Wall clock time and date at job start Tue Mar 31 2020 05:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00266 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00082 * 359.50197 * 5 4 3 7 7 C 1.50698 * 120.00206 * 180.26181 * 6 5 4 8 8 S 1.81408 * 109.46853 * 270.21387 * 7 6 5 9 9 O 1.42094 * 108.57870 * 294.48382 * 8 7 6 10 10 O 1.42099 * 108.57569 * 65.51184 * 8 7 6 11 11 C 1.81402 * 101.91998 * 179.97438 * 8 7 6 12 12 C 1.52999 * 109.47014 * 179.97438 * 11 8 7 13 13 C 1.52998 * 109.47320 * 180.02562 * 12 11 8 14 14 C 1.50697 * 109.47400 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00021 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00096 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99912 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99795 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46775 * 60.00908 * 18 16 14 20 20 H 1.48508 * 109.46821 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47436 * 300.00375 * 18 16 14 22 22 C 1.38215 * 119.99989 * 180.02562 * 2 1 3 23 23 H 1.08994 * 109.47517 * 89.99651 * 1 2 3 24 24 H 1.08997 * 109.46988 * 210.00044 * 1 2 3 25 25 H 1.09009 * 109.46840 * 329.99292 * 1 2 3 26 26 H 1.07999 * 119.99759 * 0.02562 * 3 2 1 27 27 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 28 28 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 29 29 H 1.09005 * 109.47039 * 30.20591 * 7 6 5 30 30 H 1.08995 * 109.47567 * 150.21599 * 7 6 5 31 31 H 1.08992 * 109.47306 * 300.00327 * 11 8 7 32 32 H 1.09001 * 109.46879 * 60.00155 * 11 8 7 33 33 H 1.09004 * 109.47180 * 300.00178 * 12 11 8 34 34 H 1.09001 * 109.47018 * 60.00428 * 12 11 8 35 35 H 1.08998 * 109.47385 * 300.00332 * 13 12 11 36 36 H 1.09001 * 109.46858 * 60.00168 * 13 12 11 37 37 H 0.97000 * 119.99917 * 179.97438 * 17 16 14 38 38 H 1.08001 * 119.99700 * 359.96970 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 6 4.3341 -2.5021 -0.0005 8 16 4.6364 -3.0257 -1.7109 9 8 3.3872 -3.3134 -2.3238 10 8 5.5103 -2.0876 -2.3237 11 6 5.5362 -4.5827 -1.4726 12 6 5.8832 -5.1849 -2.8356 13 6 6.6416 -6.4985 -2.6347 14 6 6.9829 -7.0919 -3.9772 15 1 6.6888 -6.5829 -4.8831 16 6 7.6716 -8.2843 -4.0489 17 7 8.0302 -8.9039 -2.9457 18 14 8.0940 -9.0202 -5.7130 19 1 8.9436 -8.0689 -6.4736 20 1 8.8301 -10.2951 -5.5179 21 1 6.8438 -9.2819 -6.4703 22 6 2.1981 -1.1970 -0.0005 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5140 26 1 1.6583 2.1326 0.0004 27 1 4.1204 2.1326 0.0010 28 1 5.3517 -0.0001 -0.0091 29 1 5.2866 -2.3718 0.5133 30 1 3.7450 -3.2618 0.5132 31 1 6.4531 -4.3909 -0.9155 32 1 4.9120 -5.2814 -0.9154 33 1 4.9659 -5.3768 -3.3922 34 1 6.5072 -4.4864 -3.3931 35 1 7.5588 -6.3070 -2.0778 36 1 6.0172 -7.1968 -2.0773 37 1 8.5144 -9.7429 -2.9961 38 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070262992.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:05 Heat of formation + Delta-G solvation = -71.432932 kcal Electronic energy + Delta-G solvation = -19206.235652 eV Core-core repulsion = 16140.097904 eV Total energy + Delta-G solvation = -3066.137749 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.67902 -36.76038 -35.81534 -34.65360 -33.92659 -32.27342 -32.18632 -28.24904 -27.59712 -26.98342 -23.73011 -22.41529 -21.21641 -20.37003 -18.69993 -16.82430 -16.76969 -16.24846 -16.23215 -15.63665 -15.49305 -14.92793 -14.47925 -14.28258 -13.99129 -13.57901 -13.29239 -13.00395 -12.59058 -12.44774 -12.36347 -12.25621 -11.91965 -11.81362 -11.74134 -11.48554 -11.25579 -11.24614 -10.90953 -10.88772 -10.85073 -10.37762 -9.92426 -9.40426 -9.17392 -8.98578 -8.76721 -8.39820 -6.05152 -4.08097 0.00806 1.13608 1.16864 2.92545 3.33014 3.36594 3.40065 3.48268 3.73336 4.05716 4.29148 4.43390 4.52582 4.64440 4.84147 4.88436 5.04808 5.15531 5.20803 5.21081 5.26502 5.31338 5.37009 5.41725 5.56694 5.78976 5.88734 5.89304 6.20575 6.25877 6.30721 6.33556 6.47515 6.74255 6.88806 7.57152 7.67399 7.92958 8.33711 8.97944 9.56516 11.06110 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.043741 B = 0.003037 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.981560 B = 9217.393536 C = 9343.811205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.087 4.087 3 C -0.116 4.116 4 C -0.115 4.115 5 C -0.110 4.110 6 C -0.081 4.081 7 C -0.578 4.578 8 S 2.403 3.597 9 O -0.936 6.936 10 O -0.936 6.936 11 C -0.593 4.593 12 C -0.105 4.105 13 C 0.030 3.970 14 C -0.526 4.526 15 H 0.058 0.942 16 C 0.058 3.942 17 N -0.896 5.896 18 Si 0.895 3.105 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.105 4.105 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.124 0.876 27 H 0.127 0.873 28 H 0.130 0.870 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.021 0.979 36 H 0.021 0.979 37 H 0.262 0.738 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.511 18.086 10.657 23.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.087 4.087 3 C -0.134 4.134 4 C -0.133 4.133 5 C -0.129 4.129 6 C -0.083 4.083 7 C -0.703 4.703 8 S 2.587 3.413 9 O -0.934 6.934 10 O -0.934 6.934 11 C -0.724 4.724 12 C -0.144 4.144 13 C -0.008 4.008 14 C -0.565 4.565 15 H 0.076 0.924 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.722 3.278 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.124 4.124 23 H 0.092 0.908 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.142 0.858 27 H 0.145 0.855 28 H 0.148 0.852 29 H 0.159 0.841 30 H 0.159 0.841 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.072 0.928 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.675 18.359 9.959 23.928 hybrid contribution 0.624 -0.944 0.051 1.132 sum -11.052 17.415 10.010 22.927 Atomic orbital electron populations 1.20812 0.90818 1.02828 1.02733 1.19927 0.96373 0.92899 0.99482 1.21120 0.94326 0.97608 1.00391 1.21144 0.94303 0.97979 0.99885 1.21170 1.00503 0.91788 0.99417 1.18948 0.93575 0.92404 1.03345 1.29470 1.09594 1.04308 1.26908 1.08722 0.76561 0.78395 0.77583 1.93556 1.42485 1.84961 1.72354 1.93557 1.66732 1.60710 1.72361 1.30325 1.13675 1.18668 1.09716 1.21524 1.01895 1.01115 0.89886 1.19079 0.94923 0.89322 0.97499 1.21223 1.36192 1.06394 0.92654 0.92388 1.25018 0.95705 0.96951 0.96690 1.69946 1.39438 1.17143 1.27002 0.86608 0.78648 0.78377 0.84122 1.20100 1.21246 1.20102 1.21059 0.93097 0.98498 0.99735 0.90793 0.91322 0.91478 0.85783 0.85472 0.85166 0.84105 0.84144 0.85327 0.85340 0.91412 0.91411 0.96106 0.96111 0.92841 0.85190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 10.01 36.01 0.36 -0.50 16 2 C -0.09 -0.88 5.88 -104.62 -0.62 -1.50 16 3 C -0.12 -1.10 9.70 -39.58 -0.38 -1.48 16 4 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 5 C -0.11 -1.24 9.70 -39.58 -0.38 -1.62 16 6 C -0.08 -0.97 5.14 -104.63 -0.54 -1.50 16 7 C -0.58 -5.87 5.93 36.00 0.21 -5.65 16 8 S 2.40 34.72 4.70 -107.50 -0.51 34.22 16 9 O -0.94 -16.42 18.10 -57.83 -1.05 -17.47 16 10 O -0.94 -16.43 18.10 -57.83 -1.05 -17.48 16 11 C -0.59 -8.85 5.81 37.16 0.22 -8.63 16 12 C -0.11 -2.16 5.16 -26.73 -0.14 -2.30 16 13 C 0.03 0.76 4.97 -27.89 -0.14 0.63 16 14 C -0.53 -14.94 9.11 -34.44 -0.31 -15.25 16 15 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 17 N -0.90 -26.66 13.29 55.43 0.74 -25.93 16 18 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C -0.10 -1.20 9.36 -39.58 -0.37 -1.57 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 25 H 0.07 0.39 8.09 -51.92 -0.42 -0.03 16 26 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 27 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 28 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 29 H 0.14 1.05 8.09 -51.92 -0.42 0.63 16 30 H 0.14 1.06 8.09 -51.93 -0.42 0.64 16 31 H 0.13 1.63 8.14 -51.93 -0.42 1.21 16 32 H 0.13 1.63 8.14 -51.92 -0.42 1.21 16 33 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 38 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 338.94 15.07 5.11 5.11 Total: -1.00 -35.93 338.94 -10.23 -46.16 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -5.87 Total: -1.92 kcal Atomic # 6 Polarization: -36.77 SS G_CDS: -2.59 Total: -39.36 kcal Atomic # 7 Polarization: -26.66 SS G_CDS: 0.74 Total: -25.93 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -2.09 Total: -34.95 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 34.72 SS G_CDS: -0.51 Total: 34.22 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.93 -10.23 -46.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070262992.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.269 kcal (2) G-P(sol) polarization free energy of solvation -35.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds