.39 6.45 24.05 0.16 -8.24 16 9 C 0.53 18.33 7.91 69.95 0.55 18.89 16 10 O -0.53 -20.25 13.79 19.41 0.27 -19.98 16 11 O -0.36 -12.89 10.08 -58.08 -0.59 -13.47 16 12 C 0.08 3.15 5.48 71.98 0.39 3.55 16 13 C -0.09 -3.99 5.53 30.60 0.17 -3.82 16 14 C 0.03 1.45 4.97 29.85 0.15 1.60 16 15 C -0.55 -31.21 9.11 25.60 0.23 -30.98 16 16 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 17 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 18 N -0.93 -57.32 13.29 21.45 0.28 -57.04 16 19 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 20 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 23 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.08 0.97 8.00 -2.39 -0.02 0.95 16 25 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.08 2.48 4.96 -2.39 -0.01 2.47 16 27 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.08 0.89 7.50 -2.38 -0.02 0.88 16 30 H 0.18 1.51 7.67 -2.91 -0.02 1.49 16 31 H 0.21 1.05 8.06 -2.91 -0.02 1.03 16 32 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.06 2.55 8.14 -2.38 -0.02 2.53 16 34 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 35 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 36 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 37 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 38 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -69.12 335.48 5.95 -63.18 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: 1.04 Total: 4.99 kcal Atomic # 6 Polarization: -31.73 SS G_CDS: 4.21 Total: -27.52 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: 0.28 Total: -57.04 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -0.32 Total: -33.46 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: 4.84 SS G_CDS: -1.30 Total: 3.54 kcal Total: -69.12 5.95 -63.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064014722.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.762 kcal (2) G-P(sol) polarization free energy of solvation -69.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds