Wall clock time and date at job start Tue Mar 31 2020 05:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99724 * 2 1 4 4 H 1.48500 * 109.46986 * 240.00274 * 3 2 1 5 5 H 1.48495 * 109.47095 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46875 * 120.00492 * 3 2 1 7 7 C 1.38804 * 120.00488 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00759 * 197.35407 * 7 2 1 9 9 N 1.36943 * 119.99837 * 17.35070 * 7 2 1 10 10 C 1.46924 * 120.63080 * 27.67734 * 9 7 2 11 11 C 1.53191 * 108.77910 * 126.41127 * 10 9 7 12 12 C 1.53048 * 109.30875 * 54.63324 * 11 10 9 13 13 N 1.46498 * 109.45605 * 178.62723 * 12 11 10 14 14 C 1.39118 * 119.99895 * 205.02876 * 13 12 11 15 15 C 1.39492 * 120.13953 * 0.02562 * 14 13 12 16 16 C 1.38535 * 117.91190 * 180.02562 * 15 14 13 17 17 C 1.38950 * 118.02222 * 0.02562 * 16 15 14 18 18 Cl 1.73605 * 120.00669 * 179.97438 * 17 16 15 19 19 N 1.31874 * 119.98516 * 359.97438 * 17 16 15 20 20 N 1.28348 * 122.27124 * 359.70993 * 19 17 16 21 21 C 1.53040 * 109.53728 * 298.63595 * 12 11 10 22 22 C 1.46929 * 120.62913 * 207.69755 * 9 7 2 23 23 H 0.97003 * 120.00197 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.58430 * 6.62466 * 10 9 7 25 25 H 1.08998 * 109.70564 * 246.27076 * 10 9 7 26 26 H 1.09005 * 109.49780 * 294.68528 * 11 10 9 27 27 H 1.08999 * 109.50116 * 174.58457 * 11 10 9 28 28 H 1.09003 * 109.45561 * 58.65798 * 12 11 10 29 29 H 0.96997 * 120.00292 * 25.03428 * 13 12 11 30 30 H 1.08000 * 121.04808 * 359.97438 * 15 14 13 31 31 H 1.08001 * 120.98642 * 180.02562 * 16 15 14 32 32 H 1.09004 * 109.49060 * 181.31754 * 21 12 11 33 33 H 1.08994 * 109.49889 * 301.41358 * 21 12 11 34 34 H 1.08996 * 109.58998 * 353.37442 * 22 9 7 35 35 H 1.08999 * 109.58271 * 113.80292 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0534 -1.2235 0.2784 9 7 1.3724 -2.3609 -0.3547 10 6 0.2278 -2.3340 -1.2755 11 6 0.5005 -3.3036 -2.4297 12 6 0.8184 -4.6890 -1.8624 13 7 1.0476 -5.6267 -2.9644 14 6 0.8403 -6.9890 -2.7730 15 6 0.4137 -7.4652 -1.5332 16 6 0.2222 -8.8301 -1.3937 17 6 0.4673 -9.6398 -2.4960 18 17 0.2446 -11.3574 -2.3783 19 7 0.8690 -9.1031 -3.6317 20 7 1.0424 -7.8387 -3.7686 21 6 2.0742 -4.6095 -0.9913 22 6 1.8194 -3.6547 0.1792 23 1 -0.4850 0.8401 0.0004 24 1 0.0985 -1.3254 -1.6683 25 1 -0.6758 -2.6391 -0.7477 26 1 1.3491 -2.9457 -3.0128 27 1 -0.3804 -3.3655 -3.0687 28 1 -0.0207 -5.0357 -1.2592 29 1 1.3440 -5.2978 -3.8274 30 1 0.2389 -6.7911 -0.7078 31 1 -0.1077 -9.2523 -0.4560 32 1 2.3134 -5.6010 -0.6067 33 1 2.9079 -4.2393 -1.5879 34 1 2.7401 -3.5177 0.7461 35 1 1.0470 -4.0690 0.8272 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104361073.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:49 Heat of formation + Delta-G solvation = 75.181288 kcal Electronic energy + Delta-G solvation = -19562.839416 eV Core-core repulsion = 16429.768038 eV Total energy + Delta-G solvation = -3133.071378 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.08782 -38.39439 -36.90225 -35.57588 -33.15542 -32.78312 -31.05333 -30.03368 -28.99855 -25.38242 -24.79577 -23.55741 -22.34071 -21.68902 -19.62174 -18.22042 -17.48784 -16.91507 -16.85121 -15.43842 -15.21481 -14.83469 -14.37932 -13.92201 -13.77039 -13.50881 -13.38938 -13.09437 -12.54563 -12.41436 -11.74174 -11.64670 -11.50410 -11.24085 -11.18009 -10.91033 -10.81139 -10.54744 -10.36760 -10.29306 -10.06248 -9.81550 -9.76119 -9.67162 -8.59692 -8.01840 -6.84400 -5.91815 -3.34337 0.65683 0.92843 1.60601 2.98462 3.31655 3.37975 3.38984 3.44387 4.27371 4.39587 4.42706 4.50390 4.74700 5.02485 5.20705 5.29178 5.34414 5.37021 5.52317 5.56906 5.74329 5.85266 6.05444 6.23303 6.24489 6.30883 6.42340 6.59156 6.76032 6.95769 7.14836 7.43887 7.50618 7.68445 8.31515 8.62470 9.07760 9.70560 10.25709 11.17182 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.053335 B = 0.003171 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.856621 B = 8826.688713 C = 8962.383336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.005 3.995 3 Si 0.904 3.096 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.258 4.258 8 H 0.066 0.934 9 N -0.591 5.591 10 C 0.174 3.826 11 C -0.147 4.147 12 C 0.153 3.847 13 N -0.697 5.697 14 C 0.352 3.648 15 C -0.167 4.167 16 C -0.065 4.065 17 C 0.049 3.951 18 Cl -0.026 7.026 19 N -0.189 5.189 20 N -0.298 5.298 21 C -0.147 4.147 22 C 0.147 3.853 23 H 0.256 0.744 24 H 0.094 0.906 25 H 0.022 0.978 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.408 0.592 30 H 0.158 0.842 31 H 0.156 0.844 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.672 -15.373 -2.550 15.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.194 4.194 3 Si 0.733 3.267 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.387 4.387 8 H 0.084 0.916 9 N -0.314 5.314 10 C 0.047 3.953 11 C -0.187 4.187 12 C 0.049 3.951 13 N -0.327 5.327 14 C 0.109 3.891 15 C -0.200 4.200 16 C -0.093 4.093 17 C -0.128 4.128 18 Cl 0.002 6.998 19 N -0.032 5.032 20 N -0.152 5.152 21 C -0.188 4.188 22 C 0.020 3.980 23 H 0.066 0.934 24 H 0.112 0.888 25 H 0.040 0.960 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.245 0.755 30 H 0.176 0.824 31 H 0.174 0.826 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -0.398 -15.404 -3.912 15.898 hybrid contribution 0.084 0.989 1.187 1.547 sum -0.314 -14.415 -2.725 14.674 Atomic orbital electron populations 1.70000 1.05286 1.25872 1.53506 1.25041 0.95300 0.98524 1.00567 0.86354 0.78948 0.83163 0.78217 1.20950 1.21562 1.20811 1.19140 0.92790 0.84780 1.41980 0.91579 1.44083 1.35759 1.01492 1.50078 1.20769 0.88826 0.98251 0.87419 1.22555 1.01067 0.93906 1.01127 1.21273 0.97938 0.88963 0.86889 1.45114 1.70508 1.00967 1.16137 1.20247 0.89774 0.88012 0.91045 1.22001 1.03704 0.95844 0.98501 1.21967 0.95684 0.92686 0.99009 1.23017 1.07290 0.88533 0.93989 1.98384 1.95445 1.08243 1.97727 1.72570 1.06148 1.04309 1.20209 1.73128 1.21093 0.95600 1.25334 1.22552 0.97523 0.99583 0.99109 1.20879 0.98066 0.86687 0.92371 0.93411 0.88761 0.95982 0.91742 0.92344 0.90444 0.75534 0.82403 0.82633 0.92910 0.91573 0.92265 0.96241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.81 11.19 55.49 0.62 -24.19 16 2 C 0.00 0.12 4.91 -17.43 -0.09 0.03 16 3 Si 0.90 20.76 29.59 -169.99 -5.03 15.73 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.26 -6.65 9.58 -15.06 -0.14 -6.79 16 8 H 0.07 1.68 7.89 -52.49 -0.41 1.27 16 9 N -0.59 -13.54 3.00 -172.32 -0.52 -14.06 16 10 C 0.17 3.72 5.31 -3.71 -0.02 3.70 16 11 C -0.15 -2.41 5.55 -26.61 -0.15 -2.55 16 12 C 0.15 2.19 2.11 -67.89 -0.14 2.04 16 13 N -0.70 -9.12 5.25 -53.75 -0.28 -9.40 16 14 C 0.35 4.76 7.73 -154.74 -1.20 3.57 16 15 C -0.17 -1.92 8.94 -39.00 -0.35 -2.27 16 16 C -0.06 -0.67 9.99 -39.21 -0.39 -1.07 16 17 C 0.05 0.60 7.37 -17.27 -0.13 0.47 16 18 Cl -0.03 -0.27 29.13 -51.86 -1.51 -1.78 16 19 N -0.19 -2.80 11.48 32.90 0.38 -2.43 16 20 N -0.30 -4.51 11.53 31.24 0.36 -4.15 16 21 C -0.15 -2.24 5.61 -26.61 -0.15 -2.38 16 22 C 0.15 2.74 6.52 -3.71 -0.02 2.72 16 23 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 24 H 0.09 2.31 6.04 -51.93 -0.31 2.00 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.08 1.08 6.50 -51.93 -0.34 0.74 16 29 H 0.41 5.09 8.73 -40.82 -0.36 4.74 16 30 H 0.16 1.61 6.30 -52.49 -0.33 1.28 16 31 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.05 0.71 7.77 -51.93 -0.40 0.31 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 304.33 15.07 4.59 4.59 Total: -1.00 -28.22 304.33 -8.41 -36.63 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -4.24 Total: 1.58 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -2.78 Total: -2.53 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: 0.56 Total: -54.22 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.51 Total: -1.78 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.22 -8.41 -36.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104361073.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.814 kcal (2) G-P(sol) polarization free energy of solvation -28.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds