Wall clock time and date at job start Tue Mar 31 2020 05:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 120.00170 * 2 1 4 4 H 1.48502 * 109.47245 * 270.27693 * 3 2 1 5 5 H 1.48506 * 109.46782 * 30.27261 * 3 2 1 6 6 H 1.48502 * 109.47140 * 150.27241 * 3 2 1 7 7 C 1.38813 * 119.99991 * 180.27677 * 2 1 3 8 8 H 1.08000 * 120.00248 * 162.50270 * 7 2 1 9 9 N 1.36938 * 119.99821 * 342.49595 * 7 2 1 10 10 C 1.46929 * 120.63068 * 332.30991 * 9 7 2 11 11 C 1.52760 * 109.00960 * 233.58060 * 10 9 7 12 12 C 1.53047 * 109.38266 * 305.59022 * 11 10 9 13 13 N 1.46494 * 109.45571 * 181.25915 * 12 11 10 14 14 C 1.38466 * 120.00244 * 84.93626 * 13 12 11 15 15 N 1.32474 * 119.19839 * 359.72204 * 14 13 12 16 16 C 1.32288 * 120.75024 * 179.76308 * 15 14 13 17 17 C 1.38697 * 119.18279 * 0.50576 * 16 15 14 18 18 Cl 1.73595 * 120.73625 * 179.72979 * 17 16 15 19 19 C 1.38702 * 118.53397 * 359.74763 * 17 16 15 20 20 N 1.32285 * 119.17818 * 0.02562 * 19 17 16 21 21 C 1.53039 * 109.53709 * 61.23989 * 12 11 10 22 22 C 1.46929 * 120.63009 * 152.58705 * 9 7 2 23 23 H 0.97003 * 120.00096 * 359.72977 * 1 2 3 24 24 H 1.08999 * 109.58872 * 353.42246 * 10 9 7 25 25 H 1.09003 * 109.58399 * 113.83943 * 10 9 7 26 26 H 1.08994 * 109.56594 * 185.55179 * 11 10 9 27 27 H 1.08997 * 109.35873 * 65.49831 * 11 10 9 28 28 H 1.08994 * 109.45658 * 301.22118 * 12 11 10 29 29 H 0.97010 * 119.99892 * 264.92733 * 13 12 11 30 30 H 1.07998 * 120.40820 * 180.25672 * 16 15 14 31 31 H 1.07996 * 120.40912 * 179.97438 * 19 17 16 32 32 H 1.09000 * 109.49989 * 178.68297 * 21 12 11 33 33 H 1.09000 * 109.52347 * 58.59851 * 21 12 11 34 34 H 1.08997 * 109.58437 * 246.15905 * 22 9 7 35 35 H 1.08994 * 109.58257 * 6.58677 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4919 2.0498 -1.4001 5 1 1.4505 2.6510 0.7058 6 1 3.5507 1.4385 0.6943 7 6 2.0102 -1.2021 -0.0058 8 1 3.0528 -1.2225 -0.2871 9 7 1.3731 -2.3623 0.3453 10 6 0.2307 -2.3390 1.2691 11 6 0.4999 -3.3092 2.4178 12 6 0.8206 -4.6934 1.8490 13 7 1.0495 -5.6323 2.9499 14 6 -0.0228 -6.2716 3.5490 15 7 -1.2494 -6.0182 3.1175 16 6 -2.2956 -6.6151 3.6645 17 6 -2.0964 -7.5069 4.7079 18 17 -3.4408 -8.3075 5.4597 19 6 -0.7993 -7.7448 5.1377 20 7 0.2023 -7.1173 4.5434 21 6 2.0774 -4.6108 0.9797 22 6 1.8226 -3.6547 -0.1899 23 1 -0.4850 0.8401 0.0040 24 1 0.1020 -1.3319 1.6657 25 1 -0.6726 -2.6440 0.7408 26 1 -0.3816 -3.3733 3.0556 27 1 1.3472 -2.9509 3.0024 28 1 -0.0171 -5.0404 1.2442 29 1 1.9523 -5.8063 3.2592 30 1 -3.2929 -6.4075 3.3057 31 1 -0.6094 -8.4330 5.9480 32 1 2.3186 -5.6013 0.5938 33 1 2.9102 -4.2405 1.5775 34 1 1.0517 -4.0692 -0.8394 35 1 2.7439 -3.5154 -0.7554 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093538068.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:32 Heat of formation + Delta-G solvation = 70.324714 kcal Electronic energy + Delta-G solvation = -19612.657800 eV Core-core repulsion = 16479.375825 eV Total energy + Delta-G solvation = -3133.281974 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.03938 -38.10647 -36.77250 -35.19011 -33.82230 -32.56203 -30.72014 -30.00810 -28.89922 -25.26470 -24.71668 -23.29852 -22.20531 -21.59189 -19.45176 -18.12660 -17.67555 -16.76390 -16.39778 -15.34013 -15.10729 -14.68684 -14.56682 -13.89609 -13.69042 -13.55689 -13.09196 -13.02383 -12.38649 -12.34853 -11.57409 -11.50804 -11.47610 -11.10876 -11.04177 -10.98184 -10.72936 -10.53569 -10.31584 -10.22573 -9.91834 -9.64934 -9.52467 -9.16272 -8.49926 -7.94596 -6.72038 -5.81087 -3.23247 0.93517 0.99764 1.93503 2.93645 3.36428 3.43691 3.45782 3.73657 4.05721 4.37504 4.47853 4.61348 4.85026 5.23228 5.36550 5.41750 5.53707 5.57936 5.78662 5.83652 6.04490 6.20044 6.35942 6.48477 6.53704 6.61860 6.72482 6.79459 6.88538 7.07740 7.34292 7.46651 7.64721 7.77546 8.24926 8.42286 9.18504 9.81897 10.37888 11.27597 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.034589 B = 0.003480 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.322136 B = 8044.705659 C = 8471.462581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.255 4.255 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.175 3.825 11 C -0.145 4.145 12 C 0.162 3.838 13 N -0.682 5.682 14 C 0.571 3.429 15 N -0.547 5.547 16 C 0.214 3.786 17 C -0.224 4.224 18 Cl -0.058 7.058 19 C 0.210 3.790 20 N -0.566 5.566 21 C -0.141 4.141 22 C 0.150 3.850 23 H 0.254 0.746 24 H 0.089 0.911 25 H 0.021 0.979 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.087 0.913 29 H 0.410 0.590 30 H 0.173 0.827 31 H 0.171 0.829 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.021 0.979 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.171 -15.608 9.176 18.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.385 4.385 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.059 3.941 13 N -0.314 5.314 14 C 0.215 3.785 15 N -0.269 5.269 16 C 0.044 3.956 17 C -0.260 4.260 18 Cl -0.030 7.030 19 C 0.041 3.959 20 N -0.289 5.289 21 C -0.181 4.181 22 C 0.023 3.977 23 H 0.064 0.936 24 H 0.107 0.893 25 H 0.039 0.961 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.105 0.895 29 H 0.247 0.753 30 H 0.190 0.810 31 H 0.188 0.812 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.039 0.961 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.573 -14.860 8.576 17.349 hybrid contribution -0.130 0.264 0.718 0.776 sum -2.702 -14.596 9.295 17.514 Atomic orbital electron populations 1.70037 1.05260 1.25566 1.53607 1.25033 0.95268 0.98419 1.00833 0.86321 0.79181 0.83686 0.77720 1.21367 1.21542 1.20501 1.19160 0.92770 0.84768 1.41776 0.91654 1.44099 1.36001 1.01397 1.50035 1.20664 0.88721 0.98136 0.87641 1.22520 1.00446 0.95032 1.00567 1.21156 0.98950 0.88299 0.85702 1.44880 1.05523 1.44515 1.36481 1.19540 0.86836 0.86254 0.85913 1.68194 0.98140 1.28399 1.32189 1.22998 0.98274 0.86547 0.87797 1.22311 0.91273 1.07488 1.04930 1.98348 1.44555 1.78828 1.81299 1.22847 0.85787 0.92574 0.94708 1.68068 1.35490 1.13120 1.12224 1.22379 0.96672 0.99916 0.99123 1.20826 0.98055 0.86641 0.92184 0.93587 0.89267 0.96061 0.92854 0.92794 0.89472 0.75271 0.80960 0.81173 0.92529 0.91743 0.96088 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.89 11.20 55.49 0.62 -25.27 16 2 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 3 Si 0.90 21.44 29.59 -169.99 -5.03 16.41 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.26 -6.88 9.59 -15.06 -0.14 -7.03 16 8 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 9 N -0.59 -14.50 3.00 -172.58 -0.52 -15.02 16 10 C 0.17 4.12 5.28 -3.93 -0.02 4.10 16 11 C -0.15 -2.80 5.65 -26.83 -0.15 -2.95 16 12 C 0.16 2.72 2.41 -67.89 -0.16 2.55 16 13 N -0.68 -10.01 5.22 -55.75 -0.29 -10.30 16 14 C 0.57 8.54 8.40 -322.77 -2.71 5.83 16 15 N -0.55 -8.20 9.20 -13.90 -0.13 -8.33 16 16 C 0.21 2.57 11.12 -17.19 -0.19 2.38 16 17 C -0.22 -2.41 6.36 -39.24 -0.25 -2.66 16 18 Cl -0.06 -0.53 29.02 -51.86 -1.50 -2.04 16 19 C 0.21 2.31 11.12 -17.19 -0.19 2.12 16 20 N -0.57 -7.68 10.46 -13.90 -0.15 -7.82 16 21 C -0.14 -2.30 5.55 -26.61 -0.15 -2.45 16 22 C 0.15 3.01 6.52 -3.71 -0.02 2.99 16 23 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 24 H 0.09 2.38 6.04 -51.93 -0.31 2.06 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.09 1.58 7.51 -51.93 -0.39 1.19 16 29 H 0.41 5.36 8.72 -40.82 -0.36 5.01 16 30 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 LS Contribution 307.27 15.07 4.63 4.63 Total: -1.00 -29.57 307.27 -10.85 -40.42 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -4.40 Total: 2.43 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: -4.08 Total: 4.89 kcal Atomic # 7 Polarization: -66.28 SS G_CDS: -0.46 Total: -66.74 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.50 Total: -2.04 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.57 -10.85 -40.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093538068.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.744 kcal (2) G-P(sol) polarization free energy of solvation -29.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds