Wall clock time and date at job start Tue Mar 31 2020 05:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38237 * 120.00001 * 59.72567 * 4 2 1 6 6 C 1.38237 * 120.00164 * 179.76476 * 5 4 2 7 7 C 1.38232 * 119.99658 * 0.48819 * 6 5 4 8 8 S 1.76206 * 119.99908 * 179.76895 * 7 6 5 9 9 O 1.42095 * 104.27613 * 26.08700 * 8 7 6 10 10 O 1.42098 * 104.27729 * 153.94988 * 8 7 6 11 11 C 1.81398 * 104.44674 * 270.01641 * 8 7 6 12 12 C 1.53001 * 109.47054 * 179.97438 * 11 8 7 13 13 C 1.50700 * 109.47172 * 179.97438 * 12 11 8 14 14 H 1.07997 * 120.00064 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00053 * 179.97438 * 13 12 11 16 16 N 1.31519 * 120.00041 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00141 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46817 * 60.00179 * 17 15 13 19 19 H 1.48492 * 109.47509 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47099 * 300.00247 * 17 15 13 21 21 C 1.38238 * 120.00261 * 359.78461 * 7 6 5 22 22 C 1.38233 * 119.99957 * 239.99778 * 4 2 1 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 27 27 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 28 28 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 30 30 H 1.08007 * 119.99774 * 359.97438 * 5 4 2 31 31 H 1.08001 * 120.00084 * 180.24925 * 6 5 4 32 32 H 1.08999 * 109.47395 * 299.99889 * 11 8 7 33 33 H 1.08998 * 109.47061 * 60.00166 * 11 8 7 34 34 H 1.08999 * 109.47042 * 300.00244 * 12 11 8 35 35 H 1.08998 * 109.46938 * 60.00229 * 12 11 8 36 36 H 0.96997 * 119.99632 * 179.97438 * 16 15 13 37 37 H 1.08003 * 120.00252 * 179.97438 * 21 7 6 38 38 H 1.07991 * 120.00142 * 0.02562 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6937 -0.2414 -2.4860 6 6 2.1584 -0.8901 -3.6147 7 6 2.9535 -2.0138 -3.4879 8 16 3.5410 -2.8443 -4.9267 9 8 3.5687 -1.8354 -5.9269 10 8 4.7350 -3.4848 -4.4986 11 6 2.2576 -4.0719 -5.2962 12 6 2.6560 -4.8673 -6.5411 13 6 1.5902 -5.8875 -6.8478 14 1 0.7159 -5.9611 -6.2181 15 6 1.7307 -6.7264 -7.9329 16 7 2.7952 -6.6366 -8.7000 17 14 0.4092 -7.9907 -8.3135 18 1 -0.8814 -7.2987 -8.5597 19 1 0.7959 -8.7627 -9.5215 20 1 0.2629 -8.9160 -7.1612 21 6 3.2875 -2.4861 -2.2324 22 6 2.8271 -1.8343 -1.1037 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 1.6767 1.9564 0.8899 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.0688 0.6339 -2.5850 31 1 1.8972 -0.5213 -4.5956 32 1 2.1496 -4.7506 -4.4502 33 1 1.3105 -3.5640 -5.4778 34 1 2.7638 -4.1883 -7.3869 35 1 3.6033 -5.3752 -6.3599 36 1 2.8942 -7.2270 -9.4632 37 1 3.9084 -3.3643 -2.1333 38 1 3.0877 -2.2035 -0.1228 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084240427.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:38 Heat of formation + Delta-G solvation = -71.231937 kcal Electronic energy + Delta-G solvation = -19518.996870 eV Core-core repulsion = 16452.867837 eV Total energy + Delta-G solvation = -3066.129033 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.70546 -36.55770 -35.73829 -35.34655 -33.90001 -31.17930 -31.12626 -30.14733 -27.47916 -25.61927 -23.96108 -22.89203 -21.56637 -20.37418 -18.65428 -17.67029 -16.59267 -16.13348 -15.57807 -15.27163 -14.99558 -14.67473 -14.51129 -14.13902 -13.90300 -13.51892 -13.38860 -13.20507 -12.80841 -12.53346 -12.39105 -11.75942 -11.68044 -11.53776 -11.51395 -11.45038 -11.32669 -11.06640 -10.96954 -10.93475 -10.51253 -10.37891 -10.35292 -9.71652 -9.30714 -9.07786 -9.00936 -8.49951 -6.12378 -4.18232 0.54560 0.88157 1.26235 3.27715 3.32538 3.33910 3.34343 3.49053 4.31324 4.32650 4.42465 4.42673 4.59081 4.84017 4.85512 4.93007 5.09303 5.22734 5.25508 5.28850 5.31373 5.48909 5.52049 5.62842 5.67273 5.69401 5.71853 5.86353 5.89576 5.92646 6.12919 6.13808 6.37695 6.46016 6.79474 7.30012 7.35777 7.80381 8.16526 8.84954 9.46465 10.98567 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.026652 B = 0.003767 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.336425 B = 7431.846597 C = 7968.241814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.063 4.063 3 C -0.145 4.145 4 C -0.033 4.033 5 C -0.139 4.139 6 C -0.022 4.022 7 C -0.658 4.658 8 S 2.475 3.525 9 O -0.948 6.948 10 O -0.948 6.948 11 C -0.564 4.564 12 C 0.026 3.974 13 C -0.522 4.522 14 H 0.062 0.938 15 C 0.059 3.941 16 N -0.890 5.890 17 Si 0.901 3.099 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 C -0.021 4.021 22 C -0.142 4.142 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.128 0.872 31 H 0.141 0.859 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.266 0.734 37 H 0.142 0.858 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.780 13.174 17.457 22.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.081 4.081 3 C -0.202 4.202 4 C -0.033 4.033 5 C -0.158 4.158 6 C -0.041 4.041 7 C -0.742 4.742 8 S 2.657 3.343 9 O -0.945 6.945 10 O -0.945 6.945 11 C -0.698 4.698 12 C -0.013 4.013 13 C -0.561 4.561 14 H 0.080 0.920 15 C -0.144 4.144 16 N -0.528 5.528 17 Si 0.728 3.272 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.040 4.040 22 C -0.161 4.161 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.099 0.901 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.146 0.854 31 H 0.159 0.841 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.159 0.841 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.897 13.335 16.916 21.734 hybrid contribution -1.371 -0.735 0.315 1.587 sum -4.268 12.599 17.231 21.769 Atomic orbital electron populations 1.21867 0.93883 1.02341 1.02164 1.20248 0.96341 0.96284 0.95264 1.21865 1.01411 0.94803 1.02163 1.20158 0.94222 0.94086 0.94873 1.21072 1.01813 1.01023 0.91897 1.20987 0.91494 0.91812 0.99790 1.30980 1.14115 1.11063 1.18059 1.06246 0.77724 0.76421 0.73859 1.93514 1.87063 1.56963 1.56945 1.93514 1.42728 1.76780 1.81469 1.30195 1.15058 1.13771 1.10752 1.19028 0.98708 0.95127 0.88416 1.20961 1.05519 1.17510 1.12132 0.92001 1.25062 0.95930 0.97504 0.95926 1.69946 1.27446 1.38669 1.16729 0.86520 0.81685 0.81157 0.77857 1.20061 1.21071 1.20066 1.20993 0.94197 0.97937 0.90884 1.21164 0.99674 0.96405 0.98835 0.92294 0.92184 0.92196 0.90133 0.92161 0.92384 0.92218 0.85399 0.84088 0.85836 0.85841 0.94588 0.94592 0.92440 0.84068 0.85379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.00 37.16 0.33 -0.69 16 2 C -0.06 -0.49 3.09 -91.77 -0.28 -0.78 16 3 C -0.15 -1.02 9.01 37.16 0.33 -0.69 16 4 C -0.03 -0.35 4.78 -104.62 -0.50 -0.85 16 5 C -0.14 -1.58 8.71 -39.58 -0.34 -1.92 16 6 C -0.02 -0.30 9.47 -39.58 -0.37 -0.67 16 7 C -0.66 -9.88 5.66 -39.58 -0.22 -10.10 16 8 S 2.47 45.04 5.16 -107.50 -0.55 44.48 16 9 O -0.95 -19.59 17.13 -57.54 -0.99 -20.57 16 10 O -0.95 -19.60 17.13 -57.54 -0.99 -20.58 16 11 C -0.56 -10.70 5.92 37.16 0.22 -10.48 16 12 C 0.03 0.65 4.98 -27.88 -0.14 0.52 16 13 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 14 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 17 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 C -0.02 -0.29 9.47 -39.58 -0.37 -0.67 16 22 C -0.14 -1.61 9.67 -39.58 -0.38 -1.99 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.42 7.37 -51.93 -0.38 0.04 16 26 H 0.08 0.56 7.88 -51.93 -0.41 0.16 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.42 7.41 -51.93 -0.38 0.03 16 30 H 0.13 1.14 7.10 -52.48 -0.37 0.76 16 31 H 0.14 1.77 7.57 -52.49 -0.40 1.38 16 32 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 33 H 0.12 2.08 8.14 -51.92 -0.42 1.65 16 34 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.14 1.78 7.57 -52.48 -0.40 1.38 16 38 H 0.13 1.12 7.95 -52.49 -0.42 0.70 16 LS Contribution 331.93 15.07 5.00 5.00 Total: -1.00 -34.02 331.93 -9.64 -43.66 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -5.68 Total: -1.07 kcal Atomic # 6 Polarization: -39.24 SS G_CDS: -2.15 Total: -41.39 kcal Atomic # 7 Polarization: -26.31 SS G_CDS: 0.74 Total: -25.57 kcal Atomic # 8 Polarization: -39.19 SS G_CDS: -1.97 Total: -41.16 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 45.04 SS G_CDS: -0.55 Total: 44.48 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.02 -9.64 -43.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084240427.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.573 kcal (2) G-P(sol) polarization free energy of solvation -34.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds