Wall clock time and date at job start Tue Mar 31 2020 05:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38261 * 119.99640 * 2 1 4 4 C 1.38216 * 119.99895 * 180.02562 * 3 2 1 5 5 C 1.38259 * 120.00225 * 359.97438 * 4 3 2 6 6 C 1.50690 * 120.00320 * 179.97438 * 5 4 3 7 7 C 1.38215 * 119.99472 * 0.02562 * 5 4 3 8 8 S 1.76198 * 119.99653 * 179.97438 * 7 5 4 9 9 O 1.42104 * 104.27729 * 178.92653 * 8 7 5 10 10 O 1.42108 * 104.27570 * 51.07543 * 8 7 5 11 11 C 1.81391 * 104.45172 * 295.00151 * 8 7 5 12 12 C 1.53006 * 109.47235 * 180.02562 * 11 8 7 13 13 C 1.52997 * 109.47127 * 180.02562 * 12 11 8 14 14 C 1.50696 * 109.47055 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00290 * 0.02562 * 14 13 12 16 16 C 1.37887 * 120.00079 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99685 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00129 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46879 * 60.00177 * 18 16 14 20 20 H 1.48494 * 109.47196 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47151 * 300.00589 * 18 16 14 22 22 C 1.38206 * 120.00482 * 180.27611 * 2 1 3 23 23 H 1.08996 * 109.47263 * 90.00192 * 1 2 3 24 24 H 1.08998 * 109.46781 * 210.00363 * 1 2 3 25 25 H 1.08999 * 109.47279 * 329.99901 * 1 2 3 26 26 H 1.08002 * 120.00280 * 0.02562 * 3 2 1 27 27 H 1.08003 * 120.00009 * 179.97438 * 4 3 2 28 28 H 1.08994 * 109.47310 * 270.02619 * 6 5 4 29 29 H 1.09005 * 109.47076 * 30.02430 * 6 5 4 30 30 H 1.09004 * 109.47373 * 150.01821 * 6 5 4 31 31 H 1.09001 * 109.47423 * 60.00335 * 11 8 7 32 32 H 1.09001 * 109.47260 * 300.00198 * 11 8 7 33 33 H 1.09001 * 109.47002 * 299.99604 * 12 11 8 34 34 H 1.08993 * 109.46955 * 60.00042 * 12 11 8 35 35 H 1.09001 * 109.47289 * 299.99953 * 13 12 11 36 36 H 1.09004 * 109.47261 * 59.99697 * 13 12 11 37 37 H 0.96999 * 119.99910 * 179.97438 * 17 16 14 38 38 H 1.08001 * 119.99757 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 -0.0005 5 6 4.2717 0.0002 -0.0005 6 6 5.7786 0.0002 -0.0017 7 6 3.5807 -1.1968 -0.0005 8 16 4.4617 -2.7227 -0.0012 9 8 3.4446 -3.7147 0.0248 10 8 5.3867 -2.5937 1.0699 11 6 5.3304 -2.7431 -1.5935 12 6 6.1410 -4.0350 -1.7157 13 6 6.8742 -4.0520 -3.0585 14 6 7.6730 -5.3241 -3.1786 15 1 7.6589 -6.0483 -2.3775 16 6 8.4213 -5.5640 -4.3117 17 7 8.4381 -4.6823 -5.2874 18 14 9.4110 -7.1412 -4.4609 19 1 8.4967 -8.3087 -4.3809 20 1 10.1227 -7.1576 -5.7640 21 1 10.4007 -7.2110 -3.3559 22 6 2.1981 -1.1968 -0.0058 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 1.6582 2.1327 0.0004 27 1 4.1203 2.1328 -0.0010 28 1 6.1412 0.0002 -1.0296 29 1 6.1424 0.8903 0.5118 30 1 6.1425 -0.8897 0.5120 31 1 6.0012 -1.8860 -1.6525 32 1 4.6038 -2.6924 -2.4044 33 1 6.8676 -4.0861 -0.9048 34 1 5.4700 -4.8919 -1.6569 35 1 6.1479 -4.0006 -3.8697 36 1 7.5453 -3.1950 -3.1169 37 1 8.9647 -4.8508 -6.0843 38 1 1.6581 -2.1322 -0.0099 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000105723182.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:54 Heat of formation + Delta-G solvation = -68.389332 kcal Electronic energy + Delta-G solvation = -19754.033245 eV Core-core repulsion = 16688.027476 eV Total energy + Delta-G solvation = -3066.005768 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.70421 -37.02018 -35.76422 -34.75665 -34.11016 -32.20372 -31.42272 -29.52782 -27.80311 -25.15512 -24.01902 -23.20622 -21.51561 -20.47294 -18.71072 -17.04772 -16.65087 -16.34472 -15.85532 -15.63882 -15.21161 -14.53393 -14.44304 -14.42258 -14.12082 -13.52973 -13.10517 -12.89706 -12.59183 -12.45772 -12.30834 -12.24420 -11.99691 -11.89288 -11.69422 -11.46904 -11.39729 -11.20338 -10.89595 -10.87339 -10.51152 -10.38429 -9.95401 -9.55714 -9.35242 -9.12804 -8.74563 -8.40717 -6.05992 -4.09152 0.23542 0.72342 1.09946 3.05022 3.25902 3.32375 3.36310 3.39495 3.95604 4.29413 4.42429 4.51930 4.57447 4.69990 4.92351 4.97565 5.12678 5.13741 5.28389 5.30704 5.34429 5.37137 5.45654 5.54356 5.70581 5.77125 5.84934 5.93102 6.07837 6.18019 6.22877 6.25812 6.42531 6.69445 6.84655 7.55967 7.65658 7.91787 8.31923 8.96798 9.55543 11.05158 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.029297 B = 0.003707 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.492988 B = 7550.810971 C = 7679.884369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.117 4.117 3 C -0.068 4.068 4 C -0.140 4.140 5 C 0.011 3.989 6 C -0.179 4.179 7 C -0.655 4.655 8 S 2.482 3.518 9 O -0.945 6.945 10 O -0.940 6.940 11 C -0.587 4.587 12 C -0.107 4.107 13 C 0.031 3.969 14 C -0.527 4.527 15 H 0.058 0.942 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.895 3.105 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.021 4.021 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.127 0.873 27 H 0.131 0.869 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.262 0.738 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.777 13.377 9.557 20.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.118 4.118 3 C -0.086 4.086 4 C -0.159 4.159 5 C 0.010 3.990 6 C -0.235 4.235 7 C -0.740 4.740 8 S 2.665 3.335 9 O -0.942 6.942 10 O -0.937 6.937 11 C -0.719 4.719 12 C -0.146 4.146 13 C -0.008 4.008 14 C -0.566 4.566 15 H 0.076 0.924 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.722 3.278 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.201 1.201 22 C -0.040 4.040 23 H 0.091 0.909 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.145 0.855 27 H 0.148 0.852 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.125 0.875 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.072 0.928 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.747 12.834 10.082 20.709 hybrid contribution 0.392 0.105 -0.793 0.891 sum -12.355 12.940 9.289 20.159 Atomic orbital electron populations 1.20795 0.90563 1.03040 1.02652 1.20023 0.96516 0.93105 1.02165 1.21298 0.94294 0.97699 0.95308 1.21162 0.94304 0.97751 1.02694 1.19599 0.95971 0.91912 0.91532 1.21738 0.90394 1.07062 1.04350 1.30576 1.06023 1.19376 1.18034 1.05938 0.75274 0.73812 0.78437 1.93514 1.56942 1.56517 1.87247 1.93500 1.63739 1.85516 1.50928 1.30346 1.12822 1.09738 1.19017 1.21574 0.98182 0.90898 1.03993 1.19070 0.94862 0.97601 0.89226 1.21213 1.28053 1.04375 1.02911 0.92356 1.25016 0.96711 0.96862 0.95731 1.69946 1.41162 1.35112 1.07200 0.86612 0.80259 0.83637 0.77269 1.20100 1.21265 1.20101 1.20896 0.91957 0.98983 0.92118 0.90903 0.91150 0.91458 0.85469 0.85155 0.89229 0.89660 0.87482 0.84898 0.84872 0.91300 0.91333 0.96008 0.95996 0.92831 0.83780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 36.00 0.36 -0.51 16 2 C -0.12 -1.25 5.88 -104.63 -0.62 -1.86 16 3 C -0.07 -0.66 9.70 -39.58 -0.38 -1.04 16 4 C -0.14 -1.46 9.70 -39.58 -0.38 -1.85 16 5 C 0.01 0.13 5.86 -104.63 -0.61 -0.48 16 6 C -0.18 -2.01 8.46 36.00 0.30 -1.70 16 7 C -0.65 -8.97 5.58 -39.58 -0.22 -9.19 16 8 S 2.48 38.54 4.56 -107.50 -0.49 38.05 16 9 O -0.94 -16.82 16.74 -57.54 -0.96 -17.79 16 10 O -0.94 -16.46 15.36 -57.54 -0.88 -17.34 16 11 C -0.59 -9.07 5.77 37.16 0.21 -8.86 16 12 C -0.11 -2.13 5.16 -26.73 -0.14 -2.27 16 13 C 0.03 0.77 4.97 -27.89 -0.14 0.63 16 14 C -0.53 -14.67 9.11 -34.44 -0.31 -14.99 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -26.34 13.29 55.43 0.74 -25.60 16 18 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 C -0.02 -0.27 9.16 -39.59 -0.36 -0.63 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 25 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 26 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 27 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 28 H 0.09 0.88 7.10 -51.93 -0.37 0.51 16 29 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 30 H 0.11 1.38 4.90 -51.93 -0.25 1.12 16 31 H 0.13 1.79 6.01 -51.92 -0.31 1.48 16 32 H 0.13 1.84 8.14 -51.92 -0.42 1.42 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.14 1.75 7.21 -52.49 -0.38 1.37 16 LS Contribution 326.13 15.07 4.91 4.91 Total: -1.00 -33.93 326.13 -9.59 -43.52 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -5.50 Total: -0.94 kcal Atomic # 6 Polarization: -38.82 SS G_CDS: -2.39 Total: -41.21 kcal Atomic # 7 Polarization: -26.34 SS G_CDS: 0.74 Total: -25.60 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -1.85 Total: -35.12 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 38.54 SS G_CDS: -0.49 Total: 38.05 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.93 -9.59 -43.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105723182.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.870 kcal (2) G-P(sol) polarization free energy of solvation -33.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds