Wall clock time and date at job start Tue Mar 31 2020 05:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86795 * 120.00203 * 2 1 4 4 H 1.48498 * 109.47159 * 270.00460 * 3 2 1 5 5 H 1.48502 * 109.47213 * 30.00257 * 3 2 1 6 6 H 1.48500 * 109.47576 * 150.00154 * 3 2 1 7 7 C 1.40034 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99784 * 170.17449 * 7 2 1 9 9 C 1.41538 * 120.00346 * 350.17149 * 7 2 1 10 10 C 1.41173 * 120.99956 * 151.67409 * 9 7 2 11 11 C 1.37595 * 119.01743 * 180.02562 * 10 9 7 12 12 N 1.32086 * 121.10414 * 359.74695 * 11 10 9 13 13 C 1.32471 * 122.23296 * 0.52949 * 12 11 10 14 14 N 1.39476 * 119.57631 * 179.74866 * 13 12 11 15 15 C 1.34769 * 120.00075 * 5.09179 * 14 13 12 16 16 O 1.21281 * 120.00480 * 354.97951 * 15 14 13 17 17 C 1.50705 * 120.00085 * 174.97688 * 15 14 13 18 18 C 1.53780 * 113.61192 * 80.86442 * 17 15 14 19 19 C 1.54043 * 86.98407 * 140.02169 * 18 17 15 20 20 F 1.39905 * 113.62099 * 220.01701 * 19 18 17 21 21 F 1.39899 * 113.69070 * 89.12654 * 19 18 17 22 22 C 1.53778 * 87.08078 * 334.56785 * 19 18 17 23 23 C 1.38596 * 120.84106 * 359.47099 * 13 12 11 24 24 H 0.96997 * 119.99739 * 359.97438 * 1 2 3 25 25 H 1.07995 * 120.49203 * 0.02562 * 10 9 7 26 26 H 1.07994 * 119.44977 * 179.97438 * 11 10 9 27 27 H 0.96999 * 119.99226 * 185.09335 * 14 13 12 28 28 H 1.09000 * 112.84543 * 309.66935 * 17 15 14 29 29 H 1.09001 * 113.61503 * 254.61807 * 18 17 15 30 30 H 1.08998 * 113.61713 * 25.51626 * 18 17 15 31 31 H 1.09001 * 113.61763 * 270.88463 * 22 19 18 32 32 H 1.08999 * 113.69042 * 139.98553 * 22 19 18 33 33 H 1.08002 * 120.60204 * 180.28127 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4390 2.6526 0.7001 6 1 3.5391 1.4402 0.7000 7 6 2.0076 -1.2127 -0.0005 8 1 3.0758 -1.2195 -0.1602 9 6 1.3155 -2.4296 0.2081 10 6 1.7908 -3.6399 -0.3416 11 6 1.0855 -4.7991 -0.1134 12 7 -0.0187 -4.7945 0.6114 13 6 -0.5092 -3.6855 1.1447 14 7 -1.6825 -3.7437 1.8965 15 6 -2.2537 -4.9349 2.1631 16 8 -1.8002 -5.9479 1.6742 17 6 -3.4561 -5.0082 3.0687 18 6 -4.7788 -4.6605 2.3656 19 6 -5.4149 -5.8089 3.1716 20 9 -6.3296 -6.5703 2.4361 21 9 -5.9151 -5.4123 4.4164 22 6 -4.0107 -6.4320 3.2421 23 6 0.1318 -2.4692 0.9698 24 1 -0.4849 0.8400 0.0004 25 1 2.6947 -3.6558 -0.9324 26 1 1.4426 -5.7288 -0.5310 27 1 -2.0873 -2.9267 2.2275 28 1 -3.3097 -4.4789 4.0102 29 1 -5.1661 -3.6755 2.6263 30 1 -4.7619 -4.8387 1.2905 31 1 -3.7841 -7.0937 2.4061 32 1 -3.7771 -6.8767 4.2094 33 1 -0.2691 -1.5681 1.4101 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336077968.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:06 Heat of formation + Delta-G solvation = -95.616445 kcal Electronic energy + Delta-G solvation = -21279.159461 eV Core-core repulsion = 17554.592306 eV Total energy + Delta-G solvation = -3724.567154 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.86499 -48.20348 -41.48449 -39.93704 -37.83312 -36.09724 -35.48085 -32.45546 -30.66447 -27.92307 -27.28171 -27.20873 -23.87636 -23.47986 -21.91495 -20.78183 -19.46879 -19.26418 -17.94104 -17.61331 -17.45158 -17.19867 -16.90797 -16.26852 -16.05564 -15.71295 -15.32455 -15.16451 -15.06097 -14.60085 -14.48794 -14.33293 -14.13973 -13.65668 -13.20306 -13.04756 -12.86201 -12.68940 -12.57338 -12.45053 -12.08987 -11.90235 -11.49596 -11.47052 -11.17539 -10.99873 -9.90694 -9.62439 -8.88379 -8.59573 -6.57599 0.71162 0.99843 1.42601 1.51857 1.56375 1.78388 2.04468 2.21552 2.41465 2.71878 2.82954 3.16024 3.25671 3.36251 3.72179 3.84926 4.24085 4.26702 4.38281 4.45664 4.61891 4.71655 4.74971 4.84746 4.91712 5.06086 5.10785 5.23863 5.47008 5.63247 5.92213 6.14051 6.47176 6.59046 6.78869 6.84476 7.26395 7.81213 8.30280 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.026611 B = 0.003841 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.934134 B = 7287.762754 C = 8083.345113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.039 3.961 3 Si 0.987 3.013 4 H -0.265 1.265 5 H -0.264 1.264 6 H -0.259 1.259 7 C -0.488 4.488 8 H 0.082 0.918 9 C 0.114 3.886 10 C -0.295 4.295 11 C 0.111 3.889 12 N -0.575 5.575 13 C 0.331 3.669 14 N -0.647 5.647 15 C 0.511 3.489 16 O -0.521 6.521 17 C -0.121 4.121 18 C -0.142 4.142 19 C 0.258 3.742 20 F -0.199 7.199 21 F -0.179 7.179 22 C -0.141 4.141 23 C -0.252 4.252 24 H 0.291 0.709 25 H 0.115 0.885 26 H 0.150 0.850 27 H 0.425 0.575 28 H 0.157 0.843 29 H 0.130 0.870 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.034 -1.818 7.166 11.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.177 4.177 3 Si 0.808 3.192 4 H -0.190 1.190 5 H -0.188 1.188 6 H -0.183 1.183 7 C -0.519 4.519 8 H 0.100 0.900 9 C 0.106 3.894 10 C -0.318 4.318 11 C -0.042 4.042 12 N -0.295 5.295 13 C 0.105 3.895 14 N -0.294 5.294 15 C 0.298 3.702 16 O -0.393 6.393 17 C -0.142 4.142 18 C -0.180 4.180 19 C 0.222 3.778 20 F -0.179 7.179 21 F -0.160 7.160 22 C -0.179 4.179 23 C -0.278 4.278 24 H 0.102 0.898 25 H 0.133 0.867 26 H 0.167 0.833 27 H 0.263 0.737 28 H 0.175 0.825 29 H 0.148 0.852 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.134 0.866 33 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.475 -3.248 7.023 12.233 hybrid contribution 0.544 1.695 -0.233 1.795 sum -8.931 -1.553 6.790 11.326 Atomic orbital electron populations 1.69770 1.08831 1.30826 1.35082 1.26758 0.95677 1.04361 0.90883 0.85115 0.79026 0.75632 0.79428 1.18962 1.18792 1.18311 1.19857 0.96181 0.90987 1.44847 0.89973 1.18016 0.91112 0.93225 0.87046 1.22142 1.05264 0.94539 1.09891 1.22223 0.90393 0.97481 0.94136 1.67346 1.16295 1.28767 1.17117 1.18467 0.87936 0.90324 0.92810 1.43450 1.23513 1.10595 1.51889 1.20941 0.84842 0.82818 0.81637 1.90773 1.62970 1.35193 1.50386 1.22630 0.91123 0.99946 1.00538 1.24084 0.91975 1.00455 1.01478 1.22031 0.84837 0.92888 0.78078 1.93001 1.70806 1.77466 1.76666 1.93021 1.89296 1.91083 1.42557 1.23973 0.89776 0.97022 1.07121 1.21598 1.01879 0.95816 1.08490 0.89764 0.86659 0.83264 0.73697 0.82498 0.85180 0.87168 0.87127 0.86633 0.85538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.14 10.83 21.84 0.24 -38.91 16 2 C 0.04 1.84 5.30 85.29 0.45 2.29 16 3 Si 0.99 35.24 29.57 68.60 2.03 37.27 16 4 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 5 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 6 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 7 C -0.49 -24.83 9.13 23.52 0.21 -24.61 16 8 H 0.08 4.01 7.87 -2.91 -0.02 3.99 16 9 C 0.11 5.98 5.58 -21.11 -0.12 5.86 16 10 C -0.29 -14.36 9.90 22.84 0.23 -14.14 16 11 C 0.11 5.26 11.15 84.50 0.94 6.20 16 12 N -0.58 -28.71 7.85 -193.53 -1.52 -30.23 16 13 C 0.33 15.52 7.42 132.75 0.98 16.51 16 14 N -0.65 -23.21 5.39 -308.66 -1.66 -24.87 16 15 C 0.51 17.05 7.31 87.66 0.64 17.69 16 16 O -0.52 -22.27 14.17 -3.03 -0.04 -22.32 16 17 C -0.12 -2.54 4.12 -11.01 -0.05 -2.59 16 18 C -0.14 -2.57 7.44 31.21 0.23 -2.33 16 19 C 0.26 5.14 3.28 31.21 0.10 5.24 16 20 F -0.20 -4.69 17.41 44.97 0.78 -3.91 16 21 F -0.18 -3.59 17.39 44.97 0.78 -2.81 16 22 C -0.14 -2.91 7.18 31.12 0.22 -2.68 16 23 C -0.25 -12.58 8.59 22.99 0.20 -12.38 16 24 H 0.29 12.43 8.29 -92.71 -0.77 11.66 16 25 H 0.12 5.14 8.06 -2.91 -0.02 5.12 16 26 H 0.15 6.05 8.06 -2.91 -0.02 6.03 16 27 H 0.42 12.01 8.70 -92.71 -0.81 11.20 16 28 H 0.16 2.34 8.14 -2.39 -0.02 2.33 16 29 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.11 2.23 8.09 -2.39 -0.02 2.21 16 31 H 0.11 2.71 7.45 -2.39 -0.02 2.69 16 32 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.13 6.24 6.27 -2.91 -0.02 6.22 16 Total: -1.00 -65.78 297.54 5.02 -60.76 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: 0.36 Total: 29.95 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 4.05 Total: -4.94 kcal Atomic # 7 Polarization: -91.06 SS G_CDS: -2.95 Total: -94.01 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.04 Total: -22.32 kcal Atomic # 9 Polarization: -8.29 SS G_CDS: 1.56 Total: -6.72 kcal Atomic # 14 Polarization: 35.24 SS G_CDS: 2.03 Total: 37.27 kcal Total: -65.78 5.02 -60.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336077968.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.854 kcal (2) G-P(sol) polarization free energy of solvation -65.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds