Wall clock time and date at job start Tue Mar 31 2020 05:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47437 * 2 1 4 4 C 1.46508 * 120.00049 * 270.00364 * 3 2 1 5 5 C 1.50701 * 109.46671 * 269.99795 * 4 3 2 6 6 H 1.07992 * 120.00284 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99410 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99593 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00257 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47480 * 89.99843 * 9 7 5 11 11 H 1.48509 * 109.47100 * 209.99688 * 9 7 5 12 12 H 1.48498 * 109.47061 * 329.99527 * 9 7 5 13 13 C 1.34779 * 120.00237 * 90.00134 * 3 2 1 14 14 S 1.71194 * 120.00080 * 180.02562 * 13 3 2 15 15 N 1.34781 * 119.99633 * 0.27357 * 13 3 2 16 16 C 1.40017 * 119.99765 * 175.33913 * 15 13 3 17 17 C 1.38820 * 120.07697 * 47.31589 * 16 15 13 18 18 C 1.38149 * 119.95037 * 179.97438 * 17 16 15 19 19 C 1.38281 * 120.11377 * 0.02562 * 18 17 16 20 20 C 1.38270 * 120.15471 * 359.97438 * 19 18 17 21 21 C 1.38299 * 120.05147 * 359.67994 * 20 19 18 22 22 F 1.35099 * 120.06416 * 180.32456 * 21 20 19 23 23 H 1.09010 * 109.46862 * 300.00095 * 1 2 3 24 24 H 1.09000 * 109.47413 * 59.99901 * 1 2 3 25 25 H 1.09003 * 109.47729 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46402 * 239.99940 * 2 1 3 27 27 H 1.09001 * 109.46770 * 120.00492 * 2 1 3 28 28 H 1.09000 * 109.46651 * 29.99964 * 4 3 2 29 29 H 1.08999 * 109.47190 * 149.99695 * 4 3 2 30 30 H 0.97002 * 119.99454 * 179.97438 * 8 7 5 31 31 H 0.97003 * 119.99823 * 355.34610 * 15 13 3 32 32 H 1.07994 * 120.02304 * 359.97438 * 17 16 15 33 33 H 1.07997 * 119.93735 * 179.97438 * 18 17 16 34 34 H 1.07999 * 119.92115 * 179.97438 * 19 18 17 35 35 H 1.08007 * 119.97349 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3426 1.2301 -1.0963 7 6 4.1491 2.3895 -2.8780 8 7 5.3913 2.1832 -3.2574 9 14 3.0128 3.4351 -3.9292 10 1 3.1163 4.8553 -3.5082 11 1 3.4057 3.3119 -5.3561 12 1 1.6131 2.9691 -3.7592 13 6 2.2431 2.0165 1.1672 14 16 2.8132 3.6307 1.1671 15 7 2.0237 1.3793 2.3344 16 6 2.3490 2.0036 3.5447 17 6 1.9625 3.3166 3.7761 18 6 2.2845 3.9299 4.9715 19 6 2.9915 3.2382 5.9378 20 6 3.3787 1.9301 5.7120 21 6 3.0538 1.3074 4.5207 22 9 3.4264 0.0273 4.3025 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3635 -1.0277 0.0005 26 1 1.8932 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8900 28 1 1.5816 1.6877 -2.0284 29 1 2.0956 3.1410 -1.1384 30 1 5.7171 2.5731 -4.0837 31 1 1.6405 0.4881 2.3359 32 1 1.4107 3.8583 3.0223 33 1 1.9840 4.9516 5.1511 34 1 3.2419 3.7208 6.8710 35 1 3.9313 1.3927 6.4686 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066006306.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:03 Heat of formation + Delta-G solvation = -7.177509 kcal Electronic energy + Delta-G solvation = -19814.791375 eV Core-core repulsion = 16660.272396 eV Total energy + Delta-G solvation = -3154.518978 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.090 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.00014 -41.23068 -39.62109 -36.79981 -34.79717 -32.60693 -31.57181 -31.17204 -29.31391 -26.07434 -24.97397 -23.87084 -23.26523 -21.98196 -19.77808 -19.18725 -19.02518 -18.26927 -17.28443 -17.14232 -16.68609 -16.30600 -16.27731 -15.58037 -15.32964 -14.91407 -14.84469 -14.52456 -14.28076 -13.83285 -13.66154 -13.35356 -13.00057 -12.92722 -12.70765 -12.54639 -12.35057 -12.23128 -12.08486 -11.99735 -11.76327 -10.82075 -10.61645 -9.86259 -9.33122 -8.90387 -8.32628 -8.17189 -6.37283 -0.09076 0.29870 0.49527 0.95374 1.32990 1.42178 1.44838 1.57422 2.20091 2.32512 2.68243 3.04055 3.19380 3.69692 3.82889 4.02684 4.07293 4.20166 4.35062 4.39314 4.49375 4.54304 4.69753 4.76655 4.87118 5.05568 5.13883 5.16828 5.17295 5.30291 5.38578 5.53863 5.54993 5.69272 5.99355 6.20660 6.24993 6.60858 7.23869 8.84756 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.021379 B = 0.005398 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.391718 B = 5185.663990 C = 5580.085444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.075 3.925 3 N -0.531 5.531 4 C 0.220 3.780 5 C -0.522 4.522 6 H 0.024 0.976 7 C 0.020 3.980 8 N -0.944 5.944 9 Si 0.944 3.056 10 H -0.278 1.278 11 H -0.278 1.278 12 H -0.233 1.233 13 C 0.574 3.426 14 S -0.716 6.716 15 N -0.627 5.627 16 C 0.077 3.923 17 C -0.056 4.056 18 C -0.126 4.126 19 C -0.077 4.077 20 C -0.152 4.152 21 C 0.071 3.929 22 F -0.148 7.148 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.106 0.894 26 H 0.100 0.900 27 H 0.089 0.911 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.268 0.732 31 H 0.418 0.582 32 H 0.134 0.866 33 H 0.155 0.845 34 H 0.172 0.828 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.212 -4.334 16.967 21.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.049 4.049 3 N -0.233 5.233 4 C 0.099 3.901 5 C -0.560 4.560 6 H 0.043 0.957 7 C -0.179 4.179 8 N -0.584 5.584 9 Si 0.767 3.233 10 H -0.204 1.204 11 H -0.203 1.203 12 H -0.156 1.156 13 C 0.212 3.788 14 S -0.583 6.583 15 N -0.257 5.257 16 C -0.017 4.017 17 C -0.079 4.079 18 C -0.145 4.145 19 C -0.095 4.095 20 C -0.171 4.171 21 C 0.050 3.950 22 F -0.126 7.126 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.125 0.875 26 H 0.118 0.882 27 H 0.107 0.893 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.260 0.740 32 H 0.152 0.848 33 H 0.173 0.827 34 H 0.190 0.810 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -12.729 -3.415 16.617 21.209 hybrid contribution 0.110 -1.052 -1.075 1.508 sum -12.619 -4.467 15.542 20.512 Atomic orbital electron populations 1.22172 0.91983 1.04832 1.02812 1.22246 0.97087 0.80373 1.05169 1.47476 1.57135 1.14156 1.04563 1.19963 0.95975 0.95138 0.79058 1.21136 0.96166 1.32261 1.06485 0.95747 1.25682 0.96545 0.96810 0.98838 1.70040 1.17447 1.46525 1.24431 0.85777 0.80612 0.79290 0.77638 1.20377 1.20303 1.15601 1.21771 0.81789 0.92927 0.82300 1.93191 1.68919 1.02427 1.93748 1.41943 1.62300 1.19629 1.01815 1.17647 1.03800 0.95578 0.84710 1.21433 0.97547 0.92030 0.96864 1.21402 0.99546 1.01539 0.92041 1.21476 0.95078 0.92599 1.00356 1.21285 1.03196 0.96975 0.95665 1.17884 1.00094 0.80017 0.97049 1.91450 1.89799 1.35997 1.95396 0.92318 0.92017 0.87513 0.88205 0.89312 0.91958 0.92703 0.92302 0.74039 0.84809 0.82749 0.81050 0.81963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 10.24 71.98 0.74 -2.32 16 2 C 0.08 2.02 5.86 86.38 0.51 2.52 16 3 N -0.53 -20.36 2.46 -714.16 -1.75 -22.11 16 4 C 0.22 10.18 3.99 85.63 0.34 10.52 16 5 C -0.52 -29.95 9.94 25.60 0.25 -29.69 16 6 H 0.02 1.60 8.06 -2.91 -0.02 1.57 16 7 C 0.02 1.15 5.47 84.65 0.46 1.61 16 8 N -0.94 -59.86 13.96 21.45 0.30 -59.56 16 9 Si 0.94 44.05 27.47 68.60 1.88 45.93 16 10 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.23 -9.48 6.54 99.48 0.65 -8.83 16 13 C 0.57 22.81 7.56 179.05 1.35 24.17 16 14 S -0.72 -34.90 24.39 -56.49 -1.38 -36.28 16 15 N -0.63 -19.58 4.99 -189.80 -0.95 -20.53 16 16 C 0.08 2.33 5.89 38.17 0.22 2.56 16 17 C -0.06 -1.63 7.88 22.39 0.18 -1.45 16 18 C -0.13 -2.70 10.04 22.26 0.22 -2.48 16 19 C -0.08 -1.33 10.04 22.29 0.22 -1.10 16 20 C -0.15 -3.07 10.02 22.29 0.22 -2.85 16 21 C 0.07 1.93 7.31 22.48 0.16 2.09 16 22 F -0.15 -4.17 17.08 44.97 0.77 -3.41 16 23 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 24 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.10 2.81 8.07 -2.38 -0.02 2.79 16 27 H 0.09 2.02 6.42 -2.39 -0.02 2.00 16 28 H 0.06 2.58 7.13 -2.39 -0.02 2.57 16 29 H 0.06 2.76 6.01 -2.39 -0.01 2.74 16 30 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 31 H 0.42 10.29 6.62 -92.71 -0.61 9.68 16 32 H 0.13 4.46 6.30 -4.79 -0.03 4.43 16 33 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 34 H 0.17 1.59 8.06 -2.91 -0.02 1.56 16 35 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -78.91 310.85 4.20 -74.71 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.43 Total: 17.67 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 4.89 Total: 3.57 kcal Atomic # 7 Polarization: -99.80 SS G_CDS: -2.40 Total: -102.20 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.77 Total: -3.41 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.88 Total: 45.93 kcal Atomic # 16 Polarization: -34.90 SS G_CDS: -1.38 Total: -36.28 kcal Total: -78.91 4.20 -74.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066006306.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.534 kcal (2) G-P(sol) polarization free energy of solvation -78.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds