Wall clock time and date at job start Tue Mar 31 2020 05:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99645 * 2 1 4 4 H 1.48503 * 109.47278 * 269.99813 * 3 2 1 5 5 H 1.48502 * 109.46981 * 29.99501 * 3 2 1 6 6 H 1.48498 * 109.47192 * 149.99695 * 3 2 1 7 7 C 1.37875 * 120.00548 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99817 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99915 * 180.02562 * 7 2 1 10 10 N 1.46906 * 109.46965 * 180.02562 * 9 7 2 11 11 C 1.46961 * 110.99734 * 293.80177 * 10 9 7 12 12 C 1.53049 * 109.36292 * 176.81247 * 11 10 9 13 13 N 1.46955 * 109.36716 * 58.39846 * 12 11 10 14 14 C 1.39115 * 111.00434 * 176.81424 * 13 12 11 15 15 C 1.39501 * 120.13634 * 303.52427 * 14 13 12 16 16 C 1.38522 * 117.91117 * 179.73329 * 15 14 13 17 17 C 1.38959 * 118.02582 * 0.53020 * 16 15 14 18 18 Cl 1.73599 * 120.01371 * 179.74509 * 17 16 15 19 19 N 1.31882 * 119.98072 * 359.72377 * 17 16 15 20 20 N 1.28345 * 122.26800 * 0.02562 * 19 17 16 21 21 C 1.46961 * 110.88206 * 300.68030 * 13 12 11 22 22 C 1.46952 * 110.99889 * 170.00017 * 10 9 7 23 23 H 0.96999 * 120.00406 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47133 * 60.00399 * 9 7 2 25 25 H 1.08996 * 109.47320 * 300.00139 * 9 7 2 26 26 H 1.09003 * 109.48904 * 296.77641 * 11 10 9 27 27 H 1.09002 * 109.49205 * 56.84173 * 11 10 9 28 28 H 1.09008 * 109.48964 * 298.43140 * 12 11 10 29 29 H 1.09002 * 109.50883 * 178.37660 * 12 11 10 30 30 H 1.07999 * 121.04291 * 359.97438 * 15 14 13 31 31 H 1.08002 * 120.99098 * 180.22587 * 16 15 14 32 32 H 1.09003 * 109.48904 * 299.35325 * 21 13 12 33 33 H 1.08997 * 109.51213 * 179.29611 * 21 13 12 34 34 H 1.08999 * 109.49234 * 303.15264 * 22 10 9 35 35 H 1.08996 * 109.49284 * 63.22180 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4463 2.6527 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1294 0.0005 9 6 3.5116 -1.1938 0.0011 10 7 4.0014 -2.5788 0.0010 11 6 3.6545 -3.2602 1.2560 12 6 4.1110 -4.7192 1.1843 13 7 5.5604 -4.7653 0.9466 14 6 6.0243 -6.0768 0.9465 15 6 5.8034 -6.8980 2.0523 16 6 6.2803 -8.1975 2.0006 17 6 6.9583 -8.5991 0.8561 18 17 7.5836 -10.2143 0.7390 19 7 7.1264 -7.7529 -0.1414 20 7 6.6825 -6.5493 -0.1011 21 6 5.9074 -4.0839 -0.3084 22 6 5.4509 -2.6248 -0.2367 23 1 -0.4851 0.8400 -0.0004 24 1 3.8746 -0.6798 0.8911 25 1 3.8753 -0.6801 -0.8888 26 1 4.1526 -2.7639 2.0890 27 1 2.5751 -3.2236 1.4034 28 1 3.5925 -5.2228 0.3683 29 1 3.8807 -5.2194 2.1250 30 1 5.2738 -6.5331 2.9200 31 1 6.1338 -8.8769 2.8273 32 1 5.4093 -4.5802 -1.1414 33 1 6.9867 -4.1204 -0.4562 34 1 5.6812 -2.1250 -1.1776 35 1 5.9694 -2.1213 0.5792 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082060786.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:47 Heat of formation + Delta-G solvation = 79.687608 kcal Electronic energy + Delta-G solvation = -19500.195427 eV Core-core repulsion = 16367.319458 eV Total energy + Delta-G solvation = -3132.875969 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.50265 -39.03427 -37.11253 -35.69294 -33.54584 -32.64405 -31.24291 -30.80223 -28.40827 -25.74634 -25.21424 -23.39012 -22.93535 -21.26250 -19.65636 -18.11223 -17.69227 -17.16180 -16.77142 -15.76434 -15.05756 -14.66431 -14.53480 -14.36020 -14.20974 -14.04860 -13.65594 -13.30878 -12.48859 -12.33193 -12.22505 -11.86723 -11.74852 -11.61029 -11.18227 -11.02805 -10.90252 -10.77679 -10.54790 -10.28256 -10.26398 -9.93151 -9.82566 -9.34998 -8.63327 -8.51329 -7.52620 -6.11708 -4.10008 0.43942 0.51644 1.37708 3.02112 3.24562 3.32358 3.33743 3.35389 3.97693 4.19512 4.36085 4.36891 4.49187 4.59515 4.88632 5.16101 5.19270 5.22219 5.27559 5.46570 5.50543 5.54476 5.60884 5.75084 5.98977 6.16537 6.28701 6.41101 6.57579 6.77361 6.78897 6.89446 7.49380 7.76073 7.90077 8.35703 8.56501 8.95036 9.49641 11.01137 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.052257 B = 0.003170 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.680689 B = 8831.674524 C = 9073.228316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.875 3.125 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.513 4.513 8 H 0.081 0.919 9 C 0.163 3.837 10 N -0.530 5.530 11 C 0.065 3.935 12 C 0.060 3.940 13 N -0.468 5.468 14 C 0.267 3.733 15 C -0.120 4.120 16 C -0.084 4.084 17 C 0.080 3.920 18 Cl -0.016 7.016 19 N -0.206 5.206 20 N -0.263 5.263 21 C 0.066 3.934 22 C 0.050 3.950 23 H 0.264 0.736 24 H -0.009 1.009 25 H 0.026 0.974 26 H 0.035 0.965 27 H 0.103 0.897 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.162 0.838 31 H 0.160 0.840 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.260 -15.915 5.936 21.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.132 4.132 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.551 4.551 8 H 0.099 0.901 9 C 0.037 3.963 10 N -0.255 5.255 11 C -0.063 4.063 12 C -0.065 4.065 13 N -0.185 5.185 14 C 0.028 3.972 15 C -0.152 4.152 16 C -0.114 4.114 17 C -0.095 4.095 18 Cl 0.011 6.989 19 N -0.050 5.050 20 N -0.112 5.112 21 C -0.060 4.060 22 C -0.079 4.079 23 H 0.074 0.926 24 H 0.009 0.991 25 H 0.044 0.956 26 H 0.053 0.947 27 H 0.121 0.879 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.179 0.821 31 H 0.178 0.822 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 13.705 -15.541 4.406 21.184 hybrid contribution 0.025 0.630 1.557 1.680 sum 13.730 -14.910 5.962 21.128 Atomic orbital electron populations 1.69885 1.06141 1.26957 1.50780 1.24894 0.94735 0.98896 0.94711 0.86866 0.80281 0.83971 0.78668 1.20087 1.21180 1.19246 1.21001 0.88611 0.94731 1.50753 0.90147 1.20168 0.97140 0.83646 0.95353 1.62145 1.10370 1.19586 1.33389 1.22080 1.02541 0.90408 0.91286 1.22561 0.82170 1.00071 1.01719 1.59283 1.15968 1.07547 1.35740 1.21756 0.93922 0.90566 0.90943 1.22056 1.00815 0.92797 0.99484 1.22087 0.94839 0.96592 0.97844 1.23294 1.00743 0.90818 0.94610 1.98408 1.85618 1.16636 1.98191 1.72701 1.12430 0.96974 1.22857 1.73398 1.12297 1.04933 1.20540 1.22231 1.01444 0.94269 0.88102 1.22220 0.90116 0.94302 1.01265 0.92579 0.99114 0.95554 0.94679 0.87926 0.92181 0.89823 0.82070 0.82236 0.91727 0.89523 0.89973 0.94805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.82 13.96 55.43 0.77 -26.04 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 3 Si 0.87 20.91 27.47 -169.99 -4.67 16.24 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 7 C -0.51 -13.97 9.03 -34.44 -0.31 -14.28 16 8 H 0.08 2.37 7.37 -52.48 -0.39 1.98 16 9 C 0.16 3.78 3.79 -4.97 -0.02 3.76 16 10 N -0.53 -10.46 4.70 -235.91 -1.11 -11.57 16 11 C 0.07 1.13 5.43 -3.77 -0.02 1.11 16 12 C 0.06 0.83 5.38 -3.77 -0.02 0.81 16 13 N -0.47 -6.45 4.74 -172.86 -0.82 -7.27 16 14 C 0.27 3.45 6.47 -154.74 -1.00 2.45 16 15 C -0.12 -1.16 9.32 -39.01 -0.36 -1.52 16 16 C -0.08 -0.73 9.99 -39.21 -0.39 -1.12 16 17 C 0.08 0.89 7.37 -17.26 -0.13 0.76 16 18 Cl -0.02 -0.15 29.13 -51.86 -1.51 -1.66 16 19 N -0.21 -2.88 11.48 32.90 0.38 -2.51 16 20 N -0.26 -3.84 9.90 31.24 0.31 -3.53 16 21 C 0.07 0.97 4.80 -3.76 -0.02 0.95 16 22 C 0.05 0.82 5.61 -3.77 -0.02 0.80 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 24 H -0.01 -0.21 7.18 -51.93 -0.37 -0.58 16 25 H 0.03 0.62 7.45 -51.93 -0.39 0.23 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.10 1.96 6.79 -51.93 -0.35 1.61 16 28 H 0.06 0.89 8.14 -51.92 -0.42 0.46 16 29 H 0.08 0.90 6.86 -51.93 -0.36 0.54 16 30 H 0.16 1.14 7.26 -52.49 -0.38 0.76 16 31 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.06 1.02 8.06 -51.93 -0.42 0.60 16 33 H 0.09 1.20 7.84 -51.93 -0.41 0.79 16 34 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 35 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 302.47 15.07 4.56 4.56 Total: -1.00 -30.66 302.47 -8.82 -39.48 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: -4.34 Total: -3.27 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -2.39 Total: -4.43 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: -0.47 Total: -50.92 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.51 Total: -1.66 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.66 -8.82 -39.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082060786.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.164 kcal (2) G-P(sol) polarization free energy of solvation -30.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds