Wall clock time and date at job start Tue Mar 31 2020 05:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38256 * 120.00325 * 2 1 4 4 C 1.38211 * 120.00062 * 180.25725 * 3 2 1 5 5 C 1.38258 * 119.99774 * 359.52161 * 4 3 2 6 6 C 1.50707 * 119.99972 * 180.23526 * 5 4 3 7 7 C 1.38211 * 120.00201 * 0.41152 * 5 4 3 8 8 C 1.50706 * 120.00280 * 179.82644 * 7 5 4 9 9 S 1.81398 * 109.47213 * 270.02196 * 8 7 5 10 10 O 1.42097 * 108.57720 * 294.48469 * 9 8 7 11 11 O 1.42105 * 108.57905 * 65.51103 * 9 8 7 12 12 C 1.81399 * 101.91990 * 179.97438 * 9 8 7 13 13 C 1.52995 * 109.46887 * 180.02562 * 12 9 8 14 14 C 1.50706 * 109.47214 * 179.97438 * 13 12 9 15 15 H 1.07997 * 119.99529 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00380 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99909 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00088 * 180.02562 * 16 14 13 19 19 H 1.48490 * 109.47111 * 60.00322 * 18 16 14 20 20 H 1.48499 * 109.46708 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47070 * 300.00115 * 18 16 14 22 22 C 1.38215 * 119.99534 * 179.97438 * 2 1 3 23 23 H 1.09002 * 109.46776 * 89.99934 * 1 2 3 24 24 H 1.08993 * 109.47429 * 210.00606 * 1 2 3 25 25 H 1.08998 * 109.46961 * 330.00857 * 1 2 3 26 26 H 1.08002 * 119.99676 * 359.97122 * 3 2 1 27 27 H 1.07998 * 120.00348 * 179.72205 * 4 3 2 28 28 H 1.09004 * 109.47201 * 270.17114 * 6 5 4 29 29 H 1.08996 * 109.46896 * 30.17288 * 6 5 4 30 30 H 1.08999 * 109.46646 * 150.17148 * 6 5 4 31 31 H 1.09003 * 109.46716 * 30.02175 * 8 7 5 32 32 H 1.08993 * 109.46977 * 150.01843 * 8 7 5 33 33 H 1.09004 * 109.46819 * 299.99494 * 12 9 8 34 34 H 1.09000 * 109.47007 * 59.99694 * 12 9 8 35 35 H 1.09001 * 109.47517 * 299.99879 * 13 12 9 36 36 H 1.09000 * 109.47565 * 60.00013 * 13 12 9 37 37 H 0.96996 * 120.00048 * 180.02562 * 17 16 14 38 38 H 1.07996 * 120.00479 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0054 5 6 4.2717 -0.0001 -0.0008 6 6 5.7787 -0.0002 -0.0013 7 6 3.5806 -1.1971 0.0006 8 6 4.3340 -2.5023 0.0017 9 16 4.6364 -3.0274 -1.7081 10 8 3.3871 -3.3156 -2.3208 11 8 5.5104 -2.0898 -2.3218 12 6 5.5361 -4.5842 -1.4684 13 6 5.8843 -5.1869 -2.8308 14 6 6.6323 -6.4800 -2.6317 15 1 6.8383 -6.8364 -1.6333 16 6 7.0527 -7.2085 -3.7242 17 7 6.8014 -6.7747 -4.9401 18 14 7.9793 -8.8116 -3.4774 19 1 7.1290 -9.7628 -2.7176 20 1 8.3173 -9.3965 -4.7998 21 1 9.2286 -8.5495 -2.7186 22 6 2.1980 -1.1970 0.0005 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8898 0.5139 25 1 -0.3633 0.8900 0.5137 26 1 1.6584 2.1326 -0.0005 27 1 4.1205 2.1325 -0.0099 28 1 6.1418 -0.0013 -1.0291 29 1 6.1422 0.8902 0.5115 30 1 6.1421 -0.8897 0.5134 31 1 5.2865 -2.3715 0.5155 32 1 3.7449 -3.2614 0.5162 33 1 6.4532 -4.3917 -0.9115 34 1 4.9120 -5.2823 -0.9105 35 1 4.9675 -5.3792 -3.3881 36 1 6.5086 -4.4886 -3.3882 37 1 7.0969 -7.2874 -5.7087 38 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180314331.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:11 Heat of formation + Delta-G solvation = -69.015388 kcal Electronic energy + Delta-G solvation = -19778.391266 eV Core-core repulsion = 16712.358350 eV Total energy + Delta-G solvation = -3066.032916 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.78438 -36.44299 -35.47959 -34.45423 -33.87051 -32.48511 -31.17487 -29.36392 -27.77958 -25.57035 -24.85665 -22.41285 -21.53537 -20.24337 -18.36259 -16.97698 -16.28498 -16.09167 -15.84743 -15.38730 -15.31916 -14.70975 -14.51625 -13.98065 -13.52417 -13.41107 -13.19143 -13.05720 -12.87663 -12.49386 -12.35823 -12.04593 -11.79766 -11.74317 -11.48663 -11.42913 -11.10653 -11.07416 -11.05509 -10.93949 -10.73208 -10.36947 -10.35283 -9.69906 -9.20465 -8.78252 -8.48585 -8.42670 -6.10777 -4.16866 0.32668 1.26887 1.33865 3.27657 3.27764 3.32671 3.34294 3.60715 4.01752 4.29416 4.36635 4.52985 4.70154 4.76383 4.90814 5.00491 5.08183 5.24052 5.26224 5.39120 5.45786 5.48438 5.59481 5.65670 5.67361 5.69582 5.75648 5.92389 5.98481 6.22216 6.30342 6.47428 6.48805 6.51681 6.90869 7.35023 7.40790 7.81555 8.18485 8.86468 9.47576 11.00087 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.035310 B = 0.003780 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.793613 B = 7404.981819 C = 7735.928231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.095 4.095 3 C -0.113 4.113 4 C -0.118 4.118 5 C -0.072 4.072 6 C -0.131 4.131 7 C -0.080 4.080 8 C -0.586 4.586 9 S 2.397 3.603 10 O -0.940 6.940 11 O -0.937 6.937 12 C -0.575 4.575 13 C 0.029 3.971 14 C -0.523 4.523 15 H 0.061 0.939 16 C 0.058 3.942 17 N -0.889 5.889 18 Si 0.900 3.100 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.101 4.101 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.123 0.877 27 H 0.126 0.874 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.035 0.965 36 H 0.036 0.964 37 H 0.266 0.734 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.894 13.973 13.244 20.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.095 4.095 3 C -0.131 4.131 4 C -0.136 4.136 5 C -0.073 4.073 6 C -0.187 4.187 7 C -0.081 4.081 8 C -0.710 4.710 9 S 2.582 3.418 10 O -0.937 6.937 11 O -0.935 6.935 12 C -0.707 4.707 13 C -0.010 4.010 14 C -0.562 4.562 15 H 0.079 0.921 16 C -0.145 4.145 17 N -0.527 5.527 18 Si 0.727 3.273 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.120 4.120 23 H 0.091 0.909 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.141 0.859 27 H 0.144 0.856 28 H 0.113 0.887 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.158 0.842 32 H 0.156 0.844 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.133 14.382 12.290 20.592 hybrid contribution 0.723 -1.315 0.916 1.758 sum -7.409 13.067 13.206 20.001 Atomic orbital electron populations 1.20784 0.90960 1.02640 1.02606 1.19870 0.96248 0.92900 1.00446 1.21056 0.94161 0.97510 1.00414 1.20986 0.94134 0.97346 1.01154 1.19839 0.96534 0.92388 0.98533 1.21061 0.90730 1.02584 1.04347 1.18811 0.93388 0.91978 1.03948 1.29609 1.09543 1.04049 1.27762 1.08951 0.76728 0.78887 0.77266 1.93534 1.42915 1.85100 1.72189 1.93522 1.66578 1.61169 1.72189 1.30255 1.12271 1.16948 1.11237 1.18978 0.98465 0.97085 0.86430 1.20987 1.36730 1.05533 0.92971 0.92089 1.25068 0.96022 0.98232 0.95129 1.69953 1.45932 1.39008 0.97847 0.86528 0.80169 0.83122 0.77441 1.20073 1.21060 1.20074 1.21022 0.93027 0.98411 0.99509 0.90923 0.91449 0.91627 0.85899 0.85636 0.88741 0.91365 0.91391 0.84179 0.84444 0.86164 0.86220 0.94676 0.94601 0.92468 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.01 36.01 0.36 -0.64 16 2 C -0.09 -1.11 5.88 -104.62 -0.62 -1.73 16 3 C -0.11 -1.24 9.70 -39.58 -0.38 -1.62 16 4 C -0.12 -1.37 9.70 -39.58 -0.38 -1.75 16 5 C -0.07 -0.95 5.88 -104.62 -0.62 -1.56 16 6 C -0.13 -1.53 9.31 36.01 0.34 -1.19 16 7 C -0.08 -1.11 5.14 -104.62 -0.54 -1.65 16 8 C -0.59 -7.40 5.53 36.01 0.20 -7.20 16 9 S 2.40 42.40 4.70 -107.50 -0.51 41.90 16 10 O -0.94 -19.71 18.10 -57.83 -1.05 -20.76 16 11 O -0.94 -18.98 17.08 -57.83 -0.99 -19.97 16 12 C -0.57 -10.76 5.74 37.15 0.21 -10.55 16 13 C 0.03 0.75 4.98 -27.88 -0.14 0.61 16 14 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 18 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 C -0.10 -1.34 9.36 -39.58 -0.37 -1.71 16 23 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 25 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 26 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 27 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 28 H 0.09 1.25 7.42 -51.93 -0.39 0.86 16 29 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 30 H 0.07 0.71 5.95 -51.93 -0.31 0.40 16 31 H 0.14 1.41 5.95 -51.92 -0.31 1.10 16 32 H 0.14 1.35 8.08 -51.93 -0.42 0.93 16 33 H 0.12 1.94 8.14 -51.92 -0.42 1.52 16 34 H 0.12 1.95 8.14 -51.92 -0.42 1.53 16 35 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 38 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 332.42 15.07 5.01 5.01 Total: -1.00 -35.38 332.42 -9.77 -45.15 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -5.61 Total: 0.65 kcal Atomic # 6 Polarization: -39.90 SS G_CDS: -2.35 Total: -42.24 kcal Atomic # 7 Polarization: -26.63 SS G_CDS: 0.74 Total: -25.89 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -2.03 Total: -40.73 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 42.40 SS G_CDS: -0.51 Total: 41.90 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.38 -9.77 -45.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180314331.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.865 kcal (2) G-P(sol) polarization free energy of solvation -35.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds