Wall clock time and date at job start Tue Mar 31 2020 05:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38258 * 119.99997 * 2 1 4 4 C 1.38211 * 119.99784 * 180.23526 * 3 2 1 5 5 C 1.38256 * 120.00062 * 359.47854 * 4 3 2 6 6 S 1.76201 * 120.00171 * 180.27951 * 5 4 3 7 7 O 1.42095 * 104.28066 * 206.07180 * 6 5 4 8 8 O 1.42097 * 104.27597 * 333.93652 * 6 5 4 9 9 C 1.81401 * 104.44771 * 90.00255 * 6 5 4 10 10 C 1.53001 * 109.47270 * 180.02562 * 9 6 5 11 11 C 1.52999 * 109.47167 * 180.02562 * 10 9 6 12 12 C 1.50697 * 109.47049 * 179.97438 * 11 10 9 13 13 H 1.08005 * 120.00257 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00346 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99737 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00503 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47092 * 60.00125 * 16 14 12 18 18 H 1.48498 * 109.47232 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47045 * 300.00249 * 16 14 12 20 20 C 1.38214 * 120.00160 * 0.26318 * 5 4 3 21 21 C 1.38212 * 119.99856 * 179.71368 * 2 1 3 22 22 C 1.50706 * 120.00275 * 0.02562 * 21 2 1 23 23 H 1.09003 * 109.47135 * 270.28406 * 1 2 3 24 24 H 1.09000 * 109.46785 * 30.28531 * 1 2 3 25 25 H 1.09002 * 109.47199 * 150.28503 * 1 2 3 26 26 H 1.07998 * 119.99823 * 359.97438 * 3 2 1 27 27 H 1.08002 * 120.00200 * 179.76459 * 4 3 2 28 28 H 1.09002 * 109.47170 * 300.00193 * 9 6 5 29 29 H 1.09004 * 109.46881 * 60.00341 * 9 6 5 30 30 H 1.09002 * 109.47040 * 300.00099 * 10 9 6 31 31 H 1.08995 * 109.46927 * 60.00040 * 10 9 6 32 32 H 1.09002 * 109.46956 * 299.99826 * 11 10 9 33 33 H 1.08995 * 109.47429 * 60.00023 * 11 10 9 34 34 H 0.96996 * 120.00235 * 180.02562 * 15 14 12 35 35 H 1.07997 * 120.00449 * 180.02562 * 20 5 4 36 36 H 1.09004 * 109.46442 * 270.02096 * 22 21 2 37 37 H 1.09000 * 109.46849 * 30.01503 * 22 21 2 38 38 H 1.08993 * 109.47102 * 150.01800 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5805 1.1973 -0.0049 5 6 4.2717 0.0000 0.0011 6 16 6.0337 -0.0001 0.0022 7 8 6.3846 -1.2398 -0.5970 8 8 6.3846 1.2342 -0.6083 9 6 6.4852 0.0079 1.7592 10 6 8.0092 0.0092 1.8942 11 6 8.3899 0.0153 3.3761 12 6 9.8910 0.0158 3.5090 13 1 10.5115 0.0118 2.6250 14 6 10.4724 0.0215 4.7592 15 7 9.7169 0.0270 5.8357 16 14 12.3331 0.0229 4.9241 17 1 12.8875 1.2328 4.2652 18 1 12.7026 0.0287 6.3623 19 1 12.8884 -1.1922 4.2757 20 6 3.5807 -1.1970 0.0065 21 6 2.1981 -1.1970 0.0060 22 6 1.4446 -2.5021 0.0119 23 1 -0.3633 0.0051 1.0277 24 1 -0.3633 0.8874 -0.5183 25 1 -0.3634 -0.8925 -0.5094 26 1 1.6583 2.1326 -0.0004 27 1 4.1205 2.1326 -0.0088 28 1 6.0779 0.9001 2.2349 29 1 6.0779 -0.8799 2.2430 30 1 8.4168 -0.8828 1.4184 31 1 8.4160 0.8971 1.4105 32 1 7.9823 0.9070 3.8522 33 1 7.9831 -0.8729 3.8594 34 1 10.1258 0.0313 6.7152 35 1 4.1206 -2.1323 0.0116 36 1 1.2623 -2.8116 1.0411 37 1 0.4925 -2.3743 -0.5031 38 1 2.0340 -3.2642 -0.4977 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068557015.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:01 Heat of formation + Delta-G solvation = -93.199029 kcal Electronic energy + Delta-G solvation = -19385.143817 eV Core-core repulsion = 16318.062219 eV Total energy + Delta-G solvation = -3067.081597 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.59539 -38.19108 -37.05190 -36.47820 -34.56027 -34.17235 -33.20771 -29.68916 -28.72253 -27.59729 -25.61208 -23.34539 -22.73346 -22.00948 -19.84397 -18.64861 -18.44341 -17.39844 -17.11555 -16.51534 -16.47487 -16.27739 -15.68146 -15.25513 -15.18194 -14.47940 -14.21980 -14.11321 -13.63962 -13.62269 -13.52708 -13.19013 -13.11979 -13.09869 -13.05931 -12.95352 -12.73133 -12.65754 -12.61388 -12.15680 -12.03353 -11.74865 -11.63976 -11.37644 -10.99926 -10.56612 -10.05530 -9.76636 -8.22221 -6.33334 -0.95998 -0.19879 0.27146 1.40800 1.43446 1.51349 1.93016 2.35974 2.41044 2.87965 3.11234 3.12888 3.70084 3.74078 3.82696 3.89958 3.91603 4.21274 4.24062 4.38471 4.47554 4.63601 4.67780 4.71792 4.77690 4.90118 4.91951 4.92345 5.05370 5.08567 5.13494 5.18928 5.32362 5.45514 5.53209 5.62807 5.79557 5.90456 6.19660 6.82032 7.35912 8.89163 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.029296 B = 0.003412 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.522487 B = 8203.557627 C = 8431.292137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.039 4.039 3 C -0.142 4.142 4 C -0.044 4.044 5 C -0.665 4.665 6 S 2.505 3.495 7 O -0.972 6.972 8 O -0.971 6.971 9 C -0.583 4.583 10 C -0.109 4.109 11 C 0.031 3.969 12 C -0.553 4.553 13 H 0.061 0.939 14 C 0.003 3.997 15 N -0.930 5.930 16 Si 0.963 3.037 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.267 1.267 20 C -0.041 4.041 21 C -0.118 4.118 22 C -0.119 4.119 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.159 0.841 27 H 0.146 0.854 28 H 0.149 0.851 29 H 0.149 0.851 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.004 0.996 33 H 0.004 0.996 34 H 0.265 0.735 35 H 0.143 0.857 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.651 -1.027 -10.997 24.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.039 4.039 3 C -0.161 4.161 4 C -0.063 4.063 5 C -0.755 4.755 6 S 2.691 3.309 7 O -0.969 6.969 8 O -0.969 6.969 9 C -0.714 4.714 10 C -0.148 4.148 11 C -0.008 4.008 12 C -0.591 4.591 13 H 0.079 0.921 14 C -0.195 4.195 15 N -0.570 5.570 16 Si 0.787 3.213 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.192 1.192 20 C -0.060 4.060 21 C -0.119 4.119 22 C -0.175 4.175 23 H 0.108 0.892 24 H 0.102 0.898 25 H 0.106 0.894 26 H 0.176 0.824 27 H 0.164 0.836 28 H 0.167 0.833 29 H 0.167 0.833 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.023 0.977 33 H 0.023 0.977 34 H 0.074 0.926 35 H 0.161 0.839 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.127 -1.034 -11.578 24.113 hybrid contribution 0.672 0.091 1.009 1.216 sum -20.454 -0.943 -10.568 23.043 Atomic orbital electron populations 1.21084 0.88111 1.04719 1.04057 1.20557 0.98272 0.92235 0.92841 1.21523 0.93500 0.99419 1.01666 1.21191 0.95857 0.96570 0.92685 1.30260 1.24553 1.00433 1.20215 1.04884 0.74585 0.73364 0.78083 1.93490 1.83127 1.45291 1.75030 1.93492 1.83108 1.45665 1.74590 1.30210 1.05737 1.13558 1.21919 1.21389 0.90079 1.02472 1.00822 1.18968 0.95232 0.96075 0.90501 1.21716 0.93457 1.51174 0.92799 0.92061 1.25936 1.03504 0.94550 0.95542 1.70065 1.37324 1.51312 0.98300 0.85529 0.79314 0.79228 0.77188 1.19206 1.20628 1.19213 1.21077 0.95152 0.96653 0.93145 1.20271 0.93137 0.97138 1.01337 1.20975 1.00607 0.92217 1.03724 0.89167 0.89777 0.89367 0.82388 0.83581 0.83255 0.83336 0.91227 0.91192 0.97723 0.97743 0.92615 0.83924 0.89770 0.89014 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.60 71.24 0.68 -0.43 16 2 C -0.04 -0.65 5.88 -19.86 -0.12 -0.77 16 3 C -0.14 -2.61 9.70 22.27 0.22 -2.39 16 4 C -0.04 -1.03 9.47 22.27 0.21 -0.82 16 5 C -0.67 -17.49 5.66 22.27 0.13 -17.37 16 6 S 2.50 77.59 5.16 -56.49 -0.29 77.30 16 7 O -0.97 -35.07 17.13 -127.65 -2.19 -37.26 16 8 O -0.97 -34.91 17.13 -127.65 -2.19 -37.09 16 9 C -0.58 -18.15 5.98 71.98 0.43 -17.72 16 10 C -0.11 -4.46 5.16 30.59 0.16 -4.31 16 11 C 0.03 1.58 4.97 29.85 0.15 1.73 16 12 C -0.55 -31.61 9.11 25.60 0.23 -31.37 16 13 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 14 C 0.00 0.17 5.46 84.65 0.46 0.63 16 15 N -0.93 -55.95 13.29 21.45 0.28 -55.67 16 16 Si 0.96 44.28 29.54 68.60 2.03 46.31 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 C -0.04 -0.99 9.13 22.27 0.20 -0.79 16 21 C -0.12 -2.26 5.88 -19.86 -0.12 -2.37 16 22 C -0.12 -1.50 9.60 71.24 0.68 -0.82 16 23 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.08 0.57 8.09 -2.39 -0.02 0.55 16 25 H 0.09 0.58 5.95 -2.39 -0.01 0.57 16 26 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 27 H 0.15 3.13 7.57 -2.91 -0.02 3.11 16 28 H 0.15 4.07 8.14 -2.39 -0.02 4.05 16 29 H 0.15 4.06 8.14 -2.39 -0.02 4.04 16 30 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 31 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 32 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 34 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 35 H 0.14 3.23 7.57 -2.91 -0.02 3.21 16 36 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.09 0.77 5.95 -2.39 -0.01 0.76 16 38 H 0.07 0.89 8.08 -2.39 -0.02 0.87 16 Total: -1.00 -75.23 331.62 2.01 -73.23 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 1.04 Total: 9.98 kcal Atomic # 6 Polarization: -80.11 SS G_CDS: 3.32 Total: -76.79 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: 0.28 Total: -55.67 kcal Atomic # 8 Polarization: -69.98 SS G_CDS: -4.37 Total: -74.35 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: 77.59 SS G_CDS: -0.29 Total: 77.30 kcal Total: -75.23 2.01 -73.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068557015.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.974 kcal (2) G-P(sol) polarization free energy of solvation -75.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds