Wall clock time and date at job start Tue Mar 31 2020 05:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38255 * 120.00262 * 2 1 4 4 C 1.38213 * 120.00160 * 179.97438 * 3 2 1 5 5 C 1.38255 * 120.00003 * 0.02562 * 4 3 2 6 6 S 1.76198 * 120.00185 * 179.97438 * 5 4 3 7 7 O 1.42105 * 104.27617 * 358.92686 * 6 5 4 8 8 O 1.42101 * 104.27776 * 231.07137 * 6 5 4 9 9 C 1.81395 * 104.44778 * 114.99988 * 6 5 4 10 10 C 1.52999 * 109.46986 * 180.02562 * 9 6 5 11 11 C 1.53002 * 109.47213 * 180.02562 * 10 9 6 12 12 C 1.50706 * 109.47044 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00265 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99848 * 180.02562 * 12 11 10 15 15 N 1.31509 * 119.99718 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 119.99932 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47153 * 90.00505 * 16 14 12 18 18 H 1.48497 * 109.46916 * 210.00621 * 16 14 12 19 19 H 1.48506 * 109.47238 * 330.00226 * 16 14 12 20 20 C 1.38221 * 119.99712 * 0.25480 * 5 4 3 21 21 C 1.50701 * 119.99845 * 179.72809 * 20 5 4 22 22 C 1.38209 * 119.99675 * 180.02562 * 2 1 3 23 23 H 1.08994 * 109.47221 * 90.00140 * 1 2 3 24 24 H 1.08995 * 109.47714 * 210.00579 * 1 2 3 25 25 H 1.09007 * 109.47170 * 330.00553 * 1 2 3 26 26 H 1.08003 * 119.99677 * 359.97438 * 3 2 1 27 27 H 1.08000 * 119.99991 * 179.97438 * 4 3 2 28 28 H 1.09003 * 109.47393 * 299.99698 * 9 6 5 29 29 H 1.08994 * 109.47678 * 60.00314 * 9 6 5 30 30 H 1.09004 * 109.47080 * 299.99725 * 10 9 6 31 31 H 1.09005 * 109.47285 * 59.99790 * 10 9 6 32 32 H 1.09003 * 109.47218 * 299.99466 * 11 10 9 33 33 H 1.08995 * 109.47220 * 59.99596 * 11 10 9 34 34 H 0.97010 * 119.99674 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.47373 * 89.99521 * 21 20 5 36 36 H 1.08996 * 109.47161 * 209.99798 * 21 20 5 37 37 H 1.09001 * 109.46617 * 329.99467 * 21 20 5 38 38 H 1.08000 * 120.00233 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 0.0005 6 16 6.0337 -0.0001 0.0005 7 8 6.3842 1.3768 -0.0253 8 8 6.3841 -0.8655 -1.0708 9 6 6.4862 -0.7425 1.5925 10 6 8.0103 -0.7986 1.7142 11 6 8.3921 -1.4254 3.0567 12 6 9.8934 -1.4800 3.1768 13 1 10.5132 -1.1056 2.3755 14 6 10.4756 -2.0090 4.3092 15 7 11.7856 -2.0572 4.4137 16 14 9.4035 -2.6573 5.6948 17 1 9.1202 -4.0974 5.4691 18 1 10.1120 -2.4890 6.9889 19 1 8.1260 -1.9007 5.7277 20 6 3.5805 -1.1970 -0.0053 21 6 4.3340 -2.5022 -0.0115 22 6 2.1980 -1.1970 -0.0005 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3634 0.8901 0.5138 26 1 1.6583 2.1326 -0.0004 27 1 4.1205 2.1326 0.0001 28 1 6.0794 -0.1388 2.4038 29 1 6.0794 -1.7520 1.6516 30 1 8.4176 -1.4022 0.9030 31 1 8.4170 0.2110 1.6554 32 1 7.9849 -0.8222 3.8682 33 1 7.9855 -2.4350 3.1151 34 1 12.1952 -2.4290 5.2106 35 1 4.5156 -2.8218 1.0146 36 1 3.7450 -3.2593 -0.5290 37 1 5.2864 -2.3693 -0.5247 38 1 1.6579 -2.1323 -0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068557017.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:03 Heat of formation + Delta-G solvation = -64.419284 kcal Electronic energy + Delta-G solvation = -19768.093088 eV Core-core repulsion = 16702.259474 eV Total energy + Delta-G solvation = -3065.833614 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.77322 -37.06633 -35.82323 -34.88214 -33.97638 -32.38269 -32.15543 -28.50442 -27.74414 -27.14836 -23.67860 -22.59868 -21.41750 -20.36006 -18.95511 -17.53449 -16.92351 -16.46714 -15.90469 -15.31497 -15.27010 -14.62485 -14.51550 -14.26255 -14.19927 -13.59504 -13.46410 -12.96279 -12.89277 -12.52557 -12.37522 -12.31273 -12.17536 -12.01301 -11.86015 -11.62600 -11.46921 -11.38484 -10.97140 -10.95057 -10.57354 -10.09767 -9.87758 -9.65567 -9.30030 -9.22661 -9.00726 -8.59336 -6.08937 -4.08298 0.16952 0.64647 1.07493 2.99642 3.19899 3.26156 3.34077 3.35887 3.90370 4.23616 4.38694 4.39828 4.47242 4.60364 4.88470 4.95110 4.98531 5.07220 5.16552 5.18472 5.24948 5.33878 5.38211 5.45042 5.59167 5.68322 5.71928 5.90525 5.98946 6.09277 6.13462 6.18453 6.24336 6.64374 6.64659 7.11317 7.25304 7.70105 8.46914 8.95660 9.52099 11.04343 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.025228 B = 0.004062 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.618841 B = 6891.044821 C = 7346.223862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.034 4.034 3 C -0.151 4.151 4 C -0.015 4.015 5 C -0.666 4.666 6 S 2.487 3.513 7 O -0.943 6.943 8 O -0.938 6.938 9 C -0.595 4.595 10 C -0.099 4.099 11 C -0.005 4.005 12 C -0.527 4.527 13 H 0.075 0.925 14 C 0.068 3.932 15 N -0.900 5.900 16 Si 0.879 3.121 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.266 1.266 20 C 0.020 3.980 21 C -0.180 4.180 22 C -0.147 4.147 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.130 0.870 27 H 0.146 0.854 28 H 0.133 0.867 29 H 0.132 0.868 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.021 0.979 33 H 0.017 0.983 34 H 0.264 0.736 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.597 2.662 -7.850 25.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.034 4.034 3 C -0.170 4.170 4 C -0.033 4.033 5 C -0.752 4.752 6 S 2.669 3.331 7 O -0.940 6.940 8 O -0.935 6.935 9 C -0.726 4.726 10 C -0.138 4.138 11 C -0.043 4.043 12 C -0.565 4.565 13 H 0.093 0.907 14 C -0.134 4.134 15 N -0.539 5.539 16 Si 0.707 3.293 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.190 1.190 20 C 0.020 3.980 21 C -0.236 4.236 22 C -0.166 4.166 23 H 0.095 0.905 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.148 0.852 27 H 0.163 0.837 28 H 0.151 0.849 29 H 0.150 0.850 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.039 0.961 33 H 0.035 0.965 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.127 0.873 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -22.965 2.931 -8.425 24.637 hybrid contribution -1.255 -0.635 1.393 1.980 sum -24.221 2.296 -7.032 25.325 Atomic orbital electron populations 1.20917 0.90724 1.03324 1.02852 1.20217 0.96318 0.93317 0.93577 1.21144 0.94164 0.97864 1.03861 1.21006 0.94528 0.96975 0.90839 1.30538 1.26604 0.98816 1.19238 1.05784 0.73781 0.75315 0.78193 1.93523 1.81818 1.31546 1.87122 1.93504 1.81906 1.67438 1.50645 1.30397 1.09033 1.13495 1.19718 1.21382 0.86407 1.03095 1.02938 1.19542 0.97817 0.95526 0.91443 1.21127 0.89622 1.41175 1.04576 0.90665 1.25020 0.94857 0.95295 0.98213 1.69911 1.09271 1.45889 1.28786 0.86789 0.81074 0.79659 0.81828 1.20199 1.21264 1.19020 1.19592 0.94183 0.93581 0.90690 1.21754 1.03433 0.94174 1.04277 1.21042 0.93498 0.97952 1.04059 0.90487 0.91047 0.91009 0.85201 0.83666 0.84862 0.84954 0.90723 0.90722 0.96069 0.96504 0.92612 0.89332 0.89603 0.87318 0.85233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 10.01 36.01 0.36 -0.38 16 2 C -0.03 -0.32 5.88 -104.63 -0.62 -0.94 16 3 C -0.15 -1.52 9.70 -39.58 -0.38 -1.90 16 4 C -0.01 -0.18 9.50 -39.58 -0.38 -0.55 16 5 C -0.67 -8.69 5.58 -39.58 -0.22 -8.91 16 6 S 2.49 37.01 4.56 -107.50 -0.49 36.52 16 7 O -0.94 -16.29 16.74 -57.54 -0.96 -17.25 16 8 O -0.94 -15.93 15.34 -57.54 -0.88 -16.81 16 9 C -0.59 -8.56 5.78 37.16 0.21 -8.35 16 10 C -0.10 -1.89 5.16 -26.73 -0.14 -2.02 16 11 C 0.00 -0.11 4.04 -27.88 -0.11 -0.22 16 12 C -0.53 -14.81 9.66 -34.44 -0.33 -15.15 16 13 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 14 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 15 N -0.90 -27.53 13.96 55.43 0.77 -26.75 16 16 Si 0.88 21.19 27.47 -169.99 -4.67 16.52 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 20 C 0.02 0.24 5.87 -104.62 -0.61 -0.37 16 21 C -0.18 -1.89 8.48 36.01 0.31 -1.59 16 22 C -0.15 -1.48 9.36 -39.58 -0.37 -1.85 16 23 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 25 H 0.07 0.37 8.09 -51.92 -0.42 -0.05 16 26 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 27 H 0.15 1.63 7.21 -52.49 -0.38 1.26 16 28 H 0.13 1.66 8.14 -51.92 -0.42 1.24 16 29 H 0.13 1.60 6.04 -51.93 -0.31 1.29 16 30 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 31 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 33 H 0.02 0.37 7.57 -51.93 -0.39 -0.03 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.09 0.78 7.12 -51.93 -0.37 0.41 16 36 H 0.09 0.72 8.09 -51.93 -0.42 0.30 16 37 H 0.11 1.32 4.88 -51.93 -0.25 1.07 16 38 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 322.57 15.07 4.86 4.86 Total: -1.00 -34.73 322.57 -9.22 -43.95 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -5.46 Total: -0.67 kcal Atomic # 6 Polarization: -37.99 SS G_CDS: -2.38 Total: -40.37 kcal Atomic # 7 Polarization: -27.53 SS G_CDS: 0.77 Total: -26.75 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -1.85 Total: -34.06 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Atomic # 16 Polarization: 37.01 SS G_CDS: -0.49 Total: 36.52 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.73 -9.22 -43.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068557017.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.471 kcal (2) G-P(sol) polarization free energy of solvation -34.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds