Wall clock time and date at job start Tue Mar 31 2020 05:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47437 * 2 1 4 4 C 1.46508 * 120.00049 * 270.00364 * 3 2 1 5 5 C 1.50701 * 109.46671 * 269.99795 * 4 3 2 6 6 H 1.07992 * 120.00284 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99410 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99593 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00257 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47480 * 89.99843 * 9 7 5 11 11 H 1.48509 * 109.47100 * 209.99688 * 9 7 5 12 12 H 1.48498 * 109.47061 * 329.99527 * 9 7 5 13 13 C 1.34779 * 120.00237 * 90.00134 * 3 2 1 14 14 S 1.71194 * 120.00080 * 180.02562 * 13 3 2 15 15 N 1.34781 * 119.99633 * 0.27357 * 13 3 2 16 16 C 1.40017 * 119.99765 * 175.33913 * 15 13 3 17 17 C 1.38820 * 120.07697 * 47.31589 * 16 15 13 18 18 C 1.38149 * 119.95037 * 179.97438 * 17 16 15 19 19 C 1.38281 * 120.11377 * 0.02562 * 18 17 16 20 20 C 1.38270 * 120.15471 * 359.97438 * 19 18 17 21 21 C 1.38299 * 120.05147 * 359.67994 * 20 19 18 22 22 F 1.35099 * 120.06416 * 180.32456 * 21 20 19 23 23 H 1.09010 * 109.46862 * 300.00095 * 1 2 3 24 24 H 1.09000 * 109.47413 * 59.99901 * 1 2 3 25 25 H 1.09003 * 109.47729 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46402 * 239.99940 * 2 1 3 27 27 H 1.09001 * 109.46770 * 120.00492 * 2 1 3 28 28 H 1.09000 * 109.46651 * 29.99964 * 4 3 2 29 29 H 1.08999 * 109.47190 * 149.99695 * 4 3 2 30 30 H 0.97002 * 119.99454 * 179.97438 * 8 7 5 31 31 H 0.97003 * 119.99823 * 355.34610 * 15 13 3 32 32 H 1.07994 * 120.02304 * 359.97438 * 17 16 15 33 33 H 1.07997 * 119.93735 * 179.97438 * 18 17 16 34 34 H 1.07999 * 119.92115 * 179.97438 * 19 18 17 35 35 H 1.08007 * 119.97349 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3426 1.2301 -1.0963 7 6 4.1491 2.3895 -2.8780 8 7 5.3913 2.1832 -3.2574 9 14 3.0128 3.4351 -3.9292 10 1 3.1163 4.8553 -3.5082 11 1 3.4057 3.3119 -5.3561 12 1 1.6131 2.9691 -3.7592 13 6 2.2431 2.0165 1.1672 14 16 2.8132 3.6307 1.1671 15 7 2.0237 1.3793 2.3344 16 6 2.3490 2.0036 3.5447 17 6 1.9625 3.3166 3.7761 18 6 2.2845 3.9299 4.9715 19 6 2.9915 3.2382 5.9378 20 6 3.3787 1.9301 5.7120 21 6 3.0538 1.3074 4.5207 22 9 3.4264 0.0273 4.3025 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3635 -1.0277 0.0005 26 1 1.8932 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8900 28 1 1.5816 1.6877 -2.0284 29 1 2.0956 3.1410 -1.1384 30 1 5.7171 2.5731 -4.0837 31 1 1.6405 0.4881 2.3359 32 1 1.4107 3.8583 3.0223 33 1 1.9840 4.9516 5.1511 34 1 3.2419 3.7208 6.8710 35 1 3.9313 1.3927 6.4686 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066006306.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:03 Heat of formation + Delta-G solvation = 13.204992 kcal Electronic energy + Delta-G solvation = -19813.907523 eV Core-core repulsion = 16660.272396 eV Total energy + Delta-G solvation = -3153.635127 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.090 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.88578 -39.92043 -38.39463 -35.46953 -32.76546 -31.30675 -30.55611 -29.80766 -27.65630 -24.77860 -23.37679 -22.74308 -21.98082 -20.57631 -18.47399 -17.71677 -17.17280 -16.99105 -16.17000 -15.69648 -15.50454 -14.88821 -14.57539 -14.44704 -13.96658 -13.78901 -13.55173 -13.16951 -12.62889 -12.46456 -12.31698 -11.99928 -11.83969 -11.74681 -11.29323 -11.18135 -11.04620 -10.64997 -10.44627 -10.30137 -9.65669 -9.23255 -8.78178 -8.61391 -8.08406 -7.13813 -6.42708 -6.11409 -4.11440 1.05744 1.32357 1.94743 2.47398 3.06256 3.28247 3.32807 3.38781 3.55511 3.69202 4.24229 4.37287 4.78204 4.81010 5.00166 5.06653 5.19436 5.25146 5.27581 5.39620 5.55184 5.57888 5.77069 5.97203 6.04794 6.14455 6.19378 6.30576 6.44697 6.57057 6.67695 6.93259 7.02983 7.32118 7.47276 7.66051 8.39617 8.88300 9.45626 11.01676 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.021379 B = 0.005398 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.391718 B = 5185.663990 C = 5580.085444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.084 3.916 3 N -0.527 5.527 4 C 0.208 3.792 5 C -0.524 4.524 6 H 0.074 0.926 7 C 0.081 3.919 8 N -0.892 5.892 9 Si 0.875 3.125 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.557 3.443 14 S -0.627 6.627 15 N -0.650 5.650 16 C 0.110 3.890 17 C -0.040 4.040 18 C -0.127 4.127 19 C -0.093 4.093 20 C -0.156 4.156 21 C 0.087 3.913 22 F -0.141 7.141 23 H 0.053 0.947 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.104 0.896 27 H 0.069 0.931 28 H 0.037 0.963 29 H 0.070 0.930 30 H 0.266 0.734 31 H 0.402 0.598 32 H 0.155 0.845 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.158 -3.791 15.290 19.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.042 4.042 3 N -0.230 5.230 4 C 0.089 3.911 5 C -0.562 4.562 6 H 0.092 0.908 7 C -0.123 4.123 8 N -0.530 5.530 9 Si 0.702 3.298 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.193 1.193 13 C 0.199 3.801 14 S -0.491 6.491 15 N -0.280 5.280 16 C 0.015 3.985 17 C -0.064 4.064 18 C -0.147 4.147 19 C -0.111 4.111 20 C -0.176 4.176 21 C 0.064 3.936 22 F -0.120 7.120 23 H 0.073 0.927 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.123 0.877 27 H 0.088 0.912 28 H 0.055 0.945 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.242 0.758 32 H 0.173 0.827 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.629 -2.801 14.868 18.490 hybrid contribution -0.574 -1.120 -0.767 1.474 sum -11.203 -3.921 14.101 18.431 Atomic orbital electron populations 1.22225 0.95092 1.02632 1.02937 1.21864 0.94652 0.83346 1.04372 1.47525 1.57145 1.12441 1.05842 1.20348 0.98575 0.95305 0.76916 1.20982 0.94440 1.33550 1.07277 0.90794 1.24725 0.94948 0.95421 0.97179 1.69881 1.15023 1.44642 1.23473 0.86875 0.81105 0.82179 0.79677 1.19379 1.21115 1.19254 1.22253 0.82495 0.94214 0.81098 1.93092 1.65042 0.98284 1.92705 1.42098 1.63847 1.19461 1.02615 1.17367 1.01662 0.94751 0.84733 1.21493 0.96837 0.92186 0.95853 1.21050 1.00288 1.00487 0.92925 1.20997 0.97358 0.93295 0.99485 1.20852 1.04072 0.96428 0.96289 1.17629 0.99519 0.80109 0.96307 1.91470 1.89665 1.35572 1.95245 0.92747 0.91334 0.90946 0.87748 0.91227 0.94527 0.91184 0.92416 0.75810 0.82735 0.85079 0.85215 0.84767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 10.24 37.16 0.38 -1.50 16 2 C 0.08 1.19 5.86 -4.04 -0.02 1.16 16 3 N -0.53 -10.14 2.46 -177.08 -0.43 -10.57 16 4 C 0.21 4.82 3.99 -5.19 -0.02 4.80 16 5 C -0.52 -14.60 9.94 -34.44 -0.34 -14.94 16 6 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 7 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 8 N -0.89 -27.32 13.96 55.43 0.77 -26.55 16 9 Si 0.87 21.24 27.47 -169.99 -4.67 16.57 16 10 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 13 C 0.56 10.93 7.56 -86.91 -0.66 10.27 16 14 S -0.63 -14.70 24.39 -107.50 -2.62 -17.32 16 15 N -0.65 -10.24 4.99 -11.34 -0.06 -10.30 16 16 C 0.11 1.69 5.89 -83.60 -0.49 1.20 16 17 C -0.04 -0.59 7.88 -39.40 -0.31 -0.90 16 18 C -0.13 -1.50 10.04 -39.60 -0.40 -1.90 16 19 C -0.09 -0.97 10.04 -39.55 -0.40 -1.37 16 20 C -0.16 -1.82 10.02 -39.55 -0.40 -2.21 16 21 C 0.09 1.23 7.31 -39.25 -0.29 0.94 16 22 F -0.14 -2.07 17.08 2.25 0.04 -2.03 16 23 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.10 1.53 8.07 -51.93 -0.42 1.12 16 27 H 0.07 0.86 6.42 -51.93 -0.33 0.52 16 28 H 0.04 0.80 7.13 -51.93 -0.37 0.43 16 29 H 0.07 1.75 6.01 -51.93 -0.31 1.44 16 30 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.40 5.20 6.62 -40.82 -0.27 4.93 16 32 H 0.16 2.48 6.30 -49.54 -0.31 2.17 16 33 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 35 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 LS Contribution 310.85 15.07 4.68 4.68 Total: -1.00 -33.92 310.85 -9.47 -43.39 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -4.14 Total: 4.36 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -3.04 Total: -2.23 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 0.28 Total: -47.42 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Atomic # 16 Polarization: -14.70 SS G_CDS: -2.62 Total: -17.32 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.92 -9.47 -43.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066006306.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.596 kcal (2) G-P(sol) polarization free energy of solvation -33.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds