Wall clock time and date at job start Tue Mar 31 2020 05:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38261 * 119.99640 * 2 1 4 4 C 1.38216 * 119.99895 * 180.02562 * 3 2 1 5 5 C 1.38259 * 120.00225 * 359.97438 * 4 3 2 6 6 C 1.50690 * 120.00320 * 179.97438 * 5 4 3 7 7 C 1.38215 * 119.99472 * 0.02562 * 5 4 3 8 8 S 1.76198 * 119.99653 * 179.97438 * 7 5 4 9 9 O 1.42104 * 104.27729 * 178.92653 * 8 7 5 10 10 O 1.42108 * 104.27570 * 51.07543 * 8 7 5 11 11 C 1.81391 * 104.45172 * 295.00151 * 8 7 5 12 12 C 1.53006 * 109.47235 * 180.02562 * 11 8 7 13 13 C 1.52997 * 109.47127 * 180.02562 * 12 11 8 14 14 C 1.50696 * 109.47055 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00290 * 0.02562 * 14 13 12 16 16 C 1.37887 * 120.00079 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99685 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00129 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46879 * 60.00177 * 18 16 14 20 20 H 1.48494 * 109.47196 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47151 * 300.00589 * 18 16 14 22 22 C 1.38206 * 120.00482 * 180.27611 * 2 1 3 23 23 H 1.08996 * 109.47263 * 90.00192 * 1 2 3 24 24 H 1.08998 * 109.46781 * 210.00363 * 1 2 3 25 25 H 1.08999 * 109.47279 * 329.99901 * 1 2 3 26 26 H 1.08002 * 120.00280 * 0.02562 * 3 2 1 27 27 H 1.08003 * 120.00009 * 179.97438 * 4 3 2 28 28 H 1.08994 * 109.47310 * 270.02619 * 6 5 4 29 29 H 1.09005 * 109.47076 * 30.02430 * 6 5 4 30 30 H 1.09004 * 109.47373 * 150.01821 * 6 5 4 31 31 H 1.09001 * 109.47423 * 60.00335 * 11 8 7 32 32 H 1.09001 * 109.47260 * 300.00198 * 11 8 7 33 33 H 1.09001 * 109.47002 * 299.99604 * 12 11 8 34 34 H 1.08993 * 109.46955 * 60.00042 * 12 11 8 35 35 H 1.09001 * 109.47289 * 299.99953 * 13 12 11 36 36 H 1.09004 * 109.47261 * 59.99697 * 13 12 11 37 37 H 0.96999 * 119.99910 * 179.97438 * 17 16 14 38 38 H 1.08001 * 119.99757 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 -0.0005 5 6 4.2717 0.0002 -0.0005 6 6 5.7786 0.0002 -0.0017 7 6 3.5807 -1.1968 -0.0005 8 16 4.4617 -2.7227 -0.0012 9 8 3.4446 -3.7147 0.0248 10 8 5.3867 -2.5937 1.0699 11 6 5.3304 -2.7431 -1.5935 12 6 6.1410 -4.0350 -1.7157 13 6 6.8742 -4.0520 -3.0585 14 6 7.6730 -5.3241 -3.1786 15 1 7.6589 -6.0483 -2.3775 16 6 8.4213 -5.5640 -4.3117 17 7 8.4381 -4.6823 -5.2874 18 14 9.4110 -7.1412 -4.4609 19 1 8.4967 -8.3087 -4.3809 20 1 10.1227 -7.1576 -5.7640 21 1 10.4007 -7.2110 -3.3559 22 6 2.1981 -1.1968 -0.0058 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 1.6582 2.1327 0.0004 27 1 4.1203 2.1328 -0.0010 28 1 6.1412 0.0002 -1.0296 29 1 6.1424 0.8903 0.5118 30 1 6.1425 -0.8897 0.5120 31 1 6.0012 -1.8860 -1.6525 32 1 4.6038 -2.6924 -2.4044 33 1 6.8676 -4.0861 -0.9048 34 1 5.4700 -4.8919 -1.6569 35 1 6.1479 -4.0006 -3.8697 36 1 7.5453 -3.1950 -3.1169 37 1 8.9647 -4.8508 -6.0843 38 1 1.6581 -2.1322 -0.0099 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000105723182.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:53 Heat of formation + Delta-G solvation = -89.553582 kcal Electronic energy + Delta-G solvation = -19754.950995 eV Core-core repulsion = 16688.027476 eV Total energy + Delta-G solvation = -3066.923519 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.53944 -38.32210 -37.09232 -36.50414 -34.97458 -34.15282 -32.28461 -30.33182 -29.58312 -25.92290 -25.71702 -24.32796 -22.52135 -22.05793 -19.93289 -18.60948 -18.06309 -17.52601 -17.13787 -16.65580 -16.48964 -16.31381 -15.74650 -15.25512 -15.12539 -14.50516 -14.25468 -14.05515 -13.93260 -13.77732 -13.43420 -13.33903 -13.21731 -13.05478 -12.96868 -12.80412 -12.69583 -12.62425 -12.49201 -12.18240 -12.13073 -11.73542 -11.52909 -11.37172 -11.02303 -10.55631 -10.31298 -9.57223 -8.21426 -6.32255 -0.98460 -0.18886 0.25939 1.41588 1.43986 1.51879 1.89188 2.36918 2.41708 2.76770 3.12231 3.15511 3.65862 3.71435 3.78160 3.88725 3.95158 4.18362 4.26835 4.36470 4.47569 4.60236 4.62521 4.67614 4.76728 4.82195 4.89041 4.91567 5.05344 5.09329 5.15610 5.29519 5.33853 5.45367 5.46462 5.63734 5.80346 5.89843 6.20560 6.82932 7.36884 8.89850 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.029297 B = 0.003707 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.492988 B = 7550.810971 C = 7679.884369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.120 4.120 3 C -0.063 4.063 4 C -0.141 4.141 5 C -0.004 4.004 6 C -0.186 4.186 7 C -0.666 4.666 8 S 2.498 3.502 9 O -0.974 6.974 10 O -0.964 6.964 11 C -0.586 4.586 12 C -0.107 4.107 13 C 0.031 3.969 14 C -0.553 4.553 15 H 0.061 0.939 16 C 0.004 3.996 17 N -0.929 5.929 18 Si 0.962 3.038 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.267 1.267 22 C -0.045 4.045 23 H 0.082 0.918 24 H 0.069 0.931 25 H 0.088 0.912 26 H 0.164 0.836 27 H 0.161 0.839 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.153 0.847 32 H 0.148 0.852 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.004 0.996 36 H 0.007 0.993 37 H 0.265 0.735 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.534 15.009 9.948 22.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.122 4.122 3 C -0.080 4.080 4 C -0.160 4.160 5 C -0.005 4.005 6 C -0.242 4.242 7 C -0.755 4.755 8 S 2.685 3.315 9 O -0.972 6.972 10 O -0.962 6.962 11 C -0.717 4.717 12 C -0.146 4.146 13 C -0.007 4.007 14 C -0.591 4.591 15 H 0.079 0.921 16 C -0.194 4.194 17 N -0.569 5.569 18 Si 0.786 3.214 19 H -0.193 1.193 20 H -0.207 1.207 21 H -0.192 1.192 22 C -0.064 4.064 23 H 0.101 0.899 24 H 0.088 0.912 25 H 0.107 0.893 26 H 0.182 0.818 27 H 0.178 0.822 28 H 0.119 0.881 29 H 0.126 0.874 30 H 0.105 0.895 31 H 0.171 0.829 32 H 0.166 0.834 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.022 0.978 36 H 0.026 0.974 37 H 0.074 0.926 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.486 14.422 10.479 22.354 hybrid contribution 0.552 -0.276 -0.902 1.093 sum -12.934 14.145 9.577 21.427 Atomic orbital electron populations 1.20879 0.88479 1.04134 1.03600 1.20404 0.98140 0.92629 1.00977 1.21780 0.94285 0.98753 0.93204 1.21568 0.94939 0.98066 1.01384 1.19839 0.96534 0.92203 0.91972 1.21812 0.90017 1.07225 1.05147 1.30098 1.06307 1.18237 1.20837 1.05067 0.74620 0.74216 0.77609 1.93468 1.57636 1.58606 1.87471 1.93469 1.64671 1.86242 1.51784 1.30271 1.13183 1.08131 1.20116 1.21383 0.98501 0.93402 1.01307 1.18965 0.94338 0.96061 0.91344 1.21710 1.28619 1.05581 1.03228 0.92092 1.25917 0.97824 1.00327 0.95366 1.70061 1.42048 1.37044 1.07755 0.85545 0.78813 0.79448 0.77551 1.19295 1.20661 1.19187 1.21063 0.91793 1.00066 0.93492 0.89922 0.91197 0.89311 0.81835 0.82156 0.88105 0.87355 0.89491 0.82949 0.83358 0.91000 0.91407 0.97797 0.97426 0.92631 0.84261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 10.01 71.23 0.71 -0.73 16 2 C -0.12 -2.29 5.88 -19.87 -0.12 -2.41 16 3 C -0.06 -0.99 9.70 22.27 0.22 -0.77 16 4 C -0.14 -2.49 9.70 22.27 0.22 -2.27 16 5 C 0.00 -0.10 5.86 -19.87 -0.12 -0.22 16 6 C -0.19 -3.92 8.46 71.23 0.60 -3.31 16 7 C -0.67 -17.97 5.58 22.27 0.12 -17.84 16 8 S 2.50 79.14 4.56 -56.49 -0.26 78.88 16 9 O -0.97 -35.79 16.74 -127.65 -2.14 -37.93 16 10 O -0.96 -34.58 15.36 -127.65 -1.96 -36.54 16 11 C -0.59 -18.30 5.77 71.98 0.42 -17.89 16 12 C -0.11 -4.36 5.16 30.60 0.16 -4.20 16 13 C 0.03 1.60 4.97 29.85 0.15 1.75 16 14 C -0.55 -31.32 9.11 25.60 0.23 -31.09 16 15 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 16 C 0.00 0.23 5.46 84.66 0.46 0.69 16 17 N -0.93 -55.43 13.29 21.45 0.28 -55.14 16 18 Si 0.96 43.99 29.54 68.60 2.03 46.02 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 22 C -0.05 -1.13 9.16 22.27 0.20 -0.92 16 23 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.07 0.89 8.09 -2.39 -0.02 0.87 16 25 H 0.09 0.74 8.09 -2.39 -0.02 0.73 16 26 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 27 H 0.16 1.80 8.06 -2.91 -0.02 1.77 16 28 H 0.10 1.83 7.10 -2.39 -0.02 1.81 16 29 H 0.11 1.71 8.09 -2.38 -0.02 1.69 16 30 H 0.09 2.22 4.90 -2.39 -0.01 2.21 16 31 H 0.15 4.09 6.01 -2.39 -0.01 4.08 16 32 H 0.15 4.13 8.14 -2.39 -0.02 4.11 16 33 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 34 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 36 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 37 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 38 H 0.14 3.46 7.21 -2.91 -0.02 3.44 16 Total: -1.00 -73.81 326.13 2.26 -71.55 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 1.04 Total: 12.37 kcal Atomic # 6 Polarization: -82.47 SS G_CDS: 3.26 Total: -79.21 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: 0.28 Total: -55.14 kcal Atomic # 8 Polarization: -70.37 SS G_CDS: -4.10 Total: -74.47 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: 79.14 SS G_CDS: -0.26 Total: 78.88 kcal Total: -73.81 2.26 -71.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105723182.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.999 kcal (2) G-P(sol) polarization free energy of solvation -73.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds