Wall clock time and date at job start Tue Mar 31 2020 05:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50702 * 120.00170 * 2 1 4 4 N 1.46503 * 109.47331 * 122.98300 * 3 2 1 5 5 C 1.46498 * 119.99936 * 85.68910 * 4 3 2 6 6 C 1.50704 * 109.46984 * 80.20501 * 5 4 3 7 7 H 1.07994 * 119.99629 * 359.97438 * 6 5 4 8 8 C 1.37870 * 119.99616 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00468 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99588 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47131 * 60.00772 * 10 8 6 12 12 H 1.48501 * 109.47082 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47382 * 300.00095 * 10 8 6 14 14 C 1.34777 * 119.99751 * 265.69352 * 4 3 2 15 15 O 1.21528 * 120.00133 * 353.16132 * 14 4 3 16 16 C 1.48003 * 119.99931 * 173.16744 * 14 4 3 17 17 C 1.39988 * 120.92679 * 30.85110 * 16 14 4 18 18 C 1.37927 * 119.09275 * 179.75349 * 17 16 14 19 19 N 1.31939 * 121.01762 * 0.53702 * 18 17 16 20 20 C 1.31860 * 122.05452 * 359.71750 * 19 18 17 21 21 F 1.35106 * 119.60810 * 179.97438 * 20 19 18 22 22 C 1.38886 * 120.78821 * 0.02562 * 20 19 18 23 23 F 1.35099 * 120.55007 * 179.97438 * 22 20 19 24 24 H 1.08001 * 119.99758 * 5.07052 * 1 2 3 25 25 H 1.07993 * 119.99986 * 185.05908 * 1 2 3 26 26 H 1.08004 * 120.00350 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.46908 * 2.98024 * 3 2 1 28 28 H 1.08997 * 109.47041 * 242.98481 * 3 2 1 29 29 H 1.09005 * 109.46959 * 200.20167 * 5 4 3 30 30 H 1.08994 * 109.47278 * 320.20225 * 5 4 3 31 31 H 0.97000 * 120.00143 * 179.97438 * 9 8 6 32 32 H 1.07998 * 120.45165 * 0.02562 * 17 16 14 33 33 H 1.08002 * 119.49616 * 180.27961 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9589 1.3521 1.1586 5 6 4.2956 0.7584 1.0758 6 6 5.2259 1.7118 0.3711 7 1 4.8581 2.6644 0.0197 8 6 6.5466 1.3678 0.1751 9 7 6.9944 0.2075 0.6026 10 14 7.6996 2.5494 -0.6991 11 1 7.7698 3.8244 0.0590 12 1 9.0546 1.9477 -0.7829 13 1 7.1909 2.8151 -2.0688 14 6 2.5527 1.9414 2.3006 15 8 1.4965 2.5416 2.3324 16 6 3.3932 1.8577 3.5160 17 6 4.7878 1.7809 3.4225 18 6 5.5346 1.7094 4.5799 19 7 4.9538 1.7020 5.7645 20 6 3.6440 1.7673 5.9021 21 9 3.1014 1.7556 7.1393 22 6 2.8155 1.8470 4.7903 23 9 1.4741 1.9132 4.9368 24 1 -0.5400 0.9317 -0.0827 25 1 -0.5400 -0.9316 0.0825 26 1 1.8500 -0.9353 0.0004 27 1 1.3564 2.1329 0.0534 28 1 2.6494 1.3863 -0.9155 29 1 4.6691 0.5626 2.0810 30 1 4.2439 -0.1771 0.5189 31 1 7.9234 -0.0346 0.4643 32 1 5.2725 1.7821 2.4574 33 1 6.6113 1.6546 4.5154 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293751645.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:01 Heat of formation + Delta-G solvation = -36.964432 kcal Electronic energy + Delta-G solvation = -22199.597995 eV Core-core repulsion = 18477.574183 eV Total energy + Delta-G solvation = -3722.023812 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.092 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.31028 -48.40567 -40.36057 -38.74029 -35.79936 -34.09301 -32.66156 -31.96221 -30.44534 -27.81498 -26.50035 -24.25333 -23.41543 -23.00051 -20.24351 -19.23651 -17.98677 -17.68393 -17.17302 -16.81279 -16.48239 -16.01811 -15.67760 -14.91248 -14.81065 -14.61069 -14.59097 -14.26954 -14.04454 -13.29749 -13.08057 -12.92610 -12.71636 -12.60070 -12.34428 -11.53927 -11.33301 -11.18669 -10.94465 -10.74718 -10.45873 -10.07916 -9.99397 -9.66849 -9.31201 -9.08158 -8.88805 -8.55709 -8.02852 -6.47817 -4.59536 0.72051 0.92655 2.41434 3.06382 3.09186 3.15977 3.18747 3.29918 3.68839 3.76191 4.10254 4.17354 4.60246 4.80825 4.83007 4.92240 5.23909 5.43209 5.57670 5.63791 5.86803 5.97434 6.08412 6.22018 6.32842 6.40271 6.71886 6.83628 6.87913 7.00443 7.19537 7.46850 7.62101 7.68708 7.98881 8.45711 8.63311 9.10159 10.56428 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.012761 B = 0.007787 C = 0.005253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.604108 B = 3594.726374 C = 5329.192005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.163 4.163 3 C 0.143 3.857 4 N -0.577 5.577 5 C 0.205 3.795 6 C -0.552 4.552 7 H 0.068 0.932 8 C 0.071 3.929 9 N -0.879 5.879 10 Si 0.899 3.101 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.273 1.273 14 C 0.558 3.442 15 O -0.545 6.545 16 C -0.098 4.098 17 C -0.121 4.121 18 C 0.111 3.889 19 N -0.477 5.477 20 C 0.256 3.744 21 F -0.107 7.107 22 C 0.076 3.924 23 F -0.107 7.107 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.109 0.891 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.063 0.937 30 H 0.040 0.960 31 H 0.272 0.728 32 H 0.222 0.778 33 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.540 -0.030 2.476 4.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.182 4.182 3 C 0.021 3.979 4 N -0.306 5.306 5 C 0.086 3.914 6 C -0.590 4.590 7 H 0.086 0.914 8 C -0.135 4.135 9 N -0.515 5.515 10 Si 0.726 3.274 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.199 1.199 14 C 0.345 3.655 15 O -0.425 6.425 16 C -0.110 4.110 17 C -0.139 4.139 18 C -0.045 4.045 19 N -0.191 5.191 20 C 0.101 3.899 21 F -0.087 7.087 22 C 0.051 3.949 23 F -0.085 7.085 24 H 0.114 0.886 25 H 0.112 0.888 26 H 0.127 0.873 27 H 0.101 0.899 28 H 0.110 0.890 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.238 0.762 33 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -3.484 0.096 3.263 4.774 hybrid contribution -0.035 0.400 -0.889 0.975 sum -3.519 0.496 2.374 4.274 Atomic orbital electron populations 1.23791 0.95856 1.01620 1.01032 1.23375 0.96131 0.99364 0.99355 1.20447 0.93016 0.95161 0.89302 1.47995 1.17206 1.54960 1.10434 1.20363 0.76669 0.94671 0.99713 1.21429 0.94294 1.03981 1.39320 0.91354 1.25003 0.98122 0.95428 0.94950 1.69910 1.16861 1.20333 1.44400 0.86512 0.79529 0.80915 0.80478 1.19669 1.20853 1.19869 1.17761 0.84806 0.79970 0.82952 1.90744 1.23946 1.43054 1.84728 1.20514 0.95427 1.02607 0.92439 1.24327 0.92223 0.92040 1.05357 1.22697 1.01204 0.95705 0.84872 1.66913 1.08801 1.12949 1.30418 1.17888 0.88158 1.04369 0.79514 1.91629 1.84296 1.93789 1.38937 1.18395 0.78627 1.05007 0.92826 1.91580 1.27739 1.93106 1.96118 0.88557 0.88773 0.87284 0.89869 0.88990 0.91960 0.94205 0.91804 0.76225 0.80231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.59 14.31 29.02 0.42 -2.17 16 2 C -0.16 -2.55 9.85 -36.02 -0.35 -2.91 16 3 C 0.14 2.50 5.93 -5.19 -0.03 2.47 16 4 N -0.58 -11.40 2.45 -177.49 -0.44 -11.83 16 5 C 0.20 4.29 4.68 -5.19 -0.02 4.26 16 6 C -0.55 -12.40 7.59 -34.44 -0.26 -12.66 16 7 H 0.07 1.57 7.81 -52.49 -0.41 1.16 16 8 C 0.07 1.61 5.36 -17.82 -0.10 1.52 16 9 N -0.88 -20.82 13.29 55.43 0.74 -20.08 16 10 Si 0.90 18.14 29.54 -169.99 -5.02 13.12 16 11 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 12 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 13 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 14 C 0.56 11.58 7.41 -12.26 -0.09 11.49 16 15 O -0.55 -12.34 15.55 5.34 0.08 -12.26 16 16 C -0.10 -1.88 5.59 -104.61 -0.59 -2.47 16 17 C -0.12 -2.15 7.58 -39.04 -0.30 -2.45 16 18 C 0.11 1.77 11.16 -17.62 -0.20 1.57 16 19 N -0.48 -8.07 10.34 -13.59 -0.14 -8.21 16 20 C 0.26 4.48 8.42 -17.30 -0.15 4.33 16 21 F -0.11 -1.80 17.21 2.25 0.04 -1.77 16 22 C 0.08 1.40 7.30 -38.72 -0.28 1.12 16 23 F -0.11 -2.07 16.08 2.25 0.04 -2.04 16 24 H 0.10 1.31 7.85 -52.49 -0.41 0.90 16 25 H 0.09 1.14 8.06 -52.49 -0.42 0.72 16 26 H 0.11 1.68 8.06 -52.48 -0.42 1.25 16 27 H 0.08 1.46 6.88 -51.93 -0.36 1.10 16 28 H 0.09 1.56 8.10 -51.93 -0.42 1.14 16 29 H 0.06 1.31 3.94 -51.95 -0.20 1.11 16 30 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.27 6.20 8.31 -40.82 -0.34 5.86 16 32 H 0.22 4.32 3.42 -52.49 -0.18 4.14 16 33 H 0.18 2.33 8.06 -52.49 -0.42 1.91 16 LS Contribution 299.58 15.07 4.51 4.51 Total: -1.00 -25.32 299.58 -4.95 -30.27 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -2.81 Total: 4.18 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -1.95 Total: 4.11 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.16 Total: -40.13 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.08 Total: -12.26 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.07 Total: -3.80 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.02 Total: 13.12 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -25.32 -4.95 -30.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293751645.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.694 kcal (2) G-P(sol) polarization free energy of solvation -25.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds