Wall clock time and date at job start Tue Mar 31 2020 05:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36887 * 126.39974 * 2 1 4 4 Cl 1.73597 * 126.59748 * 0.02562 * 3 2 1 5 5 C 1.34797 * 106.80025 * 180.02562 * 3 2 1 6 6 N 1.34161 * 108.01791 * 0.02562 * 5 3 2 7 7 C 1.30476 * 109.27184 * 359.97438 * 6 5 3 8 8 C 1.50698 * 125.64736 * 180.26252 * 7 6 5 9 9 N 1.46899 * 109.47128 * 269.69569 * 8 7 6 10 10 C 1.46902 * 110.99819 * 169.99931 * 9 8 7 11 11 C 1.50699 * 109.47132 * 284.13971 * 10 9 8 12 12 H 1.08006 * 120.00055 * 4.64724 * 11 10 9 13 13 C 1.37877 * 119.99950 * 184.65253 * 11 10 9 14 14 N 1.31515 * 120.00245 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99948 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47555 * 89.99808 * 15 13 11 17 17 H 1.48510 * 109.47034 * 210.00086 * 15 13 11 18 18 H 1.48497 * 109.47126 * 329.99528 * 15 13 11 19 19 C 1.46890 * 111.00225 * 293.95364 * 9 8 7 20 20 C 1.53002 * 109.47553 * 167.77401 * 19 9 8 21 21 C 1.47200 * 109.47486 * 179.42796 * 20 19 9 22 22 N 5.67204 * 60.53230 * 254.67220 * 2 1 3 23 23 H 1.08999 * 109.47015 * 269.97617 * 1 2 3 24 24 H 1.08999 * 109.47045 * 29.97271 * 1 2 3 25 25 H 1.08993 * 109.47338 * 149.96957 * 1 2 3 26 26 H 1.08003 * 125.98876 * 179.97438 * 5 3 2 27 27 H 1.09006 * 109.46855 * 29.69751 * 8 7 6 28 28 H 1.09000 * 109.47135 * 149.69285 * 8 7 6 29 29 H 1.08995 * 109.47244 * 44.13739 * 10 9 8 30 30 H 1.08996 * 109.47274 * 164.13800 * 10 9 8 31 31 H 0.96994 * 120.00512 * 180.02562 * 14 13 11 32 32 H 1.08999 * 109.47284 * 287.77590 * 19 9 8 33 33 H 1.09006 * 109.47622 * 47.77335 * 19 9 8 34 34 H 1.09007 * 109.46519 * 299.43007 * 20 19 9 35 35 H 1.08998 * 109.46785 * 59.42339 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 17 1.7696 2.7619 0.0006 5 6 3.5471 0.6496 -0.0006 6 7 3.5101 -0.6915 -0.0015 7 6 2.2670 -1.0880 -0.0010 8 6 1.8024 -2.5215 0.0040 9 7 1.6455 -2.9901 -1.3794 10 6 1.4252 -4.4419 -1.4216 11 6 2.7295 -5.1553 -1.1750 12 1 3.6164 -4.5898 -0.9298 13 6 2.7907 -6.5300 -1.2624 14 7 1.7106 -7.2187 -1.5606 15 14 4.4076 -7.4142 -0.9574 16 1 4.5244 -7.7490 0.4846 17 1 4.4481 -8.6629 -1.7604 18 1 5.5357 -6.5339 -1.3542 19 6 0.5581 -2.2727 -2.0581 20 6 0.6185 -2.5577 -3.5601 21 6 -0.4794 -1.8498 -4.2385 22 7 -1.3253 -1.3054 -4.7626 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3633 -0.8896 -0.5143 26 1 4.4382 1.2600 -0.0011 27 1 2.5393 -3.1405 0.5159 28 1 0.8460 -2.5917 0.5221 29 1 0.7063 -4.7228 -0.6520 30 1 1.0372 -4.7223 -2.4008 31 1 1.7535 -8.1857 -1.6218 32 1 -0.4007 -2.6082 -1.6629 33 1 0.6669 -1.2017 -1.8869 34 1 1.5734 -2.2129 -3.9572 35 1 0.5199 -3.6297 -3.7307 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176109964.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:39 Heat of formation + Delta-G solvation = 95.325555 kcal Electronic energy + Delta-G solvation = -19748.095963 eV Core-core repulsion = 16615.898106 eV Total energy + Delta-G solvation = -3132.197857 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.14245 -37.71627 -36.82204 -36.20257 -34.12401 -32.73639 -31.63679 -29.69866 -27.33909 -27.05690 -25.21201 -23.35803 -21.47547 -20.88751 -19.43095 -17.67340 -17.12519 -16.63522 -16.05425 -15.13047 -15.11006 -14.79862 -14.39318 -14.07423 -13.81303 -13.56198 -13.29786 -12.98286 -12.70274 -12.61364 -12.30450 -12.13402 -11.88867 -11.64837 -11.47831 -11.43451 -11.11269 -10.89765 -10.72357 -10.45202 -9.90159 -9.85024 -9.62914 -9.36635 -8.49836 -8.25189 -7.60189 -6.09804 -4.11072 1.58606 1.84449 2.85689 2.88042 2.93661 3.14388 3.31855 3.38977 3.44876 4.06885 4.41180 4.52885 4.56756 4.88632 4.93984 5.05491 5.17179 5.19514 5.27874 5.33498 5.45572 5.61853 5.71533 5.99587 6.07861 6.13650 6.21292 6.53085 6.89780 7.03289 7.09413 7.65849 7.67559 7.80517 7.98528 8.12893 8.34002 8.98078 9.54580 11.00508 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.015581 B = 0.005210 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.685204 B = 5373.150908 C = 6715.780723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.456 5.456 3 C 0.000 4.000 4 Cl -0.020 7.020 5 C 0.009 3.991 6 N -0.461 5.461 7 C 0.252 3.748 8 C 0.146 3.854 9 N -0.523 5.523 10 C 0.189 3.811 11 C -0.508 4.508 12 H 0.069 0.931 13 C 0.058 3.942 14 N -0.900 5.900 15 Si 0.897 3.103 16 H -0.281 1.281 17 H -0.288 1.288 18 H -0.271 1.271 19 C 0.051 3.949 20 C -0.029 4.029 21 C 0.219 3.781 22 N -0.456 5.456 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.099 0.901 26 H 0.176 0.824 27 H 0.123 0.877 28 H 0.043 0.957 29 H -0.004 1.004 30 H 0.043 0.957 31 H 0.262 0.738 32 H 0.036 0.964 33 H 0.066 0.934 34 H 0.117 0.883 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.303 14.231 3.649 14.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.142 5.142 3 C -0.140 4.140 4 Cl 0.007 6.993 5 C -0.142 4.142 6 N -0.179 5.179 7 C -0.010 4.010 8 C 0.016 3.984 9 N -0.248 5.248 10 C 0.065 3.935 11 C -0.546 4.546 12 H 0.088 0.912 13 C -0.143 4.143 14 N -0.539 5.539 15 Si 0.725 3.275 16 H -0.208 1.208 17 H -0.214 1.214 18 H -0.195 1.195 19 C -0.079 4.079 20 C -0.069 4.069 21 C -0.099 4.099 22 N -0.134 5.134 23 H 0.099 0.901 24 H 0.105 0.895 25 H 0.117 0.883 26 H 0.194 0.806 27 H 0.141 0.859 28 H 0.061 0.939 29 H 0.014 0.986 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.135 0.865 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.719 14.579 2.580 15.053 hybrid contribution -0.476 -0.101 0.712 0.863 sum -3.195 14.478 3.293 15.188 Atomic orbital electron populations 1.22339 0.76678 1.05477 1.04178 1.45260 1.07611 1.05708 1.55619 1.21699 0.91400 0.81870 1.19045 1.98356 1.91863 1.11368 1.97665 1.22196 0.94160 0.91476 1.06370 1.70516 1.18467 1.09827 1.19119 1.23550 0.85175 0.90235 1.02077 1.20456 1.00660 0.85359 0.91928 1.62072 1.41129 1.08616 1.12991 1.19921 0.97345 0.78702 0.97491 1.21162 0.95511 0.90918 1.47055 0.91247 1.24950 0.96590 0.97553 0.95248 1.69933 1.27975 1.07076 1.48934 0.86504 0.83931 0.79006 0.78084 1.20756 1.21418 1.19539 1.22185 0.94183 0.98827 0.92744 1.19396 0.92409 1.01056 0.94039 1.29371 0.94137 0.93067 0.93320 1.81094 1.11605 1.10728 1.09960 0.90083 0.89528 0.88271 0.80636 0.85924 0.93939 0.98638 0.93887 0.92853 0.94630 0.91561 0.86512 0.86053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.55 9.76 59.85 0.58 1.13 16 2 N -0.46 -6.00 2.75 -117.77 -0.32 -6.33 16 3 C 0.00 0.00 7.49 -16.51 -0.12 -0.13 16 4 Cl -0.02 -0.22 28.93 -51.86 -1.50 -1.72 16 5 C 0.01 0.12 11.86 -17.75 -0.21 -0.09 16 6 N -0.46 -7.91 11.25 -10.76 -0.12 -8.03 16 7 C 0.25 3.96 6.59 -155.32 -1.02 2.93 16 8 C 0.15 2.38 5.00 -4.98 -0.02 2.36 16 9 N -0.52 -9.23 4.40 -237.52 -1.04 -10.28 16 10 C 0.19 4.11 4.61 -4.98 -0.02 4.09 16 11 C -0.51 -12.72 8.61 -34.44 -0.30 -13.02 16 12 H 0.07 1.78 7.67 -52.48 -0.40 1.37 16 13 C 0.06 1.51 5.46 -17.82 -0.10 1.42 16 14 N -0.90 -24.53 13.29 55.43 0.74 -23.79 16 15 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 19 C 0.05 0.72 3.43 -3.83 -0.01 0.71 16 20 C -0.03 -0.39 5.72 -29.52 -0.17 -0.56 16 21 C 0.22 3.10 15.43 -20.82 -0.32 2.78 16 22 N -0.46 -7.39 18.53 42.09 0.78 -6.61 16 23 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.09 0.76 7.92 -51.93 -0.41 0.35 16 25 H 0.10 0.97 4.71 -51.93 -0.24 0.73 16 26 H 0.18 2.04 8.06 -52.48 -0.42 1.62 16 27 H 0.12 2.25 7.34 -51.93 -0.38 1.87 16 28 H 0.04 0.61 7.70 -51.93 -0.40 0.21 16 29 H 0.00 -0.10 8.00 -51.93 -0.42 -0.51 16 30 H 0.04 0.97 6.00 -51.93 -0.31 0.66 16 31 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.04 0.48 7.72 -51.93 -0.40 0.08 16 33 H 0.07 0.89 4.65 -51.93 -0.24 0.65 16 34 H 0.12 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.12 1.72 6.33 -51.93 -0.33 1.39 16 LS Contribution 314.66 15.07 4.74 4.74 Total: -1.00 -29.22 314.66 -7.41 -36.63 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -3.94 Total: -1.68 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -1.72 Total: 1.62 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: 0.03 Total: -55.04 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -1.50 Total: -1.72 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.22 -7.41 -36.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176109964.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.955 kcal (2) G-P(sol) polarization free energy of solvation -29.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds