Wall clock time and date at job start Tue Mar 31 2020 05:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86795 * 120.00203 * 2 1 4 4 H 1.48498 * 109.47159 * 270.00460 * 3 2 1 5 5 H 1.48502 * 109.47213 * 30.00257 * 3 2 1 6 6 H 1.48500 * 109.47576 * 150.00154 * 3 2 1 7 7 C 1.40034 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99784 * 170.17449 * 7 2 1 9 9 C 1.41538 * 120.00346 * 350.17149 * 7 2 1 10 10 C 1.41173 * 120.99956 * 151.67409 * 9 7 2 11 11 C 1.37595 * 119.01743 * 180.02562 * 10 9 7 12 12 N 1.32086 * 121.10414 * 359.74695 * 11 10 9 13 13 C 1.32471 * 122.23296 * 0.52949 * 12 11 10 14 14 N 1.39476 * 119.57631 * 179.74866 * 13 12 11 15 15 C 1.34769 * 120.00075 * 5.09179 * 14 13 12 16 16 O 1.21281 * 120.00480 * 354.97951 * 15 14 13 17 17 C 1.50705 * 120.00085 * 174.97688 * 15 14 13 18 18 C 1.53780 * 113.61192 * 80.86442 * 17 15 14 19 19 C 1.54043 * 86.98407 * 140.02169 * 18 17 15 20 20 F 1.39905 * 113.62099 * 220.01701 * 19 18 17 21 21 F 1.39899 * 113.69070 * 89.12654 * 19 18 17 22 22 C 1.53778 * 87.08078 * 334.56785 * 19 18 17 23 23 C 1.38596 * 120.84106 * 359.47099 * 13 12 11 24 24 H 0.96997 * 119.99739 * 359.97438 * 1 2 3 25 25 H 1.07995 * 120.49203 * 0.02562 * 10 9 7 26 26 H 1.07994 * 119.44977 * 179.97438 * 11 10 9 27 27 H 0.96999 * 119.99226 * 185.09335 * 14 13 12 28 28 H 1.09000 * 112.84543 * 309.66935 * 17 15 14 29 29 H 1.09001 * 113.61503 * 254.61807 * 18 17 15 30 30 H 1.08998 * 113.61713 * 25.51626 * 18 17 15 31 31 H 1.09001 * 113.61763 * 270.88463 * 22 19 18 32 32 H 1.08999 * 113.69042 * 139.98553 * 22 19 18 33 33 H 1.08002 * 120.60204 * 180.28127 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4390 2.6526 0.7001 6 1 3.5391 1.4402 0.7000 7 6 2.0076 -1.2127 -0.0005 8 1 3.0758 -1.2195 -0.1602 9 6 1.3155 -2.4296 0.2081 10 6 1.7908 -3.6399 -0.3416 11 6 1.0855 -4.7991 -0.1134 12 7 -0.0187 -4.7945 0.6114 13 6 -0.5092 -3.6855 1.1447 14 7 -1.6825 -3.7437 1.8965 15 6 -2.2537 -4.9349 2.1631 16 8 -1.8002 -5.9479 1.6742 17 6 -3.4561 -5.0082 3.0687 18 6 -4.7788 -4.6605 2.3656 19 6 -5.4149 -5.8089 3.1716 20 9 -6.3296 -6.5703 2.4361 21 9 -5.9151 -5.4123 4.4164 22 6 -4.0107 -6.4320 3.2421 23 6 0.1318 -2.4692 0.9698 24 1 -0.4849 0.8400 0.0004 25 1 2.6947 -3.6558 -0.9324 26 1 1.4426 -5.7288 -0.5310 27 1 -2.0873 -2.9267 2.2275 28 1 -3.3097 -4.4789 4.0102 29 1 -5.1661 -3.6755 2.6263 30 1 -4.7619 -4.8387 1.2905 31 1 -3.7841 -7.0937 2.4061 32 1 -3.7771 -6.8767 4.2094 33 1 -0.2691 -1.5681 1.4101 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336077968.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:06 Heat of formation + Delta-G solvation = -78.296237 kcal Electronic energy + Delta-G solvation = -21278.408400 eV Core-core repulsion = 17554.592306 eV Total energy + Delta-G solvation = -3723.816094 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.95516 -47.28366 -40.06512 -38.34055 -36.61354 -34.38559 -33.78972 -30.60433 -28.96625 -26.42231 -26.15568 -25.93316 -22.19038 -21.91194 -20.54093 -19.54696 -18.10388 -17.73855 -16.92404 -16.40928 -16.30590 -15.85613 -15.26702 -14.96357 -14.26744 -14.16258 -14.14657 -13.94737 -13.76789 -13.55686 -12.96406 -12.79840 -12.64936 -12.41368 -11.97206 -11.63083 -11.56676 -11.42787 -11.23106 -10.96144 -10.62323 -10.35036 -10.21559 -9.82046 -9.49043 -9.44156 -8.02433 -7.81829 -7.12103 -6.81977 -4.68139 2.41648 2.74449 2.98579 3.02787 3.08755 3.23128 3.29679 3.46017 3.64619 3.82067 4.07783 4.22187 4.34157 4.63825 5.06548 5.11341 5.25611 5.30360 5.40637 5.56417 5.60328 5.91597 5.97049 6.50562 6.56397 6.73285 6.88810 7.05772 7.30330 7.38403 7.69285 7.86770 8.13417 8.35048 8.62630 8.69590 8.76800 9.59435 10.05507 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.026611 B = 0.003841 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.934134 B = 7287.762754 C = 8083.345113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.076 3.924 3 Si 0.914 3.086 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.457 4.457 8 H 0.082 0.918 9 C 0.144 3.856 10 C -0.280 4.280 11 C 0.117 3.883 12 N -0.553 5.553 13 C 0.332 3.668 14 N -0.654 5.654 15 C 0.512 3.488 16 O -0.476 6.476 17 C -0.134 4.134 18 C -0.149 4.149 19 C 0.254 3.746 20 F -0.189 7.189 21 F -0.180 7.180 22 C -0.139 4.139 23 C -0.235 4.235 24 H 0.281 0.719 25 H 0.103 0.897 26 H 0.125 0.875 27 H 0.409 0.591 28 H 0.125 0.875 29 H 0.102 0.898 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.098 0.902 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.304 -3.006 6.241 10.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.142 4.142 3 Si 0.738 3.262 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.488 4.488 8 H 0.100 0.900 9 C 0.135 3.865 10 C -0.303 4.303 11 C -0.037 4.037 12 N -0.272 5.272 13 C 0.108 3.892 14 N -0.299 5.299 15 C 0.295 3.705 16 O -0.346 6.346 17 C -0.155 4.155 18 C -0.188 4.188 19 C 0.217 3.783 20 F -0.170 7.170 21 F -0.161 7.161 22 C -0.178 4.178 23 C -0.261 4.261 24 H 0.092 0.908 25 H 0.121 0.879 26 H 0.142 0.858 27 H 0.244 0.756 28 H 0.143 0.857 29 H 0.121 0.879 30 H 0.136 0.864 31 H 0.145 0.855 32 H 0.116 0.884 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.708 -4.438 6.080 11.510 hybrid contribution 0.360 2.124 0.064 2.155 sum -8.348 -2.314 6.144 10.620 Atomic orbital electron populations 1.69737 1.07578 1.29286 1.35685 1.25933 0.94873 1.01417 0.91942 0.86212 0.80454 0.80158 0.79343 1.19372 1.20048 1.18417 1.19573 0.95872 0.89995 1.43392 0.90016 1.17586 0.90198 0.92283 0.86420 1.21962 1.04498 0.94605 1.09265 1.21776 0.90745 0.96561 0.94650 1.67204 1.15601 1.28136 1.16227 1.18207 0.86818 0.91004 0.93210 1.43403 1.24840 1.09038 1.52659 1.20037 0.84207 0.84132 0.82086 1.90794 1.61317 1.33849 1.48614 1.22609 0.93506 0.98895 1.00527 1.24080 0.93356 0.99228 1.02089 1.22108 0.85304 0.92783 0.78089 1.93016 1.70486 1.77125 1.76374 1.93014 1.89313 1.91139 1.42624 1.23967 0.89691 0.97390 1.06727 1.21608 1.01403 0.95426 1.07619 0.90772 0.87871 0.85793 0.75575 0.85745 0.87946 0.86391 0.85545 0.88384 0.85246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.16 10.83 55.55 0.60 -18.56 16 2 C 0.08 1.80 5.30 -17.34 -0.09 1.71 16 3 Si 0.91 17.58 29.57 -169.99 -5.03 12.55 16 4 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.28 -5.16 7.11 56.52 0.40 -4.76 16 6 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 7 C -0.46 -11.49 9.13 -37.65 -0.34 -11.83 16 8 H 0.08 1.97 7.87 -52.48 -0.41 1.55 16 9 C 0.14 3.68 5.58 -106.55 -0.59 3.08 16 10 C -0.28 -6.70 9.90 -38.70 -0.38 -7.08 16 11 C 0.12 2.74 11.15 -17.68 -0.20 2.54 16 12 N -0.55 -13.65 7.85 -12.52 -0.10 -13.75 16 13 C 0.33 7.74 7.42 -154.70 -1.15 6.59 16 14 N -0.65 -11.94 5.39 -11.49 -0.06 -12.00 16 15 C 0.51 8.77 7.31 -10.99 -0.08 8.69 16 16 O -0.48 -10.16 14.17 5.56 0.08 -10.08 16 17 C -0.13 -1.56 4.12 -90.96 -0.37 -1.94 16 18 C -0.15 -1.54 7.44 -25.78 -0.19 -1.73 16 19 C 0.25 2.81 3.28 -25.78 -0.08 2.73 16 20 F -0.19 -2.38 17.41 2.25 0.04 -2.34 16 21 F -0.18 -2.07 17.39 2.25 0.04 -2.03 16 22 C -0.14 -1.57 7.18 -25.92 -0.19 -1.75 16 23 C -0.24 -5.77 8.59 -38.48 -0.33 -6.10 16 24 H 0.28 6.13 8.29 -40.82 -0.34 5.79 16 25 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 26 H 0.12 2.53 8.06 -52.49 -0.42 2.10 16 27 H 0.41 6.04 8.70 -40.82 -0.36 5.69 16 28 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.12 1.29 8.09 -51.93 -0.42 0.87 16 31 H 0.13 1.58 7.45 -51.93 -0.39 1.19 16 32 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.13 3.14 6.27 -52.49 -0.33 2.82 16 LS Contribution 297.54 15.07 4.48 4.48 Total: -1.00 -30.23 297.54 -7.10 -37.33 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -3.15 Total: 9.48 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -4.01 Total: -5.08 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: 0.44 Total: -44.31 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.08 Total: -10.08 kcal Atomic # 9 Polarization: -4.45 SS G_CDS: 0.08 Total: -4.37 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.03 Total: 12.55 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.23 -7.10 -37.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336077968.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.966 kcal (2) G-P(sol) polarization free energy of solvation -30.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds