Wall clock time and date at job start Tue Mar 31 2020 05:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00275 * 2 1 4 4 H 1.48504 * 109.46914 * 264.43065 * 3 2 1 5 5 H 1.48496 * 109.47225 * 24.42998 * 3 2 1 6 6 H 1.48503 * 109.47164 * 144.43309 * 3 2 1 7 7 C 1.37879 * 119.99883 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99757 * 352.10689 * 7 2 1 9 9 C 1.50702 * 120.00030 * 172.10449 * 7 2 1 10 10 C 1.53002 * 115.54688 * 87.39169 * 9 7 2 11 11 O 1.45195 * 109.47136 * 65.38827 * 10 9 7 12 12 C 1.34803 * 116.99416 * 175.83755 * 11 10 9 13 13 O 1.21532 * 120.00411 * 3.17982 * 12 11 10 14 14 C 1.46957 * 119.99541 * 183.18070 * 12 11 10 15 15 C 1.33081 * 119.99836 * 173.44284 * 14 12 11 16 16 C 1.50656 * 119.84246 * 336.68446 * 15 14 12 17 17 C 1.53684 * 109.16033 * 117.47858 * 16 15 14 18 18 S 1.81616 * 108.98062 * 57.98123 * 17 16 15 19 19 C 1.81617 * 102.56548 * 303.39068 * 18 17 16 20 20 C 1.50661 * 119.83856 * 156.94953 * 15 14 12 21 21 C 1.52998 * 117.49966 * 233.05698 * 9 7 2 22 22 C 1.53000 * 117.49966 * 301.71626 * 9 7 2 23 23 H 0.97003 * 119.99374 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46731 * 305.37984 * 10 9 7 25 25 H 1.09003 * 109.46696 * 185.39178 * 10 9 7 26 26 H 1.07995 * 119.99841 * 353.17395 * 14 12 11 27 27 H 1.09001 * 109.48273 * 237.48554 * 16 15 14 28 28 H 1.09007 * 109.47747 * 357.50935 * 16 15 14 29 29 H 1.09001 * 109.66943 * 298.07711 * 17 16 15 30 30 H 1.09001 * 109.54969 * 177.82114 * 17 16 15 31 31 H 1.09000 * 109.54139 * 296.62316 * 19 18 17 32 32 H 1.09000 * 109.61958 * 176.40522 * 19 18 17 33 33 H 1.08995 * 109.47237 * 2.49512 * 20 15 14 34 34 H 1.08997 * 109.47418 * 122.50813 * 20 15 14 35 35 H 1.08994 * 117.50098 * 215.00502 * 21 9 7 36 36 H 1.09005 * 117.49726 * 0.02785 * 21 9 7 37 37 H 1.08998 * 117.49593 * 359.97438 * 22 9 7 38 38 H 1.09005 * 117.49487 * 144.96966 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6144 1.9784 -1.3935 5 1 1.3929 2.6838 0.5790 6 1 3.4830 1.4769 0.8144 7 6 2.0045 -1.1941 0.0005 8 1 1.4721 -2.1248 0.1294 9 6 3.5008 -1.2004 -0.1787 10 6 4.3197 -1.0452 1.1043 11 8 4.1091 -2.2021 1.9559 12 6 4.8291 -2.2635 3.0938 13 8 5.5685 -1.3473 3.3954 14 6 4.7201 -3.4385 3.9698 15 6 5.5244 -3.5601 5.0230 16 6 6.8444 -2.8344 5.0461 17 6 6.8482 -1.8312 6.2103 18 16 6.5531 -2.7267 7.7626 19 6 4.9739 -3.5643 7.4414 20 6 5.1131 -4.4278 6.1840 21 6 4.0765 -2.0920 -1.2807 22 6 4.0620 -0.5714 -1.4556 23 1 -0.4849 0.8401 -0.0004 24 1 4.0036 -0.1443 1.6303 25 1 5.3775 -0.9667 0.8529 26 1 3.9843 -4.2010 3.7612 27 1 7.6524 -3.5537 5.1799 28 1 6.9833 -2.3026 4.1047 29 1 6.0612 -1.0922 6.0605 30 1 7.8150 -1.3299 6.2567 31 1 4.1914 -2.8210 7.2885 32 1 4.7154 -4.1963 8.2910 33 1 4.1578 -4.9031 5.9619 34 1 5.8701 -5.1940 6.3511 35 1 5.0387 -2.5680 -1.0917 36 1 3.3730 -2.6737 -1.8764 37 1 3.3489 -0.1534 -2.1661 38 1 5.0145 -0.0465 -1.3814 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091444372.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:35 Heat of formation + Delta-G solvation = -41.850696 kcal Electronic energy + Delta-G solvation = -19960.012737 eV Core-core repulsion = 16895.157770 eV Total energy + Delta-G solvation = -3064.854967 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.12071 -37.78410 -36.71872 -35.31742 -32.13402 -31.97361 -30.91174 -27.48271 -25.62237 -24.71407 -23.68903 -21.77487 -21.26374 -19.27233 -18.78812 -17.37015 -16.79036 -16.48181 -15.91957 -15.64436 -15.08055 -14.74121 -14.38568 -14.14064 -13.88838 -13.54096 -13.37109 -12.96069 -12.93276 -12.63126 -12.34776 -12.14993 -12.00140 -11.47817 -11.18705 -11.09230 -10.85619 -10.59222 -10.28729 -10.16453 -9.96215 -9.81946 -9.63637 -9.19130 -9.03418 -8.66688 -8.55308 -7.90536 -6.15646 -4.17228 0.95854 1.54597 2.31132 3.09317 3.19732 3.25020 3.34238 3.35916 4.33607 4.36677 4.53786 4.59691 4.80176 4.86072 4.94742 5.07284 5.09814 5.12219 5.32184 5.38264 5.50641 5.54647 5.61914 5.76649 5.86547 5.91472 5.95755 6.06923 6.14208 6.18532 6.38898 6.40469 6.64679 6.87666 7.05091 7.10733 7.66514 8.20754 8.47006 8.90085 9.47276 10.96358 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.025570 B = 0.004005 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.776739 B = 6989.722513 C = 7137.394217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.079 3.921 3 Si 0.873 3.127 4 H -0.272 1.272 5 H -0.291 1.291 6 H -0.263 1.263 7 C -0.483 4.483 8 H 0.081 0.919 9 C -0.007 4.007 10 C 0.104 3.896 11 O -0.325 6.325 12 C 0.487 3.513 13 O -0.521 6.521 14 C -0.181 4.181 15 C -0.046 4.046 16 C -0.109 4.109 17 C -0.065 4.065 18 S -0.276 6.276 19 C -0.075 4.075 20 C -0.089 4.089 21 C -0.172 4.172 22 C -0.189 4.189 23 H 0.266 0.734 24 H 0.071 0.929 25 H 0.046 0.954 26 H 0.144 0.856 27 H 0.085 0.915 28 H 0.115 0.885 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.406 -7.453 11.371 18.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.124 4.124 3 Si 0.701 3.299 4 H -0.198 1.198 5 H -0.217 1.217 6 H -0.188 1.188 7 C -0.520 4.520 8 H 0.099 0.901 9 C -0.008 4.008 10 C 0.031 3.969 11 O -0.240 6.240 12 C 0.334 3.666 13 O -0.415 6.415 14 C -0.200 4.200 15 C -0.047 4.047 16 C -0.147 4.147 17 C -0.213 4.213 18 S -0.049 6.049 19 C -0.223 4.223 20 C -0.128 4.128 21 C -0.210 4.210 22 C -0.226 4.226 23 H 0.075 0.925 24 H 0.089 0.911 25 H 0.064 0.936 26 H 0.162 0.838 27 H 0.104 0.896 28 H 0.133 0.867 29 H 0.109 0.891 30 H 0.124 0.876 31 H 0.106 0.894 32 H 0.131 0.869 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 13.028 -7.051 12.348 19.285 hybrid contribution -0.378 1.130 -1.140 1.649 sum 12.650 -5.922 11.208 17.908 Atomic orbital electron populations 1.69898 1.06300 1.27178 1.49738 1.24965 0.94582 0.98895 0.93973 0.87000 0.80339 0.83618 0.78984 1.19791 1.21749 1.18757 1.20200 0.86643 0.94900 1.50235 0.90112 1.19330 0.95780 1.01157 0.84578 1.23145 0.97497 0.85568 0.90697 1.86664 1.60309 1.46659 1.30386 1.21485 0.77131 0.87286 0.80722 1.90708 1.37722 1.39556 1.73491 1.21944 1.04679 0.97774 0.95585 1.22488 0.94254 0.94844 0.93119 1.21467 0.93863 0.97877 1.01501 1.23419 1.06264 0.99442 0.92220 1.86740 1.30115 1.62411 1.25657 1.23353 0.97075 1.01404 1.00461 1.20932 1.03369 0.97246 0.91256 1.22807 1.00872 0.92246 1.05032 1.23015 1.01221 0.96053 1.02314 0.92459 0.91105 0.93592 0.83837 0.89625 0.86674 0.89086 0.87551 0.89355 0.86943 0.89169 0.89143 0.90862 0.89100 0.88648 0.90805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.86 13.96 55.43 0.77 -26.09 16 2 C 0.08 2.22 5.46 -17.82 -0.10 2.13 16 3 Si 0.87 21.36 25.22 -169.99 -4.29 17.07 16 4 H -0.27 -6.41 7.09 56.52 0.40 -6.01 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.26 -6.18 5.48 56.52 0.31 -5.87 16 7 C -0.48 -13.36 9.33 -34.44 -0.32 -13.69 16 8 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 9 C -0.01 -0.17 1.08 -155.66 -0.17 -0.34 16 10 C 0.10 2.28 5.05 37.16 0.19 2.47 16 11 O -0.33 -6.81 10.17 -40.77 -0.41 -7.22 16 12 C 0.49 8.70 7.62 34.26 0.26 8.96 16 13 O -0.52 -9.83 13.33 -19.29 -0.26 -10.09 16 14 C -0.18 -2.45 9.63 -37.85 -0.36 -2.81 16 15 C -0.05 -0.52 5.02 -101.18 -0.51 -1.03 16 16 C -0.11 -1.25 5.12 -27.55 -0.14 -1.39 16 17 C -0.07 -0.74 6.45 37.51 0.24 -0.50 16 18 S -0.28 -2.95 22.23 -107.50 -2.39 -5.34 16 19 C -0.07 -0.66 6.48 37.24 0.24 -0.41 16 20 C -0.09 -0.76 5.87 -27.82 -0.16 -0.92 16 21 C -0.17 -3.47 9.96 -26.70 -0.27 -3.73 16 22 C -0.19 -3.93 7.80 -26.69 -0.21 -4.13 16 23 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 24 H 0.07 1.66 6.02 -51.93 -0.31 1.35 16 25 H 0.05 0.91 8.04 -51.93 -0.42 0.50 16 26 H 0.14 1.70 7.99 -52.49 -0.42 1.28 16 27 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.12 1.58 5.14 -51.92 -0.27 1.31 16 29 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.09 0.65 7.89 -51.93 -0.41 0.24 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 37 H 0.10 2.07 7.58 -51.93 -0.39 1.67 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 321.78 15.07 4.85 4.85 Total: -1.00 -30.57 321.78 -8.71 -39.28 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -5.68 Total: 2.94 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -1.30 Total: -15.40 kcal Atomic # 7 Polarization: -26.86 SS G_CDS: 0.77 Total: -26.09 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.67 Total: -17.31 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.29 Total: 17.07 kcal Atomic # 16 Polarization: -2.95 SS G_CDS: -2.39 Total: -5.34 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.57 -8.71 -39.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091444372.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.575 kcal (2) G-P(sol) polarization free energy of solvation -30.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds