Wall clock time and date at job start Tue Mar 31 2020 05:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38274 * 119.94274 * 2 1 4 4 C 1.38275 * 120.16058 * 180.30132 * 3 2 1 5 5 C 1.38304 * 120.03961 * 359.45105 * 4 3 2 6 6 F 1.35097 * 120.05140 * 180.25539 * 5 4 3 7 7 C 1.39054 * 119.88676 * 0.27219 * 5 4 3 8 8 N 1.40023 * 120.07387 * 180.02562 * 7 5 4 9 9 C 1.34777 * 120.00223 * 132.73862 * 8 7 5 10 10 S 1.71199 * 119.99932 * 4.27364 * 9 8 7 11 11 N 1.34775 * 119.99990 * 184.27197 * 9 8 7 12 12 C 1.46497 * 120.00249 * 0.02562 * 11 9 8 13 13 C 1.46507 * 119.99693 * 179.97438 * 11 9 8 14 14 C 1.50705 * 109.46754 * 90.00720 * 13 11 9 15 15 H 1.08000 * 119.99886 * 359.97438 * 14 13 11 16 16 C 1.37879 * 119.99902 * 180.02562 * 14 13 11 17 17 N 1.31508 * 119.99988 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99699 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47221 * 60.00094 * 18 16 14 20 20 H 1.48502 * 109.46926 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47328 * 299.99655 * 18 16 14 22 22 C 1.38140 * 119.94361 * 179.74999 * 2 1 3 23 23 H 1.09001 * 109.46717 * 270.25108 * 1 2 3 24 24 H 1.08993 * 109.47391 * 30.24963 * 1 2 3 25 25 H 1.08999 * 109.46797 * 150.25479 * 1 2 3 26 26 H 1.08003 * 119.92478 * 0.04831 * 3 2 1 27 27 H 1.07993 * 119.98130 * 179.72613 * 4 3 2 28 28 H 0.97001 * 120.00167 * 312.73578 * 8 7 5 29 29 H 1.08997 * 109.47558 * 89.99947 * 12 11 9 30 30 H 1.09008 * 109.47103 * 209.99899 * 12 11 9 31 31 H 1.09006 * 109.46706 * 329.99417 * 12 11 9 32 32 H 1.09002 * 109.47174 * 209.99660 * 13 11 9 33 33 H 1.08989 * 109.47258 * 330.00469 * 13 11 9 34 34 H 0.97005 * 120.00115 * 180.02562 * 17 16 14 35 35 H 1.08000 * 120.02806 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5800 1.2034 -0.0063 5 6 4.2769 0.0088 -0.0011 6 9 5.6279 0.0137 -0.0021 7 6 3.5847 -1.1972 0.0047 8 7 4.2864 -2.4089 0.0104 9 6 3.9386 -3.3849 0.8724 10 16 2.5717 -3.1866 1.8839 11 7 4.6669 -4.5170 0.9379 12 6 5.8368 -4.6866 0.0727 13 6 4.2891 -5.5777 1.8753 14 6 3.3357 -6.5293 1.1994 15 1 3.0405 -6.3605 0.1743 16 6 2.8397 -7.6147 1.8900 17 7 3.1989 -7.8198 3.1383 18 14 1.6574 -8.7936 1.0523 19 1 2.3159 -9.3945 -0.1353 20 1 1.2736 -9.8682 2.0028 21 1 0.4424 -8.0552 0.6240 22 6 2.1966 -1.1970 0.0052 23 1 -0.3633 0.0045 1.0277 24 1 -0.3634 0.8877 -0.5177 25 1 -0.3633 -0.8923 -0.5099 26 1 1.6551 2.1323 0.0008 27 1 4.1161 2.1409 -0.0107 28 1 5.0227 -2.5459 -0.6059 29 1 6.7224 -4.3038 0.5799 30 1 5.9743 -5.7449 -0.1493 31 1 5.6843 -4.1372 -0.8564 32 1 5.1812 -6.1195 2.1896 33 1 3.8056 -5.1370 2.7470 34 1 2.8502 -8.5837 3.6241 35 1 1.6561 -2.1320 0.0089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065695360.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:08 Heat of formation + Delta-G solvation = 6.953432 kcal Electronic energy + Delta-G solvation = -19599.191196 eV Core-core repulsion = 16445.284982 eV Total energy + Delta-G solvation = -3153.906215 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.090 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.87019 -39.86299 -38.30195 -35.40015 -32.71106 -32.12271 -29.87636 -28.32409 -27.10647 -26.41045 -23.91421 -22.51173 -21.56748 -20.90997 -18.18308 -17.59560 -17.06041 -16.62579 -16.26182 -15.57202 -15.34192 -14.59326 -14.40460 -14.27789 -13.81182 -13.67741 -13.54374 -13.37871 -12.63759 -12.35431 -12.18646 -11.93354 -11.70769 -11.47104 -11.42796 -11.20828 -10.95861 -10.72192 -10.40931 -10.19636 -9.94838 -9.13085 -8.57757 -8.48777 -8.03341 -6.99757 -6.31535 -6.10046 -4.14745 1.07303 1.34632 2.07560 2.54336 3.15882 3.29717 3.35258 3.38931 3.65115 3.72943 4.26658 4.40787 4.77304 4.91681 5.06281 5.20643 5.25180 5.27340 5.43766 5.51725 5.72557 5.75007 5.77007 5.90580 6.12590 6.17634 6.29334 6.40450 6.51177 6.71108 7.02696 7.05386 7.37636 7.45063 7.82276 7.84815 8.07156 8.83134 9.48358 10.98486 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.022080 B = 0.005105 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.790009 B = 5483.586997 C = 6309.527661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.093 4.093 3 C -0.094 4.094 4 C -0.153 4.153 5 C 0.078 3.922 6 F -0.143 7.143 7 C 0.116 3.884 8 N -0.653 5.653 9 C 0.551 3.449 10 S -0.627 6.627 11 N -0.535 5.535 12 C 0.060 3.940 13 C 0.235 3.765 14 C -0.523 4.523 15 H 0.056 0.944 16 C 0.069 3.931 17 N -0.889 5.889 18 Si 0.901 3.099 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.039 4.039 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.129 0.871 27 H 0.134 0.866 28 H 0.401 0.599 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.040 0.960 33 H 0.080 0.920 34 H 0.265 0.735 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.446 15.168 -9.514 18.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.096 4.096 3 C -0.113 4.113 4 C -0.173 4.173 5 C 0.056 3.944 6 F -0.122 7.122 7 C 0.020 3.980 8 N -0.284 5.284 9 C 0.194 3.806 10 S -0.492 6.492 11 N -0.238 5.238 12 C -0.086 4.086 13 C 0.117 3.883 14 C -0.562 4.562 15 H 0.074 0.926 16 C -0.134 4.134 17 N -0.528 5.528 18 Si 0.728 3.272 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.063 4.063 23 H 0.092 0.908 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.147 0.853 27 H 0.152 0.848 28 H 0.241 0.759 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.693 14.913 -8.596 17.296 hybrid contribution 0.908 -0.944 -1.177 1.761 sum 2.601 13.969 -9.773 17.246 Atomic orbital electron populations 1.20727 0.90547 1.02510 1.02727 1.19787 0.96626 0.92125 1.01046 1.20853 0.92856 0.97957 0.99646 1.20792 0.94862 0.96058 1.05579 1.17587 0.76544 0.93460 1.06813 1.91451 1.29052 1.97374 1.94278 1.17312 0.91760 0.82578 1.06320 1.42140 1.36077 1.12907 1.37260 1.22310 0.90801 0.81714 0.85815 1.93088 1.19723 1.87609 1.48767 1.47818 1.24007 1.14970 1.36966 1.22025 0.88247 1.04747 0.93592 1.20060 0.96864 0.82511 0.88861 1.21058 1.27858 1.08391 0.98854 0.92577 1.24825 0.96212 0.97643 0.94744 1.69906 1.44124 1.29464 1.09262 0.86518 0.81557 0.80162 0.78962 1.20433 1.21099 1.19954 1.21421 0.91598 1.00006 0.93250 0.90835 0.91798 0.91289 0.85280 0.84805 0.75904 0.91776 0.88618 0.92305 0.94178 0.90223 0.92487 0.82514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.01 36.01 0.36 -0.78 16 2 C -0.09 -1.20 5.88 -104.64 -0.62 -1.81 16 3 C -0.09 -1.04 9.69 -39.55 -0.38 -1.42 16 4 C -0.15 -1.78 10.02 -39.54 -0.40 -2.18 16 5 C 0.08 1.10 7.31 -39.25 -0.29 0.81 16 6 F -0.14 -2.02 17.08 2.25 0.04 -1.98 16 7 C 0.12 1.82 5.89 -83.60 -0.49 1.33 16 8 N -0.65 -10.58 5.03 -11.35 -0.06 -10.64 16 9 C 0.55 11.16 7.56 -86.92 -0.66 10.51 16 10 S -0.63 -15.09 24.39 -107.50 -2.62 -17.72 16 11 N -0.53 -10.72 2.86 -184.99 -0.53 -11.25 16 12 C 0.06 0.87 10.24 59.85 0.61 1.48 16 13 C 0.24 5.84 4.92 -5.19 -0.03 5.81 16 14 C -0.52 -14.13 9.39 -34.44 -0.32 -14.45 16 15 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 16 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 17 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 18 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 22 C -0.04 -0.62 7.53 -39.41 -0.30 -0.92 16 23 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 25 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 26 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 27 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 28 H 0.40 5.31 6.52 -40.82 -0.27 5.05 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.10 1.38 8.07 -51.92 -0.42 0.96 16 31 H 0.06 0.68 6.30 -51.93 -0.33 0.35 16 32 H 0.04 1.00 8.07 -51.93 -0.42 0.59 16 33 H 0.08 2.25 6.58 -51.93 -0.34 1.91 16 34 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.16 2.83 6.31 -49.63 -0.31 2.52 16 LS Contribution 313.94 15.07 4.73 4.73 Total: -1.00 -32.31 313.94 -9.49 -41.79 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -4.16 Total: 3.43 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -2.60 Total: 0.18 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 0.15 Total: -46.91 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -15.09 SS G_CDS: -2.62 Total: -17.72 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.31 -9.49 -41.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065695360.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.747 kcal (2) G-P(sol) polarization free energy of solvation -32.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds