Wall clock time and date at job start Tue Mar 31 2020 05:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38262 * 120.00038 * 2 1 4 4 C 1.38205 * 120.00475 * 179.97438 * 3 2 1 5 5 C 1.38253 * 119.99884 * 0.02562 * 4 3 2 6 6 C 1.38220 * 120.00046 * 359.94758 * 5 4 3 7 7 C 1.38208 * 120.00408 * 179.97438 * 2 1 3 8 8 C 1.50701 * 119.99804 * 0.02562 * 7 2 1 9 9 S 1.81397 * 109.47029 * 270.01732 * 8 7 2 10 10 O 1.42096 * 108.58047 * 294.48935 * 9 8 7 11 11 O 1.42104 * 108.57914 * 65.51353 * 9 8 7 12 12 C 1.81401 * 101.92462 * 180.02562 * 9 8 7 13 13 C 1.52990 * 109.47450 * 180.02562 * 12 9 8 14 14 C 1.53007 * 109.47320 * 179.97438 * 13 12 9 15 15 C 1.50700 * 109.46907 * 179.97438 * 14 13 12 16 16 H 1.07992 * 120.00537 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99635 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99885 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99982 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47142 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47366 * 119.99835 * 19 17 15 22 22 H 1.48502 * 109.46915 * 239.99369 * 19 17 15 23 23 H 1.08997 * 109.47001 * 270.01980 * 1 2 3 24 24 H 1.08997 * 109.47350 * 30.02356 * 1 2 3 25 25 H 1.08998 * 109.46705 * 150.02574 * 1 2 3 26 26 H 1.08000 * 119.99741 * 359.97438 * 3 2 1 27 27 H 1.08005 * 120.00151 * 179.97438 * 4 3 2 28 28 H 1.08002 * 120.00347 * 179.97438 * 5 4 3 29 29 H 1.08000 * 119.99660 * 180.32192 * 6 5 4 30 30 H 1.08990 * 109.47415 * 30.02092 * 8 7 2 31 31 H 1.09006 * 109.46768 * 150.01991 * 8 7 2 32 32 H 1.09007 * 109.46788 * 300.00514 * 12 9 8 33 33 H 1.08994 * 109.46942 * 59.99566 * 12 9 8 34 34 H 1.09007 * 109.47296 * 299.99898 * 13 12 9 35 35 H 1.09006 * 109.47332 * 59.99931 * 13 12 9 36 36 H 1.08994 * 109.46896 * 300.00052 * 14 13 12 37 37 H 1.09000 * 109.46468 * 59.99604 * 14 13 12 38 38 H 0.96997 * 119.99844 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0002 0.0005 6 6 3.5806 -1.1969 0.0011 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0005 9 16 1.1412 -3.0250 1.7108 10 8 2.3901 -3.3124 2.3247 11 8 0.2669 -2.0867 2.3228 12 6 0.2430 -4.5829 1.4726 13 6 -0.1059 -5.1840 2.8355 14 6 -0.8641 -6.4978 2.6345 15 6 -1.2071 -7.0901 3.9771 16 1 -0.9134 -6.5809 4.8830 17 6 -1.8951 -8.2829 4.0488 18 7 -2.2524 -8.9033 2.9455 19 14 -2.3210 -9.0169 5.7128 20 1 -1.8110 -8.1308 6.7899 21 1 -3.7954 -9.1461 5.8342 22 1 -1.6948 -10.3577 5.8373 23 1 -0.3633 0.0004 1.0276 24 1 -0.3634 0.8897 -0.5142 25 1 -0.3633 -0.8902 -0.5134 26 1 1.6582 2.1327 -0.0004 27 1 4.1203 2.1329 0.0001 28 1 5.3517 0.0002 0.0005 29 1 4.1207 -2.1321 0.0064 30 1 0.4927 -2.3720 -0.5140 31 1 2.0342 -3.2618 -0.5126 32 1 -0.6738 -4.3920 0.9145 33 1 0.8681 -5.2813 0.9162 34 1 0.8107 -5.3749 3.3938 35 1 -0.7312 -4.4854 3.3915 36 1 -1.7806 -6.3065 2.0764 37 1 -0.2391 -7.1964 2.0784 38 1 -2.7367 -9.7422 2.9960 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067224819.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:59 Heat of formation + Delta-G solvation = -67.915235 kcal Electronic energy + Delta-G solvation = -19523.183529 eV Core-core repulsion = 16457.198319 eV Total energy + Delta-G solvation = -3065.985210 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.75502 -36.76552 -35.80853 -34.65531 -33.71952 -32.41346 -32.19206 -28.29431 -27.69032 -26.71528 -23.72838 -22.37493 -21.20554 -20.40024 -18.69301 -16.87433 -16.77014 -16.37593 -16.21955 -15.55345 -15.50687 -15.00130 -14.47693 -14.27369 -13.85859 -13.43768 -13.28480 -13.00083 -12.60792 -12.44267 -12.27538 -12.25253 -11.90707 -11.75404 -11.73995 -11.30767 -11.27532 -11.19513 -10.95850 -10.93135 -10.81583 -10.36180 -9.93664 -9.40971 -9.15209 -8.97673 -8.72600 -8.40965 -6.05816 -4.08551 0.01330 1.15721 1.17973 2.92775 3.29749 3.37265 3.42529 3.50407 3.74409 4.04936 4.30533 4.43134 4.55188 4.71253 4.73376 4.88488 5.07991 5.14985 5.17125 5.20750 5.30841 5.33944 5.48212 5.55409 5.68796 5.79881 5.88511 6.05839 6.20719 6.27658 6.30170 6.35854 6.47038 6.75943 6.88350 7.57130 7.66893 7.92626 8.33297 8.97998 9.56209 11.05513 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.043063 B = 0.003252 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.060537 B = 8607.162694 C = 8743.308498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.066 4.066 3 C -0.123 4.123 4 C -0.110 4.110 5 C -0.127 4.127 6 C -0.099 4.099 7 C -0.089 4.089 8 C -0.581 4.581 9 S 2.402 3.598 10 O -0.937 6.937 11 O -0.934 6.934 12 C -0.594 4.594 13 C -0.105 4.105 14 C 0.029 3.971 15 C -0.525 4.525 16 H 0.059 0.941 17 C 0.057 3.943 18 N -0.896 5.896 19 Si 0.894 3.106 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.094 0.906 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.126 0.874 27 H 0.124 0.876 28 H 0.126 0.874 29 H 0.130 0.870 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.021 0.979 37 H 0.021 0.979 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.253 18.170 -10.557 22.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.067 4.067 3 C -0.141 4.141 4 C -0.129 4.129 5 C -0.145 4.145 6 C -0.118 4.118 7 C -0.090 4.090 8 C -0.706 4.706 9 S 2.587 3.413 10 O -0.934 6.934 11 O -0.932 6.932 12 C -0.725 4.725 13 C -0.144 4.144 14 C -0.009 4.009 15 C -0.563 4.563 16 H 0.077 0.923 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.722 3.278 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 H 0.113 0.887 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.144 0.856 27 H 0.142 0.858 28 H 0.144 0.856 29 H 0.148 0.852 30 H 0.160 0.840 31 H 0.158 0.842 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.410 18.450 -9.852 22.935 hybrid contribution -0.447 -0.973 -0.096 1.075 sum 8.963 17.477 -9.947 22.017 Atomic orbital electron populations 1.21080 0.90669 1.02785 1.04353 1.19871 0.96571 0.92417 0.97793 1.21033 0.94303 0.97385 1.01335 1.21217 0.94325 0.98202 0.99141 1.21133 1.00127 0.92235 1.01013 1.21168 0.93106 0.99088 0.98450 1.18809 0.93539 0.91839 1.04795 1.29534 1.09868 1.04304 1.26866 1.08759 0.76593 0.78383 0.77580 1.93556 1.42563 1.84982 1.72331 1.93543 1.66655 1.60505 1.72452 1.30335 1.13657 1.18769 1.09721 1.21520 1.01862 1.01135 0.89863 1.19091 0.94927 0.89340 0.97537 1.21296 1.36003 1.06305 0.92691 0.92281 1.25024 0.95743 0.96966 0.96693 1.69965 1.39558 1.17074 1.26902 0.86497 0.78099 0.79075 0.84147 1.19566 1.20939 1.20945 0.88722 0.91176 0.91334 0.85580 0.85766 0.85582 0.85170 0.83972 0.84173 0.85352 0.85387 0.91450 0.91389 0.96092 0.96114 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.32 9.31 36.00 0.34 -0.99 16 2 C -0.07 -0.75 5.88 -104.63 -0.62 -1.36 16 3 C -0.12 -1.23 9.70 -39.58 -0.38 -1.61 16 4 C -0.11 -1.03 10.05 -39.59 -0.40 -1.43 16 5 C -0.13 -1.26 10.05 -39.58 -0.40 -1.66 16 6 C -0.10 -1.12 9.70 -39.58 -0.38 -1.51 16 7 C -0.09 -1.06 5.14 -104.63 -0.54 -1.59 16 8 C -0.58 -6.00 5.53 36.01 0.20 -5.80 16 9 S 2.40 34.68 4.70 -107.50 -0.51 34.17 16 10 O -0.94 -16.55 18.10 -57.83 -1.05 -17.59 16 11 O -0.93 -15.83 17.08 -57.83 -0.99 -16.82 16 12 C -0.59 -8.87 5.81 37.15 0.22 -8.65 16 13 C -0.10 -2.15 5.16 -26.73 -0.14 -2.28 16 14 C 0.03 0.74 4.97 -27.88 -0.14 0.60 16 15 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 16 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -26.58 13.29 55.43 0.74 -25.85 16 19 Si 0.89 21.64 29.54 -169.99 -5.02 16.61 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H 0.09 1.07 7.42 -51.93 -0.39 0.68 16 24 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 25 H 0.07 0.59 5.95 -51.93 -0.31 0.29 16 26 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 27 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 28 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 29 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.14 1.12 5.95 -51.93 -0.31 0.81 16 31 H 0.14 1.07 8.09 -51.92 -0.42 0.65 16 32 H 0.13 1.62 8.14 -51.92 -0.42 1.20 16 33 H 0.13 1.64 8.14 -51.93 -0.42 1.21 16 34 H 0.07 1.37 8.14 -51.92 -0.42 0.95 16 35 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 332.50 15.07 5.01 5.01 Total: -1.00 -35.48 332.50 -10.08 -45.56 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -5.61 Total: -1.19 kcal Atomic # 6 Polarization: -37.25 SS G_CDS: -2.65 Total: -39.90 kcal Atomic # 7 Polarization: -26.58 SS G_CDS: 0.74 Total: -25.85 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -2.03 Total: -34.42 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 34.68 SS G_CDS: -0.51 Total: 34.17 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.48 -10.08 -45.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067224819.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.353 kcal (2) G-P(sol) polarization free energy of solvation -35.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds