Wall clock time and date at job start Tue Mar 31 2020 05:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 119.99929 * 2 1 4 4 H 1.48501 * 109.47387 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47156 * 299.99624 * 3 2 1 6 6 H 1.48496 * 109.47313 * 59.99459 * 3 2 1 7 7 C 1.38813 * 119.99690 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99916 * 197.36279 * 7 2 1 9 9 N 1.36930 * 120.00251 * 17.36866 * 7 2 1 10 10 C 1.46933 * 120.63158 * 207.66835 * 9 7 2 11 11 C 1.53189 * 108.77645 * 233.63053 * 10 9 7 12 12 C 1.53041 * 109.31395 * 305.36199 * 11 10 9 13 13 N 1.46498 * 109.46077 * 181.38636 * 12 11 10 14 14 C 1.38602 * 119.99587 * 155.00093 * 13 12 11 15 15 N 1.32956 * 120.54392 * 359.97438 * 14 13 12 16 16 C 1.31767 * 120.70553 * 180.02562 * 15 14 13 17 17 N 1.31766 * 121.85492 * 359.97438 * 16 15 14 18 18 C 1.32557 * 121.01878 * 0.02562 * 17 16 15 19 19 C 1.38204 * 119.18853 * 0.02562 * 18 17 16 20 20 Cl 1.73594 * 120.84590 * 179.97438 * 19 18 17 21 21 C 1.53045 * 109.53737 * 61.36478 * 12 11 10 22 22 C 1.46929 * 120.63448 * 27.68896 * 9 7 2 23 23 H 0.96992 * 120.00108 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.58660 * 113.83849 * 10 9 7 25 25 H 1.08999 * 109.70101 * 353.48554 * 10 9 7 26 26 H 1.09001 * 109.49706 * 185.41340 * 11 10 9 27 27 H 1.09005 * 109.49763 * 65.31355 * 11 10 9 28 28 H 1.08994 * 109.46151 * 301.36225 * 12 11 10 29 29 H 0.96993 * 119.99780 * 334.99416 * 13 12 11 30 30 H 1.08001 * 119.07352 * 180.02562 * 16 15 14 31 31 H 1.08008 * 120.40675 * 179.72695 * 18 17 16 32 32 H 1.09000 * 109.49767 * 58.58600 * 21 12 11 33 33 H 1.08995 * 109.49623 * 178.68286 * 21 12 11 34 34 H 1.09001 * 109.58464 * 246.15839 * 22 9 7 35 35 H 1.08996 * 109.58233 * 6.58651 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0534 -1.2234 0.2797 9 7 1.3724 -2.3612 -0.3529 10 6 1.8195 -3.6547 0.1816 11 6 2.0753 -4.6099 -0.9885 12 6 0.8200 -4.6901 -1.8602 13 7 1.0498 -5.6281 -2.9617 14 6 -0.0233 -6.2661 -3.5639 15 7 -1.2655 -6.0350 -3.1501 16 6 -2.2880 -6.6401 -3.7200 17 7 -2.1272 -7.4905 -4.7136 18 6 -0.9198 -7.7731 -5.1822 19 6 0.1831 -7.1633 -4.6150 20 17 1.7839 -7.5023 -5.1945 21 6 0.5018 -3.3049 -2.4280 22 6 0.2282 -2.3350 -1.2743 23 1 -0.4850 0.8400 -0.0004 24 1 1.0470 -4.0691 0.8294 25 1 2.7394 -3.5192 0.7504 26 1 2.3147 -5.6011 -0.6033 27 1 2.9093 -4.2395 -1.5848 28 1 -0.0193 -5.0366 -1.2572 29 1 1.9529 -5.8027 -3.2696 30 1 -3.2860 -6.4326 -3.3631 31 1 -0.7991 -8.4750 -5.9942 32 1 1.3506 -2.9469 -3.0107 33 1 -0.3787 -3.3674 -3.0674 34 1 -0.6740 -2.6418 -0.7451 35 1 0.0988 -1.3267 -1.6675 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097847490.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:33 Heat of formation + Delta-G solvation = 47.251464 kcal Electronic energy + Delta-G solvation = -19825.686443 eV Core-core repulsion = 16691.403937 eV Total energy + Delta-G solvation = -3134.282506 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.094 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.97741 -39.64159 -37.74163 -37.02414 -34.66428 -33.67619 -32.41127 -31.63163 -30.46795 -27.00025 -25.41487 -24.74907 -23.83977 -23.09325 -21.06172 -19.34277 -18.78952 -18.49033 -17.15528 -16.93373 -16.32693 -16.23729 -15.89530 -15.49795 -15.35398 -14.80520 -14.61598 -14.49311 -14.01447 -13.22751 -13.18386 -13.06576 -12.93098 -12.64023 -12.49095 -12.38531 -12.16619 -12.03547 -11.93184 -11.81301 -11.42384 -11.32443 -10.73408 -10.54254 -10.18963 -9.14814 -8.71321 -7.88043 -5.33109 -0.13954 0.24615 0.99791 1.46181 1.48567 1.58621 1.92627 2.51176 2.77871 3.20034 3.28057 3.30308 3.57806 3.68284 3.86322 4.05796 4.07961 4.33603 4.46214 4.49719 4.65964 4.80341 4.88009 5.00876 5.05147 5.12608 5.28112 5.31233 5.46055 5.63786 5.67464 5.71368 5.93057 6.38401 6.49180 7.13933 7.20111 7.84755 8.36384 9.18938 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.028481 B = 0.004090 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.883630 B = 6843.758675 C = 7255.418370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.050 4.050 3 Si 0.965 3.035 4 H -0.265 1.265 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.262 4.262 8 H 0.070 0.930 9 N -0.610 5.610 10 C 0.144 3.856 11 C -0.127 4.127 12 C 0.172 3.828 13 N -0.690 5.690 14 C 0.441 3.559 15 N -0.586 5.586 16 C 0.338 3.662 17 N -0.566 5.566 18 C 0.194 3.806 19 C -0.223 4.223 20 Cl -0.040 7.040 21 C -0.126 4.126 22 C 0.184 3.816 23 H 0.249 0.751 24 H 0.017 0.983 25 H 0.064 0.936 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.416 0.584 30 H 0.224 0.776 31 H 0.200 0.800 32 H 0.049 0.951 33 H 0.052 0.948 34 H -0.002 1.002 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.321 -16.708 -10.035 19.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.245 4.245 3 Si 0.793 3.207 4 H -0.189 1.189 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.393 4.393 8 H 0.088 0.912 9 N -0.333 5.333 10 C 0.018 3.982 11 C -0.166 4.166 12 C 0.068 3.932 13 N -0.321 5.321 14 C 0.195 3.805 15 N -0.311 5.311 16 C 0.050 3.950 17 N -0.285 5.285 18 C 0.032 3.968 19 C -0.260 4.260 20 Cl -0.012 7.012 21 C -0.167 4.167 22 C 0.058 3.942 23 H 0.059 0.941 24 H 0.035 0.965 25 H 0.083 0.917 26 H 0.106 0.894 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.255 0.745 30 H 0.240 0.760 31 H 0.217 0.783 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.016 0.984 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.492 -16.286 -9.572 18.896 hybrid contribution 1.338 1.025 -0.253 1.704 sum 1.829 -15.261 -9.825 18.242 Atomic orbital electron populations 1.70195 1.06728 1.25778 1.55420 1.25784 0.95973 1.01504 1.01284 0.85245 0.78758 0.79987 0.76689 1.18907 1.21893 1.21958 1.19574 0.93109 0.85989 1.40586 0.91191 1.44351 1.35810 1.02385 1.50781 1.20991 0.97937 0.85502 0.93721 1.22178 0.96448 1.00400 0.97592 1.20751 0.98691 0.87348 0.86450 1.44966 1.06387 1.44473 1.36240 1.18593 0.88263 0.86689 0.86990 1.68238 0.98233 1.30655 1.33949 1.25354 0.98381 0.85015 0.86253 1.68629 1.24603 1.19636 1.15619 1.23402 0.85054 0.93035 0.95357 1.22108 0.90373 1.09107 1.04457 1.98354 1.20932 1.94267 1.87617 1.22295 1.00121 0.95734 0.98542 1.20475 0.87911 0.97270 0.88584 0.94142 0.96482 0.91711 0.89381 0.91406 0.90668 0.74453 0.75993 0.78305 0.93199 0.92954 0.98425 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.43 11.19 21.65 0.24 -55.19 16 2 C -0.05 -2.78 4.91 84.86 0.42 -2.36 16 3 Si 0.96 44.59 29.59 68.60 2.03 46.62 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 6 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 7 C -0.26 -14.22 9.59 84.03 0.81 -13.42 16 8 H 0.07 3.66 7.89 -2.91 -0.02 3.64 16 9 N -0.61 -30.05 2.99 -699.09 -2.09 -32.15 16 10 C 0.14 5.68 6.51 86.36 0.56 6.24 16 11 C -0.13 -3.87 5.55 30.67 0.17 -3.70 16 12 C 0.17 5.52 2.44 45.02 0.11 5.63 16 13 N -0.69 -18.35 5.18 -323.82 -1.68 -20.02 16 14 C 0.44 11.76 7.49 133.18 1.00 12.75 16 15 N -0.59 -16.55 9.35 -197.51 -1.85 -18.40 16 16 C 0.34 7.84 12.28 180.90 2.22 10.06 16 17 N -0.57 -12.56 10.43 -200.24 -2.09 -14.65 16 18 C 0.19 3.78 11.11 84.58 0.94 4.72 16 19 C -0.22 -4.88 6.38 22.62 0.14 -4.73 16 20 Cl -0.04 -0.73 27.78 -2.72 -0.08 -0.81 16 21 C -0.13 -4.86 5.66 30.67 0.17 -4.69 16 22 C 0.18 8.95 5.31 86.36 0.46 9.40 16 23 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 24 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.06 2.44 7.94 -2.39 -0.02 2.42 16 26 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 28 H 0.08 2.65 7.57 -2.39 -0.02 2.64 16 29 H 0.42 9.62 7.40 -92.71 -0.69 8.94 16 30 H 0.22 3.72 8.06 -2.91 -0.02 3.70 16 31 H 0.20 2.49 8.06 -2.91 -0.02 2.46 16 32 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 35 H 0.05 2.97 6.04 -2.39 -0.01 2.96 16 Total: -1.00 -64.16 305.18 1.92 -62.24 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.43 Total: 12.45 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: 7.00 Total: 19.90 kcal Atomic # 7 Polarization: -132.94 SS G_CDS: -7.46 Total: -140.41 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -0.08 Total: -0.81 kcal Total: -64.16 1.92 -62.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097847490.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.495 kcal (2) G-P(sol) polarization free energy of solvation -64.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds