Wall clock time and date at job start Tue Mar 31 2020 05:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38258 * 119.99997 * 2 1 4 4 C 1.38211 * 119.99784 * 180.23526 * 3 2 1 5 5 C 1.38256 * 120.00062 * 359.47854 * 4 3 2 6 6 S 1.76201 * 120.00171 * 180.27951 * 5 4 3 7 7 O 1.42095 * 104.28066 * 206.07180 * 6 5 4 8 8 O 1.42097 * 104.27597 * 333.93652 * 6 5 4 9 9 C 1.81401 * 104.44771 * 90.00255 * 6 5 4 10 10 C 1.53001 * 109.47270 * 180.02562 * 9 6 5 11 11 C 1.52999 * 109.47167 * 180.02562 * 10 9 6 12 12 C 1.50697 * 109.47049 * 179.97438 * 11 10 9 13 13 H 1.08005 * 120.00257 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00346 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99737 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00503 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47092 * 60.00125 * 16 14 12 18 18 H 1.48498 * 109.47232 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47045 * 300.00249 * 16 14 12 20 20 C 1.38214 * 120.00160 * 0.26318 * 5 4 3 21 21 C 1.38212 * 119.99856 * 179.71368 * 2 1 3 22 22 C 1.50706 * 120.00275 * 0.02562 * 21 2 1 23 23 H 1.09003 * 109.47135 * 270.28406 * 1 2 3 24 24 H 1.09000 * 109.46785 * 30.28531 * 1 2 3 25 25 H 1.09002 * 109.47199 * 150.28503 * 1 2 3 26 26 H 1.07998 * 119.99823 * 359.97438 * 3 2 1 27 27 H 1.08002 * 120.00200 * 179.76459 * 4 3 2 28 28 H 1.09002 * 109.47170 * 300.00193 * 9 6 5 29 29 H 1.09004 * 109.46881 * 60.00341 * 9 6 5 30 30 H 1.09002 * 109.47040 * 300.00099 * 10 9 6 31 31 H 1.08995 * 109.46927 * 60.00040 * 10 9 6 32 32 H 1.09002 * 109.46956 * 299.99826 * 11 10 9 33 33 H 1.08995 * 109.47429 * 60.00023 * 11 10 9 34 34 H 0.96996 * 120.00235 * 180.02562 * 15 14 12 35 35 H 1.07997 * 120.00449 * 180.02562 * 20 5 4 36 36 H 1.09004 * 109.46442 * 270.02096 * 22 21 2 37 37 H 1.09000 * 109.46849 * 30.01503 * 22 21 2 38 38 H 1.08993 * 109.47102 * 150.01800 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5805 1.1973 -0.0049 5 6 4.2717 0.0000 0.0011 6 16 6.0337 -0.0001 0.0022 7 8 6.3846 -1.2398 -0.5970 8 8 6.3846 1.2342 -0.6083 9 6 6.4852 0.0079 1.7592 10 6 8.0092 0.0092 1.8942 11 6 8.3899 0.0153 3.3761 12 6 9.8910 0.0158 3.5090 13 1 10.5115 0.0118 2.6250 14 6 10.4724 0.0215 4.7592 15 7 9.7169 0.0270 5.8357 16 14 12.3331 0.0229 4.9241 17 1 12.8875 1.2328 4.2652 18 1 12.7026 0.0287 6.3623 19 1 12.8884 -1.1922 4.2757 20 6 3.5807 -1.1970 0.0065 21 6 2.1981 -1.1970 0.0060 22 6 1.4446 -2.5021 0.0119 23 1 -0.3633 0.0051 1.0277 24 1 -0.3633 0.8874 -0.5183 25 1 -0.3634 -0.8925 -0.5094 26 1 1.6583 2.1326 -0.0004 27 1 4.1205 2.1326 -0.0088 28 1 6.0779 0.9001 2.2349 29 1 6.0779 -0.8799 2.2430 30 1 8.4168 -0.8828 1.4184 31 1 8.4160 0.8971 1.4105 32 1 7.9823 0.9070 3.8522 33 1 7.9831 -0.8729 3.8594 34 1 10.1258 0.0313 6.7152 35 1 4.1206 -2.1323 0.0116 36 1 1.2623 -2.8116 1.0411 37 1 0.4925 -2.3743 -0.5031 38 1 2.0340 -3.2642 -0.4977 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068557015.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:01 Heat of formation + Delta-G solvation = -71.182098 kcal Electronic energy + Delta-G solvation = -19384.189091 eV Core-core repulsion = 16318.062219 eV Total energy + Delta-G solvation = -3066.126872 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.79473 -36.86477 -35.71682 -34.67603 -33.79008 -32.45938 -32.18721 -28.10275 -27.78043 -26.86411 -23.72741 -22.53231 -21.65518 -20.45694 -18.65091 -17.44728 -16.57268 -16.38032 -15.68683 -15.40272 -15.37662 -14.62108 -14.48494 -14.34465 -14.19750 -13.42126 -13.13808 -12.98998 -12.61477 -12.39612 -12.37784 -12.18505 -11.95232 -11.91013 -11.79207 -11.74736 -11.28633 -11.23598 -10.89197 -10.86672 -10.64696 -10.37003 -9.94451 -9.44425 -9.26044 -9.08788 -8.94225 -8.39984 -6.05189 -4.08367 0.25144 0.71147 1.10894 3.07095 3.25767 3.32851 3.36673 3.39935 4.07651 4.25807 4.43095 4.46362 4.54621 4.65527 4.82197 5.02935 5.11511 5.15595 5.16744 5.21187 5.31166 5.35259 5.43610 5.48802 5.53264 5.75969 5.85601 5.87533 5.96290 6.03032 6.26883 6.27762 6.44290 6.68262 6.86384 7.57091 7.66937 7.92683 8.32887 8.97653 9.56284 11.06007 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.029296 B = 0.003412 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.522487 B = 8203.557627 C = 8431.292137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.040 4.040 3 C -0.140 4.140 4 C -0.026 4.026 5 C -0.657 4.657 6 S 2.483 3.517 7 O -0.944 6.944 8 O -0.943 6.943 9 C -0.584 4.584 10 C -0.108 4.108 11 C 0.031 3.969 12 C -0.527 4.527 13 H 0.058 0.942 14 C 0.058 3.942 15 N -0.896 5.896 16 Si 0.895 3.105 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.021 4.021 21 C -0.111 4.111 22 C -0.118 4.118 23 H 0.077 0.923 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.131 0.869 27 H 0.142 0.858 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.021 0.979 33 H 0.021 0.979 34 H 0.262 0.738 35 H 0.142 0.858 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.934 -1.017 -10.521 22.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.040 4.040 3 C -0.159 4.159 4 C -0.045 4.045 5 C -0.743 4.743 6 S 2.666 3.334 7 O -0.941 6.941 8 O -0.941 6.941 9 C -0.716 4.716 10 C -0.147 4.147 11 C -0.008 4.008 12 C -0.565 4.565 13 H 0.076 0.924 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.722 3.278 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.040 4.040 21 C -0.112 4.112 22 C -0.175 4.175 23 H 0.096 0.904 24 H 0.089 0.911 25 H 0.093 0.907 26 H 0.148 0.852 27 H 0.160 0.840 28 H 0.150 0.850 29 H 0.149 0.851 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.072 0.928 35 H 0.159 0.841 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.454 -1.023 -11.095 22.419 hybrid contribution 0.296 0.088 0.868 0.921 sum -19.158 -0.935 -10.227 21.737 Atomic orbital electron populations 1.20983 0.90849 1.03321 1.02919 1.20072 0.96257 0.92832 0.94854 1.21144 0.94201 0.97789 1.02723 1.20960 0.94632 0.96853 0.92047 1.30786 1.26857 0.99203 1.17411 1.05913 0.73774 0.74689 0.79060 1.93536 1.81774 1.44247 1.74526 1.93537 1.81764 1.44669 1.74091 1.30279 1.08935 1.11680 1.20685 1.21572 0.86598 1.02250 1.04308 1.19070 0.96484 0.97838 0.87395 1.21216 0.91726 1.51198 0.92383 0.92362 1.25018 0.98362 0.95086 0.95887 1.69947 1.35217 1.50510 0.97781 0.86609 0.85430 0.78779 0.76934 1.20101 1.21263 1.20108 1.20866 0.93902 0.96946 0.92242 1.19883 0.93714 0.95320 1.02285 1.20884 1.00071 0.93755 1.02756 0.90414 0.91149 0.90689 0.85151 0.84037 0.85034 0.85052 0.91345 0.91337 0.96024 0.96031 0.92835 0.84064 0.90782 0.91038 0.91111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 9.60 36.01 0.35 -0.46 16 2 C -0.04 -0.39 5.88 -104.62 -0.62 -1.01 16 3 C -0.14 -1.44 9.70 -39.58 -0.38 -1.82 16 4 C -0.03 -0.32 9.47 -39.58 -0.37 -0.69 16 5 C -0.66 -8.75 5.66 -39.58 -0.22 -8.98 16 6 S 2.48 37.96 5.16 -107.50 -0.55 37.40 16 7 O -0.94 -16.70 17.13 -57.54 -0.99 -17.69 16 8 O -0.94 -16.70 17.13 -57.54 -0.99 -17.68 16 9 C -0.58 -9.02 5.98 37.16 0.22 -8.79 16 10 C -0.11 -2.17 5.16 -26.73 -0.14 -2.31 16 11 C 0.03 0.77 4.97 -27.89 -0.14 0.63 16 12 C -0.53 -14.79 9.11 -34.44 -0.31 -15.11 16 13 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.90 -26.54 13.29 55.43 0.74 -25.81 16 16 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 C -0.02 -0.26 9.13 -39.58 -0.36 -0.62 16 21 C -0.11 -1.17 5.88 -104.62 -0.62 -1.79 16 22 C -0.12 -0.90 9.60 36.01 0.35 -0.55 16 23 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 25 H 0.07 0.40 5.95 -51.93 -0.31 0.10 16 26 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 27 H 0.14 1.55 7.57 -52.49 -0.40 1.15 16 28 H 0.13 1.79 8.14 -51.92 -0.42 1.37 16 29 H 0.13 1.79 8.14 -51.92 -0.42 1.37 16 30 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.14 1.60 7.57 -52.49 -0.40 1.20 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.43 5.95 -51.93 -0.31 0.12 16 38 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 LS Contribution 331.62 15.07 5.00 5.00 Total: -1.00 -34.79 331.62 -9.76 -44.55 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -5.60 Total: -2.36 kcal Atomic # 6 Polarization: -37.60 SS G_CDS: -2.35 Total: -39.95 kcal Atomic # 7 Polarization: -26.54 SS G_CDS: 0.74 Total: -25.81 kcal Atomic # 8 Polarization: -33.40 SS G_CDS: -1.97 Total: -35.37 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 37.96 SS G_CDS: -0.55 Total: 37.40 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.79 -9.76 -44.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068557015.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.637 kcal (2) G-P(sol) polarization free energy of solvation -34.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds