Wall clock time and date at job start Tue Mar 31 2020 05:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38256 * 120.00325 * 2 1 4 4 C 1.38211 * 120.00062 * 180.25725 * 3 2 1 5 5 C 1.38258 * 119.99774 * 359.52161 * 4 3 2 6 6 C 1.50707 * 119.99972 * 180.23526 * 5 4 3 7 7 C 1.38211 * 120.00201 * 0.41152 * 5 4 3 8 8 C 1.50706 * 120.00280 * 179.82644 * 7 5 4 9 9 S 1.81398 * 109.47213 * 270.02196 * 8 7 5 10 10 O 1.42097 * 108.57720 * 294.48469 * 9 8 7 11 11 O 1.42105 * 108.57905 * 65.51103 * 9 8 7 12 12 C 1.81399 * 101.91990 * 179.97438 * 9 8 7 13 13 C 1.52995 * 109.46887 * 180.02562 * 12 9 8 14 14 C 1.50706 * 109.47214 * 179.97438 * 13 12 9 15 15 H 1.07997 * 119.99529 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00380 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99909 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00088 * 180.02562 * 16 14 13 19 19 H 1.48490 * 109.47111 * 60.00322 * 18 16 14 20 20 H 1.48499 * 109.46708 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47070 * 300.00115 * 18 16 14 22 22 C 1.38215 * 119.99534 * 179.97438 * 2 1 3 23 23 H 1.09002 * 109.46776 * 89.99934 * 1 2 3 24 24 H 1.08993 * 109.47429 * 210.00606 * 1 2 3 25 25 H 1.08998 * 109.46961 * 330.00857 * 1 2 3 26 26 H 1.08002 * 119.99676 * 359.97122 * 3 2 1 27 27 H 1.07998 * 120.00348 * 179.72205 * 4 3 2 28 28 H 1.09004 * 109.47201 * 270.17114 * 6 5 4 29 29 H 1.08996 * 109.46896 * 30.17288 * 6 5 4 30 30 H 1.08999 * 109.46646 * 150.17148 * 6 5 4 31 31 H 1.09003 * 109.46716 * 30.02175 * 8 7 5 32 32 H 1.08993 * 109.46977 * 150.01843 * 8 7 5 33 33 H 1.09004 * 109.46819 * 299.99494 * 12 9 8 34 34 H 1.09000 * 109.47007 * 59.99694 * 12 9 8 35 35 H 1.09001 * 109.47517 * 299.99879 * 13 12 9 36 36 H 1.09000 * 109.47565 * 60.00013 * 13 12 9 37 37 H 0.96996 * 120.00048 * 180.02562 * 17 16 14 38 38 H 1.07996 * 120.00479 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0054 5 6 4.2717 -0.0001 -0.0008 6 6 5.7787 -0.0002 -0.0013 7 6 3.5806 -1.1971 0.0006 8 6 4.3340 -2.5023 0.0017 9 16 4.6364 -3.0274 -1.7081 10 8 3.3871 -3.3156 -2.3208 11 8 5.5104 -2.0898 -2.3218 12 6 5.5361 -4.5842 -1.4684 13 6 5.8843 -5.1869 -2.8308 14 6 6.6323 -6.4800 -2.6317 15 1 6.8383 -6.8364 -1.6333 16 6 7.0527 -7.2085 -3.7242 17 7 6.8014 -6.7747 -4.9401 18 14 7.9793 -8.8116 -3.4774 19 1 7.1290 -9.7628 -2.7176 20 1 8.3173 -9.3965 -4.7998 21 1 9.2286 -8.5495 -2.7186 22 6 2.1980 -1.1970 0.0005 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8898 0.5139 25 1 -0.3633 0.8900 0.5137 26 1 1.6584 2.1326 -0.0005 27 1 4.1205 2.1325 -0.0099 28 1 6.1418 -0.0013 -1.0291 29 1 6.1422 0.8902 0.5115 30 1 6.1421 -0.8897 0.5134 31 1 5.2865 -2.3715 0.5155 32 1 3.7449 -3.2614 0.5162 33 1 6.4532 -4.3917 -0.9115 34 1 4.9120 -5.2823 -0.9105 35 1 4.9675 -5.3792 -3.3881 36 1 6.5086 -4.4886 -3.3882 37 1 7.0969 -7.2874 -5.7087 38 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180314331.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:11 Heat of formation + Delta-G solvation = -92.581634 kcal Electronic energy + Delta-G solvation = -19779.413175 eV Core-core repulsion = 16712.358350 eV Total energy + Delta-G solvation = -3067.054825 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.67186 -37.94989 -36.98076 -35.87160 -35.32915 -33.41051 -33.12196 -30.15675 -28.83528 -27.49059 -25.68270 -23.72737 -23.01682 -21.22929 -19.78817 -18.84933 -17.49031 -17.37081 -17.10792 -16.63203 -16.57317 -16.42369 -15.72403 -15.15349 -14.86948 -14.46664 -14.28772 -14.06274 -13.93049 -13.73339 -13.70000 -13.22106 -13.06921 -13.00598 -12.88265 -12.77876 -12.76114 -12.63929 -12.20402 -12.11620 -11.97650 -11.94540 -11.90906 -11.63862 -11.00360 -10.63653 -9.74769 -9.34917 -8.25263 -6.40338 -1.03882 0.36072 0.40866 1.40770 1.44911 1.53028 1.93611 2.38214 2.63529 2.81962 3.07069 3.08802 3.43438 3.72637 3.94405 3.99543 4.06619 4.10934 4.20072 4.29137 4.40877 4.53207 4.68917 4.78356 4.80242 4.82917 4.86229 4.89537 5.09873 5.18446 5.29450 5.30102 5.37690 5.40927 5.59631 5.62272 5.68878 6.04648 6.05979 6.74210 7.30040 8.86962 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.035310 B = 0.003780 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.793613 B = 7404.981819 C = 7735.928231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.106 4.106 3 C -0.112 4.112 4 C -0.127 4.127 5 C -0.089 4.089 6 C -0.136 4.136 7 C -0.110 4.110 8 C -0.548 4.548 9 S 2.394 3.606 10 O -0.985 6.985 11 O -0.975 6.975 12 C -0.578 4.578 13 C 0.021 3.979 14 C -0.542 4.542 15 H 0.080 0.920 16 C -0.007 4.007 17 N -0.936 5.936 18 Si 0.976 3.024 19 H -0.262 1.262 20 H -0.285 1.285 21 H -0.261 1.261 22 C -0.121 4.121 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.152 0.848 27 H 0.149 0.851 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.173 0.827 32 H 0.173 0.827 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.001 0.999 36 H 0.003 0.997 37 H 0.267 0.733 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.001 14.405 16.300 23.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.106 4.106 3 C -0.131 4.131 4 C -0.145 4.145 5 C -0.090 4.090 6 C -0.192 4.192 7 C -0.111 4.111 8 C -0.678 4.678 9 S 2.584 3.416 10 O -0.982 6.982 11 O -0.972 6.972 12 C -0.709 4.709 13 C -0.018 4.018 14 C -0.581 4.581 15 H 0.098 0.902 16 C -0.205 4.205 17 N -0.576 5.576 18 Si 0.800 3.200 19 H -0.186 1.186 20 H -0.211 1.211 21 H -0.186 1.186 22 C -0.140 4.140 23 H 0.091 0.909 24 H 0.092 0.908 25 H 0.104 0.896 26 H 0.170 0.830 27 H 0.167 0.833 28 H 0.091 0.909 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.191 0.809 32 H 0.191 0.809 33 H 0.167 0.833 34 H 0.165 0.835 35 H 0.019 0.981 36 H 0.022 0.978 37 H 0.076 0.924 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.217 14.773 15.297 22.798 hybrid contribution 0.657 -1.272 0.038 1.432 sum -7.559 13.501 15.335 21.785 Atomic orbital electron populations 1.20848 0.89098 1.04042 1.02990 1.20282 0.97835 0.92760 0.99744 1.21476 0.94253 0.98513 0.98826 1.21379 0.94744 0.97912 1.00422 1.20159 0.97336 0.92855 0.98651 1.21126 0.90087 1.04494 1.03463 1.19033 0.93924 0.92451 1.05697 1.29237 1.12074 1.04744 1.21700 1.08684 0.75296 0.77846 0.79740 1.93471 1.44047 1.85469 1.75256 1.93471 1.67244 1.61377 1.75087 1.30150 1.14692 1.18560 1.07500 1.18804 0.96251 0.96782 0.89934 1.21553 1.36412 1.06198 0.93888 0.90225 1.26182 0.97072 1.02497 0.94716 1.70122 1.47559 1.40927 0.98991 0.85330 0.79087 0.78098 0.77531 1.18622 1.21073 1.18563 1.21317 0.93239 0.99480 0.99991 0.90932 0.90827 0.89558 0.83038 0.83284 0.90916 0.88924 0.90217 0.80924 0.80933 0.83264 0.83537 0.98110 0.97832 0.92437 0.84779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.75 10.01 71.24 0.71 -1.03 16 2 C -0.11 -2.29 5.88 -19.86 -0.12 -2.41 16 3 C -0.11 -2.18 9.70 22.27 0.22 -1.96 16 4 C -0.13 -2.64 9.70 22.27 0.22 -2.43 16 5 C -0.09 -2.17 5.88 -19.86 -0.12 -2.29 16 6 C -0.14 -2.92 9.31 71.24 0.66 -2.26 16 7 C -0.11 -2.85 5.14 -19.86 -0.10 -2.95 16 8 C -0.55 -12.50 5.53 71.24 0.39 -12.11 16 9 S 2.39 85.56 4.70 -56.49 -0.27 85.29 16 10 O -0.99 -42.90 18.10 -127.37 -2.31 -45.20 16 11 O -0.97 -40.93 17.08 -127.37 -2.18 -43.10 16 12 C -0.58 -21.51 5.74 71.98 0.41 -21.10 16 13 C 0.02 1.11 4.98 29.85 0.15 1.26 16 14 C -0.54 -30.37 9.11 25.60 0.23 -30.13 16 15 H 0.08 4.04 7.74 -2.91 -0.02 4.01 16 16 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 17 N -0.94 -58.23 13.29 21.45 0.28 -57.95 16 18 Si 0.98 43.51 29.54 68.60 2.03 45.53 16 19 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 20 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 22 C -0.12 -3.04 9.36 22.27 0.21 -2.84 16 23 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.07 1.03 8.08 -2.39 -0.02 1.01 16 25 H 0.09 0.96 8.09 -2.39 -0.02 0.94 16 26 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 27 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 28 H 0.07 1.90 7.42 -2.39 -0.02 1.89 16 29 H 0.09 1.47 8.09 -2.39 -0.02 1.45 16 30 H 0.08 1.46 5.95 -2.39 -0.01 1.44 16 31 H 0.17 2.83 5.95 -2.39 -0.01 2.81 16 32 H 0.17 2.76 8.08 -2.39 -0.02 2.74 16 33 H 0.15 4.57 8.14 -2.39 -0.02 4.55 16 34 H 0.15 4.56 8.14 -2.39 -0.02 4.54 16 35 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 36 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 37 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 38 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -81.27 332.42 1.93 -79.34 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 1.04 Total: 16.24 kcal Atomic # 6 Polarization: -83.49 SS G_CDS: 3.33 Total: -80.16 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: 0.28 Total: -57.95 kcal Atomic # 8 Polarization: -83.82 SS G_CDS: -4.48 Total: -88.30 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: 85.56 SS G_CDS: -0.27 Total: 85.29 kcal Total: -81.27 1.93 -79.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180314331.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.241 kcal (2) G-P(sol) polarization free energy of solvation -81.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds