Wall clock time and date at job start Tue Mar 31 2020 05:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38255 * 120.00262 * 2 1 4 4 C 1.38213 * 120.00160 * 179.97438 * 3 2 1 5 5 C 1.38255 * 120.00003 * 0.02562 * 4 3 2 6 6 S 1.76198 * 120.00185 * 179.97438 * 5 4 3 7 7 O 1.42105 * 104.27617 * 358.92686 * 6 5 4 8 8 O 1.42101 * 104.27776 * 231.07137 * 6 5 4 9 9 C 1.81395 * 104.44778 * 114.99988 * 6 5 4 10 10 C 1.52999 * 109.46986 * 180.02562 * 9 6 5 11 11 C 1.53002 * 109.47213 * 180.02562 * 10 9 6 12 12 C 1.50706 * 109.47044 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00265 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99848 * 180.02562 * 12 11 10 15 15 N 1.31509 * 119.99718 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 119.99932 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47153 * 90.00505 * 16 14 12 18 18 H 1.48497 * 109.46916 * 210.00621 * 16 14 12 19 19 H 1.48506 * 109.47238 * 330.00226 * 16 14 12 20 20 C 1.38221 * 119.99712 * 0.25480 * 5 4 3 21 21 C 1.50701 * 119.99845 * 179.72809 * 20 5 4 22 22 C 1.38209 * 119.99675 * 180.02562 * 2 1 3 23 23 H 1.08994 * 109.47221 * 90.00140 * 1 2 3 24 24 H 1.08995 * 109.47714 * 210.00579 * 1 2 3 25 25 H 1.09007 * 109.47170 * 330.00553 * 1 2 3 26 26 H 1.08003 * 119.99677 * 359.97438 * 3 2 1 27 27 H 1.08000 * 119.99991 * 179.97438 * 4 3 2 28 28 H 1.09003 * 109.47393 * 299.99698 * 9 6 5 29 29 H 1.08994 * 109.47678 * 60.00314 * 9 6 5 30 30 H 1.09004 * 109.47080 * 299.99725 * 10 9 6 31 31 H 1.09005 * 109.47285 * 59.99790 * 10 9 6 32 32 H 1.09003 * 109.47218 * 299.99466 * 11 10 9 33 33 H 1.08995 * 109.47220 * 59.99596 * 11 10 9 34 34 H 0.97010 * 119.99674 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.47373 * 89.99521 * 21 20 5 36 36 H 1.08996 * 109.47161 * 209.99798 * 21 20 5 37 37 H 1.09001 * 109.46617 * 329.99467 * 21 20 5 38 38 H 1.08000 * 120.00233 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 0.0005 6 16 6.0337 -0.0001 0.0005 7 8 6.3842 1.3768 -0.0253 8 8 6.3841 -0.8655 -1.0708 9 6 6.4862 -0.7425 1.5925 10 6 8.0103 -0.7986 1.7142 11 6 8.3921 -1.4254 3.0567 12 6 9.8934 -1.4800 3.1768 13 1 10.5132 -1.1056 2.3755 14 6 10.4756 -2.0090 4.3092 15 7 11.7856 -2.0572 4.4137 16 14 9.4035 -2.6573 5.6948 17 1 9.1202 -4.0974 5.4691 18 1 10.1120 -2.4890 6.9889 19 1 8.1260 -1.9007 5.7277 20 6 3.5805 -1.1970 -0.0053 21 6 4.3340 -2.5022 -0.0115 22 6 2.1980 -1.1970 -0.0005 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3634 0.8901 0.5138 26 1 1.6583 2.1326 -0.0004 27 1 4.1205 2.1326 0.0001 28 1 6.0794 -0.1388 2.4038 29 1 6.0794 -1.7520 1.6516 30 1 8.4176 -1.4022 0.9030 31 1 8.4170 0.2110 1.6554 32 1 7.9849 -0.8222 3.8682 33 1 7.9855 -2.4350 3.1151 34 1 12.1952 -2.4290 5.2106 35 1 4.5156 -2.8218 1.0146 36 1 3.7450 -3.2593 -0.5290 37 1 5.2864 -2.3693 -0.5247 38 1 1.6579 -2.1323 -0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068557017.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:03 Heat of formation + Delta-G solvation = -87.364128 kcal Electronic energy + Delta-G solvation = -19769.088051 eV Core-core repulsion = 16702.259474 eV Total energy + Delta-G solvation = -3066.828577 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.54513 -38.30143 -37.07778 -36.53861 -34.74687 -34.23376 -33.08246 -30.20336 -28.44335 -27.92238 -25.40042 -23.44349 -22.45863 -21.81830 -20.06474 -18.97584 -18.55055 -17.52622 -17.22098 -16.37969 -16.19960 -16.04253 -15.75791 -15.38102 -15.16300 -14.82455 -14.24924 -14.22734 -14.01155 -13.80977 -13.50340 -13.25033 -13.22697 -13.13285 -13.03874 -12.88084 -12.63929 -12.58477 -12.50745 -12.10868 -11.83777 -11.63144 -11.57332 -11.40207 -11.15975 -10.76237 -10.05450 -9.79567 -8.28685 -6.34612 -0.96710 -0.20242 0.28986 1.38032 1.40847 1.52306 1.91702 2.37245 2.37623 2.78918 3.06628 3.17383 3.63450 3.67729 3.79641 3.83921 3.90205 4.26266 4.30605 4.32086 4.48307 4.57557 4.65030 4.66998 4.69273 4.80099 4.81271 4.95585 4.97183 5.09024 5.15799 5.27151 5.31148 5.34682 5.46718 5.47929 5.63348 5.90111 6.26439 6.73743 7.29981 8.88351 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.025228 B = 0.004062 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.618841 B = 6891.044821 C = 7346.223862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.031 4.031 3 C -0.155 4.155 4 C -0.035 4.035 5 C -0.677 4.677 6 S 2.494 3.506 7 O -0.977 6.977 8 O -0.967 6.967 9 C -0.587 4.587 10 C -0.105 4.105 11 C -0.005 4.005 12 C -0.543 4.543 13 H 0.030 0.970 14 C 0.001 3.999 15 N -0.953 5.953 16 Si 0.954 3.046 17 H -0.263 1.263 18 H -0.287 1.287 19 H -0.238 1.238 20 C 0.009 3.991 21 C -0.188 4.188 22 C -0.152 4.152 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.155 0.845 27 H 0.142 0.858 28 H 0.158 0.842 29 H 0.161 0.839 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.033 0.967 33 H 0.035 0.965 34 H 0.267 0.733 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.962 1.734 -6.746 28.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.031 4.031 3 C -0.174 4.174 4 C -0.054 4.054 5 C -0.767 4.767 6 S 2.681 3.319 7 O -0.974 6.974 8 O -0.965 6.965 9 C -0.718 4.718 10 C -0.144 4.144 11 C -0.044 4.044 12 C -0.581 4.581 13 H 0.049 0.951 14 C -0.196 4.196 15 N -0.593 5.593 16 Si 0.776 3.224 17 H -0.188 1.188 18 H -0.212 1.212 19 H -0.161 1.161 20 C 0.008 3.992 21 C -0.244 4.244 22 C -0.170 4.170 23 H 0.107 0.893 24 H 0.103 0.897 25 H 0.102 0.898 26 H 0.173 0.827 27 H 0.160 0.840 28 H 0.176 0.824 29 H 0.178 0.822 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.106 0.894 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -27.303 2.017 -7.347 28.346 hybrid contribution 0.070 -0.309 0.955 1.007 sum -27.233 1.707 -6.391 28.025 Atomic orbital electron populations 1.21005 0.88095 1.04648 1.03929 1.20680 0.98233 0.92736 0.91476 1.21483 0.93351 0.99538 1.03040 1.21169 0.95772 0.96604 0.91820 1.30049 1.24322 1.00129 1.22153 1.05131 0.74745 0.74160 0.77850 1.93473 1.83172 1.33239 1.87550 1.93470 1.83200 1.67793 1.51996 1.30283 1.05478 1.15813 1.20267 1.21245 0.90013 1.02145 1.00950 1.19517 0.94090 0.97046 0.93739 1.21550 0.92503 1.40592 1.03491 0.95138 1.26108 0.96340 0.95593 1.01537 1.70087 1.11736 1.47524 1.29999 0.85604 0.79762 0.79689 0.77297 1.18754 1.21249 1.16141 1.19827 0.95221 0.93332 0.90799 1.21847 1.02691 0.94362 1.05477 1.21416 0.92858 0.99522 1.03216 0.89321 0.89708 0.89805 0.82713 0.84000 0.82416 0.82161 0.91338 0.91738 0.94893 0.94660 0.92441 0.87495 0.87533 0.89386 0.82532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 10.01 71.24 0.71 -0.23 16 2 C -0.03 -0.47 5.88 -19.87 -0.12 -0.59 16 3 C -0.16 -2.72 9.70 22.27 0.22 -2.50 16 4 C -0.03 -0.80 9.50 22.27 0.21 -0.59 16 5 C -0.68 -16.96 5.58 22.27 0.12 -16.83 16 6 S 2.49 74.75 4.56 -56.49 -0.26 74.50 16 7 O -0.98 -34.86 16.74 -127.65 -2.14 -37.00 16 8 O -0.97 -33.71 15.34 -127.65 -1.96 -35.67 16 9 C -0.59 -16.05 5.78 71.98 0.42 -15.64 16 10 C -0.10 -3.99 5.16 30.59 0.16 -3.83 16 11 C -0.01 -0.24 4.04 29.85 0.12 -0.12 16 12 C -0.54 -31.35 9.66 25.60 0.25 -31.10 16 13 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 14 C 0.00 0.05 5.47 84.66 0.46 0.51 16 15 N -0.95 -60.11 13.96 21.45 0.30 -59.81 16 16 Si 0.95 42.86 27.47 68.60 1.88 44.74 16 17 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 18 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 19 H -0.24 -9.59 6.54 99.48 0.65 -8.94 16 20 C 0.01 0.20 5.87 -19.86 -0.12 0.08 16 21 C -0.19 -3.51 8.48 71.24 0.60 -2.90 16 22 C -0.15 -2.53 9.36 22.27 0.21 -2.32 16 23 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 24 H 0.08 0.48 8.09 -2.39 -0.02 0.46 16 25 H 0.08 0.49 8.09 -2.38 -0.02 0.47 16 26 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 27 H 0.14 3.22 7.21 -2.91 -0.02 3.19 16 28 H 0.16 3.54 8.14 -2.39 -0.02 3.52 16 29 H 0.16 3.45 6.04 -2.39 -0.01 3.43 16 30 H 0.07 2.63 8.14 -2.39 -0.02 2.62 16 31 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 32 H 0.03 1.40 7.20 -2.39 -0.02 1.38 16 33 H 0.04 1.45 7.57 -2.39 -0.02 1.43 16 34 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 35 H 0.11 1.54 7.12 -2.39 -0.02 1.52 16 36 H 0.11 1.49 8.09 -2.39 -0.02 1.47 16 37 H 0.09 2.06 4.88 -2.39 -0.01 2.05 16 38 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -78.06 322.57 2.07 -75.99 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.99 Total: 13.31 kcal Atomic # 6 Polarization: -79.31 SS G_CDS: 3.25 Total: -76.06 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: 0.30 Total: -59.81 kcal Atomic # 8 Polarization: -68.57 SS G_CDS: -4.09 Total: -72.67 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.88 Total: 44.74 kcal Atomic # 16 Polarization: 74.75 SS G_CDS: -0.26 Total: 74.50 kcal Total: -78.06 2.07 -75.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068557017.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.378 kcal (2) G-P(sol) polarization free energy of solvation -78.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds