Wall clock time and date at job start Tue Mar 31 2020 05:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00178 * 2 1 4 4 H 1.48502 * 109.47206 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47192 * 300.00109 * 3 2 1 6 6 H 1.48497 * 109.47136 * 60.00186 * 3 2 1 7 7 C 1.37879 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00481 * 185.16172 * 7 2 1 9 9 C 1.50704 * 119.99582 * 5.15534 * 7 2 1 10 10 H 1.08994 * 109.47401 * 24.88288 * 9 7 2 11 11 O 1.45205 * 109.46863 * 144.88137 * 9 7 2 12 12 C 1.34704 * 116.99945 * 270.00033 * 11 9 7 13 13 O 1.21472 * 120.00027 * 359.97438 * 12 11 9 14 14 C 1.47727 * 120.00058 * 180.02562 * 12 11 9 15 15 C 1.39626 * 120.14799 * 359.72114 * 14 12 11 16 16 C 1.37950 * 119.84626 * 179.72464 * 15 14 12 17 17 C 1.38369 * 120.15118 * 0.55861 * 16 15 14 18 18 C 1.38369 * 120.30119 * 359.71281 * 17 16 15 19 19 C 1.37948 * 120.15046 * 0.02562 * 18 17 16 20 20 C 1.50701 * 109.47219 * 264.87719 * 9 7 2 21 21 C 1.38234 * 120.00184 * 277.64355 * 20 9 7 22 22 C 1.38238 * 119.99620 * 179.80554 * 21 20 9 23 23 C 1.38236 * 120.00053 * 0.40669 * 22 21 20 24 24 C 1.38233 * 120.00142 * 359.84740 * 23 22 21 25 25 C 1.38232 * 119.99777 * 359.96232 * 24 23 22 26 26 H 0.96997 * 119.99586 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.07924 * 359.97438 * 15 14 12 28 28 H 1.08003 * 119.92650 * 180.29236 * 16 15 14 29 29 H 1.07990 * 119.84903 * 179.70092 * 17 16 15 30 30 H 1.07994 * 119.92566 * 179.97438 * 18 17 16 31 31 H 1.07998 * 120.07617 * 179.97438 * 19 18 17 32 32 H 1.07996 * 120.00126 * 0.02562 * 21 20 9 33 33 H 1.08003 * 119.99736 * 180.22938 * 22 21 20 34 34 H 1.08005 * 119.99645 * 179.83218 * 23 22 21 35 35 H 1.07999 * 119.99786 * 179.97438 * 24 23 22 36 36 H 1.08005 * 120.00047 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0813 -1.1961 0.0836 9 6 1.2556 -2.4965 -0.1184 10 1 0.3030 -2.3237 -0.6191 11 8 2.0441 -3.4401 -0.8906 12 6 1.8559 -3.4470 -2.2244 13 8 1.0546 -2.6859 -2.7286 14 6 2.6231 -4.3809 -3.0738 15 6 3.5483 -5.2538 -2.4980 16 6 4.2572 -6.1272 -3.2964 17 6 4.0614 -6.1316 -4.6662 18 6 3.1502 -5.2654 -5.2440 19 6 2.4307 -4.3904 -4.4567 20 6 1.0054 -3.0584 1.2574 21 6 1.9948 -3.7785 1.9003 22 6 1.7666 -4.2905 3.1639 23 6 0.5461 -4.0895 3.7811 24 6 -0.4451 -3.3738 3.1360 25 6 -0.2156 -2.8585 1.8740 26 1 -0.4849 0.8401 -0.0004 27 1 3.7057 -5.2480 -1.4295 28 1 4.9698 -6.8063 -2.8519 29 1 4.6225 -6.8141 -5.2871 30 1 3.0025 -5.2737 -6.3137 31 1 1.7201 -3.7145 -4.9090 32 1 2.9472 -3.9381 1.4169 33 1 2.5409 -4.8500 3.6678 34 1 0.3670 -4.4918 4.7673 35 1 -1.3988 -3.2172 3.6181 36 1 -0.9899 -2.2990 1.3701 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000204560782.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:15 Heat of formation + Delta-G solvation = -38.991990 kcal Electronic energy + Delta-G solvation = -21032.593619 eV Core-core repulsion = 17832.418664 eV Total energy + Delta-G solvation = -3200.174955 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.75044 -38.57743 -37.89856 -35.39933 -33.09717 -31.28749 -30.84345 -30.60136 -30.04627 -26.91169 -24.33724 -23.04074 -22.36206 -21.74314 -20.56459 -19.71774 -17.49699 -16.88154 -16.42530 -16.05148 -15.41333 -14.77924 -14.68200 -14.46873 -14.33529 -13.98658 -13.67561 -13.37688 -12.86161 -12.65990 -12.56092 -12.33330 -11.90168 -11.52694 -11.49685 -11.09577 -11.02000 -10.92442 -10.50728 -10.37873 -10.27360 -9.70732 -9.56983 -9.10499 -8.91124 -8.85475 -8.68521 -8.10179 -7.77097 -6.25511 -4.32914 1.00394 1.45428 2.21617 2.23675 3.20783 3.22965 3.29735 3.33955 3.65445 4.11040 4.29037 4.67780 4.93751 4.97219 5.09745 5.12717 5.41167 5.50815 5.59796 5.62965 5.71121 5.81654 5.94663 6.06592 6.27145 6.36136 6.42689 6.48178 6.49363 6.61701 6.81897 6.88959 6.95471 7.05425 7.25056 7.31832 7.53972 7.66909 7.81746 7.84675 7.95727 8.62366 8.90452 9.34547 10.81024 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.013042 B = 0.006153 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.432652 B = 4549.183202 C = 5991.760138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.076 3.924 3 Si 0.903 3.097 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.528 4.528 8 H 0.067 0.933 9 C 0.236 3.764 10 H 0.083 0.917 11 O -0.363 6.363 12 C 0.500 3.500 13 O -0.499 6.499 14 C -0.108 4.108 15 C -0.066 4.066 16 C -0.136 4.136 17 C -0.100 4.100 18 C -0.135 4.135 19 C -0.063 4.063 20 C -0.032 4.032 21 C -0.111 4.111 22 C -0.133 4.133 23 C -0.148 4.148 24 C -0.129 4.129 25 C -0.102 4.102 26 H 0.268 0.732 27 H 0.138 0.862 28 H 0.126 0.874 29 H 0.123 0.877 30 H 0.127 0.873 31 H 0.136 0.864 32 H 0.116 0.884 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.993 -11.139 -3.017 12.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.564 4.564 8 H 0.085 0.915 9 C 0.184 3.816 10 H 0.101 0.899 11 O -0.280 6.280 12 C 0.343 3.657 13 O -0.388 6.388 14 C -0.109 4.109 15 C -0.084 4.084 16 C -0.154 4.154 17 C -0.118 4.118 18 C -0.153 4.153 19 C -0.081 4.081 20 C -0.033 4.033 21 C -0.130 4.130 22 C -0.151 4.151 23 C -0.166 4.166 24 C -0.147 4.147 25 C -0.120 4.120 26 H 0.078 0.922 27 H 0.156 0.844 28 H 0.144 0.856 29 H 0.141 0.859 30 H 0.145 0.855 31 H 0.154 0.846 32 H 0.134 0.866 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.567 -10.760 -3.112 12.097 hybrid contribution 0.387 1.157 0.135 1.227 sum 4.954 -9.603 -2.978 11.209 Atomic orbital electron populations 1.69897 1.06110 1.27579 1.47018 1.24976 0.94984 0.99641 0.93354 0.86358 0.80225 0.82615 0.77832 1.19403 1.20505 1.20629 1.21191 0.93979 0.89088 1.52172 0.91507 1.19582 0.93657 0.84354 0.83995 0.89924 1.86378 1.63765 1.59928 1.17911 1.20789 0.80732 0.81466 0.82719 1.90805 1.34347 1.38918 1.74757 1.19534 0.99541 0.98500 0.93363 1.21561 0.93013 0.92792 1.01004 1.21140 1.00673 0.99821 0.93812 1.21333 0.97275 0.98036 0.95131 1.21073 0.97510 0.96817 0.99928 1.21334 0.97704 0.97066 0.92033 1.20201 0.92505 0.92977 0.97569 1.20933 0.99224 0.98290 0.94510 1.20967 0.96930 1.01479 0.95698 1.20867 0.94436 1.01809 0.99513 1.20982 0.98739 0.99420 0.95534 1.21031 0.97217 0.98667 0.95093 0.92229 0.84378 0.85570 0.85912 0.85521 0.84636 0.86558 0.87341 0.87489 0.87174 0.85521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.58 12.84 55.43 0.71 -23.87 16 2 C 0.08 2.11 5.45 -17.82 -0.10 2.01 16 3 Si 0.90 21.48 29.54 -169.99 -5.02 16.45 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.53 -14.63 8.65 -34.44 -0.30 -14.92 16 8 H 0.07 1.86 7.82 -52.49 -0.41 1.45 16 9 C 0.24 6.10 2.24 -29.03 -0.07 6.04 16 10 H 0.08 2.39 6.28 -51.93 -0.33 2.06 16 11 O -0.36 -8.48 8.36 -40.50 -0.34 -8.82 16 12 C 0.50 11.23 7.87 34.61 0.27 11.50 16 13 O -0.50 -12.84 15.61 -19.24 -0.30 -13.14 16 14 C -0.11 -1.90 5.87 -104.98 -0.62 -2.52 16 15 C -0.07 -0.97 9.62 -39.17 -0.38 -1.34 16 16 C -0.14 -1.59 10.03 -39.64 -0.40 -1.99 16 17 C -0.10 -1.07 10.04 -39.48 -0.40 -1.47 16 18 C -0.14 -1.60 10.03 -39.64 -0.40 -2.00 16 19 C -0.06 -0.96 9.60 -39.17 -0.38 -1.34 16 20 C -0.03 -0.74 4.97 -104.62 -0.52 -1.27 16 21 C -0.11 -2.30 9.36 -39.58 -0.37 -2.67 16 22 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 23 C -0.15 -2.56 10.05 -39.58 -0.40 -2.96 16 24 C -0.13 -2.41 10.05 -39.59 -0.40 -2.81 16 25 C -0.10 -2.26 9.67 -39.58 -0.38 -2.64 16 26 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.14 1.98 7.61 -52.49 -0.40 1.58 16 28 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 29 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 30 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.14 2.08 7.65 -52.49 -0.40 1.68 16 32 H 0.12 2.30 7.71 -52.49 -0.40 1.89 16 33 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 34 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 35 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.13 2.96 8.05 -52.48 -0.42 2.53 16 LS Contribution 322.98 15.07 4.87 4.87 Total: -1.00 -31.05 322.98 -9.33 -40.39 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -4.04 Total: 5.26 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -5.22 Total: -21.14 kcal Atomic # 7 Polarization: -24.58 SS G_CDS: 0.71 Total: -23.87 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.64 Total: -21.96 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.05 -9.33 -40.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000204560782.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.395 kcal (2) G-P(sol) polarization free energy of solvation -31.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds