Wall clock time and date at job start Tue Mar 31 2020 05:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00245 * 2 1 4 4 H 1.48495 * 109.46965 * 89.99990 * 3 2 1 5 5 H 1.48503 * 109.47221 * 210.00356 * 3 2 1 6 6 H 1.48498 * 109.47271 * 330.00093 * 3 2 1 7 7 C 1.37885 * 119.99624 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99662 * 183.30047 * 7 2 1 9 9 C 1.50696 * 120.00190 * 3.29371 * 7 2 1 10 10 H 1.09004 * 109.47089 * 332.16437 * 9 7 2 11 11 O 1.45204 * 109.47263 * 212.16227 * 9 7 2 12 12 C 1.34713 * 116.99674 * 90.00109 * 11 9 7 13 13 O 1.21466 * 120.00037 * 359.97438 * 12 11 9 14 14 C 1.47723 * 119.99529 * 180.02562 * 12 11 9 15 15 C 1.39626 * 120.15043 * 359.72478 * 14 12 11 16 16 C 1.37950 * 119.84582 * 179.72093 * 15 14 12 17 17 C 1.38367 * 120.15318 * 0.55325 * 16 15 14 18 18 C 1.38377 * 120.29826 * 359.72096 * 17 16 15 19 19 C 1.37946 * 120.14915 * 0.02562 * 18 17 16 20 20 C 1.50701 * 109.47100 * 92.16006 * 9 7 2 21 21 C 1.38235 * 119.99547 * 82.48763 * 20 9 7 22 22 C 1.38238 * 120.00128 * 179.78723 * 21 20 9 23 23 C 1.38240 * 119.99472 * 0.44301 * 22 21 20 24 24 C 1.38232 * 120.00109 * 359.81542 * 23 22 21 25 25 C 1.38230 * 120.00583 * 262.76254 * 20 9 7 26 26 H 0.97000 * 120.00068 * 174.80121 * 1 2 3 27 27 H 1.08004 * 120.08109 * 0.02562 * 15 14 12 28 28 H 1.08004 * 119.92251 * 180.30161 * 16 15 14 29 29 H 1.07993 * 119.85267 * 179.69781 * 17 16 15 30 30 H 1.07996 * 119.91930 * 179.97438 * 18 17 16 31 31 H 1.07995 * 120.07408 * 179.97438 * 19 18 17 32 32 H 1.08001 * 120.00184 * 0.02562 * 21 20 9 33 33 H 1.07994 * 120.00545 * 180.27527 * 22 21 20 34 34 H 1.08002 * 120.00077 * 179.82961 * 23 22 21 35 35 H 1.08003 * 120.00275 * 179.97438 * 24 23 22 36 36 H 1.08001 * 119.99421 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 1.4000 5 1 3.5467 1.4401 -0.7001 6 1 1.4467 2.6527 -0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0832 -1.1950 0.0533 9 6 1.2528 -2.4981 -0.0761 10 1 0.2613 -2.3717 0.3589 11 8 1.9779 -3.5182 0.6602 12 6 1.6798 -3.6576 1.9665 13 8 0.8376 -2.9463 2.4766 14 6 2.3780 -4.6749 2.7788 15 6 3.3433 -5.4974 2.1945 16 6 3.9956 -6.4414 2.9603 17 6 3.6871 -6.5820 4.3017 18 6 2.7274 -5.7741 4.8858 19 6 2.0712 -4.8226 4.1329 20 6 1.1193 -2.9181 -1.5172 21 6 2.1600 -3.5774 -2.1442 22 6 2.0359 -3.9667 -3.4648 23 6 0.8745 -3.6885 -4.1611 24 6 -0.1641 -3.0245 -3.5357 25 6 -0.0416 -2.6392 -2.2138 26 1 -0.4850 -0.8366 -0.0761 27 1 3.5823 -5.3914 1.1466 28 1 4.7460 -7.0749 2.5107 29 1 4.1973 -7.3259 4.8955 30 1 2.4912 -5.8894 5.9333 31 1 1.3222 -4.1930 4.5899 32 1 3.0686 -3.7918 -1.6012 33 1 2.8472 -4.4857 -3.9534 34 1 0.7786 -3.9901 -5.1937 35 1 -1.0713 -2.8067 -4.0798 36 1 -0.8532 -2.1205 -1.7251 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000204560791.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:17 Heat of formation + Delta-G solvation = -40.208848 kcal Electronic energy + Delta-G solvation = -21085.851369 eV Core-core repulsion = 17885.623646 eV Total energy + Delta-G solvation = -3200.227722 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.86931 -38.72534 -38.01938 -35.55901 -33.41816 -31.30061 -30.90042 -30.60247 -30.19614 -26.62282 -24.25125 -23.13849 -22.43530 -21.89266 -20.72467 -19.98761 -17.63242 -17.28100 -16.52830 -16.14313 -15.48815 -14.98064 -14.63842 -14.54500 -14.13454 -13.87297 -13.78127 -13.43249 -13.15082 -12.79790 -12.70153 -12.43532 -12.17440 -11.81639 -11.52588 -11.07070 -10.90034 -10.84344 -10.48775 -10.31968 -10.20935 -9.95079 -9.71344 -8.96487 -8.96219 -8.89377 -8.55195 -8.24918 -7.83845 -6.58347 -4.33820 0.93805 1.40094 2.06797 2.08809 3.13146 3.36867 3.38759 3.52891 3.56716 4.03488 4.37456 4.54201 4.88358 4.92205 5.04636 5.17332 5.31904 5.44840 5.50132 5.53132 5.57070 5.70412 5.86853 6.00163 6.07254 6.21507 6.28836 6.40149 6.42900 6.51910 6.56990 6.70727 6.77723 6.90236 7.11370 7.14256 7.35814 7.58853 7.66561 7.75470 8.20647 8.58149 8.67611 9.38292 10.77872 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.013428 B = 0.006056 C = 0.004679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.642593 B = 4622.337073 C = 5983.231966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.034 3.966 3 Si 1.075 2.925 4 H -0.284 1.284 5 H -0.285 1.285 6 H -0.280 1.280 7 C -0.602 4.602 8 H 0.062 0.938 9 C 0.230 3.770 10 H 0.062 0.938 11 O -0.357 6.357 12 C 0.500 3.500 13 O -0.501 6.501 14 C -0.109 4.109 15 C -0.065 4.065 16 C -0.136 4.136 17 C -0.098 4.098 18 C -0.135 4.135 19 C -0.062 4.062 20 C -0.039 4.039 21 C -0.106 4.106 22 C -0.128 4.128 23 C -0.146 4.146 24 C -0.122 4.122 25 C -0.116 4.116 26 H 0.272 0.728 27 H 0.138 0.862 28 H 0.127 0.873 29 H 0.124 0.876 30 H 0.128 0.872 31 H 0.136 0.864 32 H 0.118 0.882 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.473 -12.020 1.831 13.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.174 4.174 3 Si 0.901 3.099 4 H -0.210 1.210 5 H -0.211 1.211 6 H -0.206 1.206 7 C -0.639 4.639 8 H 0.081 0.919 9 C 0.177 3.823 10 H 0.080 0.920 11 O -0.274 6.274 12 C 0.344 3.656 13 O -0.390 6.390 14 C -0.110 4.110 15 C -0.084 4.084 16 C -0.154 4.154 17 C -0.116 4.116 18 C -0.153 4.153 19 C -0.080 4.080 20 C -0.039 4.039 21 C -0.125 4.125 22 C -0.146 4.146 23 C -0.164 4.164 24 C -0.140 4.140 25 C -0.134 4.134 26 H 0.084 0.916 27 H 0.156 0.844 28 H 0.145 0.855 29 H 0.142 0.858 30 H 0.146 0.854 31 H 0.154 0.846 32 H 0.136 0.864 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.994 -10.136 1.999 11.475 hybrid contribution 0.179 -1.451 -0.138 1.469 sum 5.173 -11.587 1.861 12.825 Atomic orbital electron populations 1.70779 1.06843 1.31165 1.43286 1.25958 0.96348 1.02799 0.92264 0.83469 0.74782 0.74474 0.77129 1.21039 1.21060 1.20590 1.22036 0.95176 0.90164 1.56543 0.91929 1.19570 0.94488 0.84407 0.83812 0.92012 1.86387 1.63051 1.56835 1.21109 1.20845 0.80653 0.81862 0.82276 1.90801 1.31992 1.43730 1.72498 1.19482 0.99705 0.97871 0.93960 1.21551 0.93176 0.92900 1.00725 1.21143 1.00744 0.99255 0.94251 1.21350 0.96762 0.98381 0.95138 1.21084 0.97526 0.96565 1.00082 1.21332 0.97992 0.96525 0.92198 1.20259 0.92781 0.93649 0.97249 1.20893 0.98726 0.98635 0.94212 1.21011 0.97529 1.01285 0.94808 1.20896 0.94530 1.01799 0.99215 1.20956 0.98644 0.99553 0.94844 1.20935 0.97618 1.00163 0.94686 0.91587 0.84440 0.85497 0.85809 0.85421 0.84619 0.86401 0.87060 0.87180 0.86893 0.86360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.21 13.62 55.43 0.75 -25.45 16 2 C 0.03 0.96 5.46 -17.82 -0.10 0.86 16 3 Si 1.07 25.24 29.90 -169.99 -5.08 20.16 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.60 -16.94 8.65 -34.44 -0.30 -17.23 16 8 H 0.06 1.77 7.82 -52.48 -0.41 1.36 16 9 C 0.23 5.94 2.06 -29.04 -0.06 5.88 16 10 H 0.06 1.76 5.27 -51.93 -0.27 1.48 16 11 O -0.36 -8.40 8.36 -40.53 -0.34 -8.74 16 12 C 0.50 11.31 7.87 34.61 0.27 11.58 16 13 O -0.50 -12.97 15.61 -19.24 -0.30 -13.27 16 14 C -0.11 -1.92 5.87 -104.99 -0.62 -2.54 16 15 C -0.07 -0.96 9.62 -39.17 -0.38 -1.34 16 16 C -0.14 -1.58 10.03 -39.64 -0.40 -1.97 16 17 C -0.10 -1.04 10.04 -39.48 -0.40 -1.44 16 18 C -0.13 -1.58 10.03 -39.64 -0.40 -1.98 16 19 C -0.06 -0.95 9.60 -39.17 -0.38 -1.33 16 20 C -0.04 -0.90 4.97 -104.63 -0.52 -1.42 16 21 C -0.11 -2.18 9.36 -39.58 -0.37 -2.55 16 22 C -0.13 -2.25 10.05 -39.58 -0.40 -2.64 16 23 C -0.15 -2.47 10.05 -39.58 -0.40 -2.87 16 24 C -0.12 -2.24 10.05 -39.59 -0.40 -2.64 16 25 C -0.12 -2.52 9.60 -39.59 -0.38 -2.90 16 26 H 0.27 7.98 5.43 -40.82 -0.22 7.76 16 27 H 0.14 1.98 7.61 -52.48 -0.40 1.58 16 28 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 29 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 30 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.14 2.09 7.65 -52.49 -0.40 1.69 16 32 H 0.12 2.33 7.70 -52.49 -0.40 1.93 16 33 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 36 H 0.12 2.66 7.03 -52.49 -0.37 2.29 16 LS Contribution 318.94 15.07 4.81 4.81 Total: -1.00 -32.39 318.94 -9.18 -41.57 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -3.81 Total: 5.46 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -5.21 Total: -24.54 kcal Atomic # 7 Polarization: -26.21 SS G_CDS: 0.75 Total: -25.45 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.64 Total: -22.00 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -5.08 Total: 20.16 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.39 -9.18 -41.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000204560791.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.362 kcal (2) G-P(sol) polarization free energy of solvation -32.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds