Wall clock time and date at job start Tue Mar 31 2020 05:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 115.55346 * 2 1 4 4 C 1.53007 * 117.49990 * 145.66375 * 2 1 3 5 5 H 1.09001 * 117.49197 * 359.97438 * 4 2 1 6 6 C 1.50696 * 117.50307 * 214.98331 * 4 2 1 7 7 O 1.21276 * 119.99725 * 0.08249 * 6 4 2 8 8 N 1.34773 * 119.99980 * 180.08925 * 6 4 2 9 9 C 1.39475 * 119.99891 * 176.04820 * 8 6 4 10 10 C 1.38591 * 119.58232 * 186.00690 * 9 8 6 11 11 C 1.40806 * 118.80018 * 179.78194 * 10 9 8 12 12 C 1.41545 * 121.00050 * 180.23824 * 11 10 9 13 13 H 1.08002 * 120.00163 * 201.42038 * 12 11 10 14 14 C 1.40029 * 119.99701 * 21.42632 * 12 11 10 15 15 N 1.30740 * 120.00145 * 12.36146 * 14 12 11 16 16 Si 1.86803 * 119.99628 * 192.36402 * 14 12 11 17 17 H 1.48496 * 109.47165 * 94.97139 * 16 14 12 18 18 H 1.48500 * 109.46929 * 214.96823 * 16 14 12 19 19 H 1.48493 * 109.47081 * 334.96881 * 16 14 12 20 20 C 1.41182 * 118.00377 * 0.47862 * 11 10 9 21 21 C 1.37583 * 119.01444 * 359.75595 * 20 11 10 22 22 N 1.32088 * 121.11229 * 0.02562 * 21 20 11 23 23 C 1.53006 * 60.02909 * 107.48208 * 4 2 1 24 24 F 1.39897 * 117.49804 * 107.50575 * 23 4 2 25 25 F 1.39899 * 117.49504 * 252.52321 * 23 4 2 26 26 H 1.08999 * 109.47193 * 274.32974 * 1 2 3 27 27 H 1.08999 * 109.47177 * 34.33245 * 1 2 3 28 28 H 1.09003 * 109.47414 * 154.33220 * 1 2 3 29 29 H 0.97000 * 120.00355 * 355.77178 * 8 6 4 30 30 H 1.08003 * 120.60043 * 359.97438 * 10 9 8 31 31 H 0.97006 * 119.99590 * 180.02562 * 15 14 12 32 32 H 1.08003 * 120.49268 * 179.78322 * 20 11 10 33 33 H 1.07996 * 119.44679 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1207 0.7655 5 1 1.6111 -1.8577 1.2695 6 6 3.5292 -0.7806 1.4613 7 8 3.9709 0.3474 1.4025 8 7 4.1945 -1.7299 2.1487 9 6 5.4313 -1.4371 2.7232 10 6 6.1654 -2.4499 3.3198 11 6 7.4140 -2.1369 3.8906 12 6 8.2046 -3.1358 4.5074 13 1 8.9622 -2.8581 5.2254 14 6 8.0047 -4.4841 4.1866 15 7 7.2696 -4.8087 3.1553 16 14 8.7884 -5.8191 5.2322 17 1 7.8150 -6.2837 6.2528 18 1 9.1801 -6.9600 4.3662 19 1 9.9930 -5.2747 5.9087 20 6 7.8512 -0.7957 3.8338 21 6 7.0501 0.1422 3.2243 22 7 5.8866 -0.1934 2.6966 23 6 2.2367 -1.1221 -0.7645 24 9 3.4370 -0.8076 -1.4106 25 9 1.4340 -2.0691 -1.4097 26 1 -0.3633 0.0776 1.0247 27 1 -0.3633 0.8486 -0.5796 28 1 -0.3634 -0.9263 -0.4451 29 1 3.8114 -2.6156 2.2474 30 1 5.7881 -3.4616 3.3438 31 1 7.1308 -5.7428 2.9333 32 1 8.8008 -0.5102 4.2620 33 1 7.3779 1.1700 3.1766 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336277784.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:16 Heat of formation + Delta-G solvation = -67.559664 kcal Electronic energy + Delta-G solvation = -21438.793392 eV Core-core repulsion = 17715.442871 eV Total energy + Delta-G solvation = -3723.350521 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.092 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.74756 -47.39898 -39.82697 -38.12663 -36.21025 -34.38676 -33.81310 -30.58376 -29.41272 -28.35886 -26.06461 -24.26934 -22.01728 -21.59768 -20.90567 -19.77610 -18.13972 -17.76087 -17.10599 -16.33776 -15.93000 -15.76212 -15.25756 -14.44534 -14.23172 -14.18621 -14.03797 -13.88451 -13.65104 -13.33368 -13.20235 -13.05828 -12.73646 -12.64607 -12.34554 -11.90016 -11.46891 -11.22536 -10.95419 -10.80583 -10.34319 -10.17087 -10.08651 -9.85000 -9.54828 -9.44550 -8.04838 -7.81608 -7.08420 -6.80913 -4.67653 2.18953 2.73681 2.82455 2.84645 2.98931 3.02808 3.21965 3.27842 3.66121 3.80904 4.08169 4.31637 4.51621 4.64446 4.89635 4.96851 5.25562 5.40033 5.46444 5.65162 5.68634 5.93732 5.94531 6.51868 6.59437 6.76434 6.89536 7.10261 7.33668 7.41219 7.69596 7.88918 8.13854 8.36182 8.62954 8.70995 8.77151 9.63558 10.02103 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.024386 B = 0.004255 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.920175 B = 6578.982707 C = 7276.020349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.115 4.115 3 H 0.144 0.856 4 C -0.189 4.189 5 H 0.146 0.854 6 C 0.528 3.472 7 O -0.467 6.467 8 N -0.648 5.648 9 C 0.333 3.667 10 C -0.243 4.243 11 C 0.139 3.861 12 C -0.449 4.449 13 H 0.083 0.917 14 C 0.075 3.925 15 N -0.790 5.790 16 Si 0.916 3.084 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.260 1.260 20 C -0.283 4.283 21 C 0.118 3.882 22 N -0.556 5.556 23 C 0.220 3.780 24 F -0.149 7.149 25 F -0.156 7.156 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.410 0.590 30 H 0.140 0.860 31 H 0.282 0.718 32 H 0.103 0.897 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.615 1.251 -3.761 12.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.134 4.134 3 H 0.161 0.839 4 C -0.211 4.211 5 H 0.164 0.836 6 C 0.311 3.689 7 O -0.336 6.336 8 N -0.294 5.294 9 C 0.109 3.891 10 C -0.269 4.269 11 C 0.130 3.870 12 C -0.480 4.480 13 H 0.101 0.899 14 C -0.144 4.144 15 N -0.416 5.416 16 Si 0.740 3.260 17 H -0.192 1.192 18 H -0.201 1.201 19 H -0.184 1.184 20 C -0.307 4.307 21 C -0.036 4.036 22 N -0.275 5.275 23 C 0.183 3.817 24 F -0.129 7.129 25 F -0.137 7.137 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.245 0.755 30 H 0.157 0.843 31 H 0.093 0.907 32 H 0.121 0.879 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.913 2.519 -4.436 12.959 hybrid contribution 0.827 -2.108 0.641 2.353 sum -11.085 0.411 -3.796 11.724 Atomic orbital electron populations 1.21429 0.90232 1.03484 1.03439 1.23742 0.97279 0.96318 0.96068 0.83870 1.23935 1.00130 1.04323 0.92747 0.83624 1.19167 0.83997 0.85777 0.79990 1.90800 1.65654 1.19564 1.57621 1.43267 1.19187 1.14704 1.52203 1.18179 0.85219 0.90995 0.94744 1.21806 0.96570 0.99039 1.09441 1.17594 0.90041 0.91464 0.87875 1.19645 1.16611 0.90233 1.21532 0.89935 1.25995 0.94015 1.00311 0.94069 1.69737 1.30602 1.20021 1.21211 0.86168 0.80233 0.79457 0.80146 1.19243 1.20107 1.18419 1.21894 1.01898 0.95300 1.11607 1.21744 0.89685 0.97873 0.94276 1.67177 1.16686 1.17691 1.25926 1.19881 0.81439 0.93885 0.86492 1.93096 1.44370 1.92456 1.82981 1.93010 1.71980 1.65492 1.83189 0.90491 0.90724 0.91262 0.75526 0.84306 0.90699 0.87931 0.85823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.03 10.16 37.15 0.38 -0.65 16 2 C -0.11 -1.33 5.91 -90.58 -0.54 -1.86 16 3 H 0.14 1.80 7.67 -51.93 -0.40 1.41 16 4 C -0.19 -2.51 5.89 -91.77 -0.54 -3.05 16 5 H 0.15 1.43 8.14 -51.93 -0.42 1.01 16 6 C 0.53 9.90 7.21 -10.99 -0.08 9.82 16 7 O -0.47 -10.56 14.51 5.56 0.08 -10.48 16 8 N -0.65 -12.72 5.39 -11.49 -0.06 -12.78 16 9 C 0.33 8.08 7.41 -154.70 -1.15 6.93 16 10 C -0.24 -6.14 8.66 -38.48 -0.33 -6.47 16 11 C 0.14 3.62 5.65 -106.55 -0.60 3.02 16 12 C -0.45 -11.42 9.15 -37.65 -0.34 -11.76 16 13 H 0.08 2.01 7.88 -52.49 -0.41 1.59 16 14 C 0.07 1.78 5.30 -17.35 -0.09 1.68 16 15 N -0.79 -19.21 10.53 55.55 0.58 -18.62 16 16 Si 0.92 17.69 29.58 -169.99 -5.03 12.66 16 17 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 18 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 19 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 20 C -0.28 -6.92 9.90 -38.70 -0.38 -7.30 16 21 C 0.12 2.84 11.15 -17.68 -0.20 2.65 16 22 N -0.56 -14.19 7.86 -12.52 -0.10 -14.29 16 23 C 0.22 3.04 5.14 -26.69 -0.14 2.90 16 24 F -0.15 -2.55 17.13 2.25 0.04 -2.51 16 25 F -0.16 -2.01 16.50 2.25 0.04 -1.98 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.53 7.10 -51.93 -0.37 0.16 16 29 H 0.41 6.54 8.70 -40.82 -0.36 6.18 16 30 H 0.14 3.47 5.84 -52.48 -0.31 3.16 16 31 H 0.28 6.19 8.29 -40.82 -0.34 5.85 16 32 H 0.10 2.29 8.06 -52.48 -0.42 1.87 16 33 H 0.12 2.59 8.06 -52.49 -0.42 2.16 16 LS Contribution 300.36 15.07 4.53 4.53 Total: -1.00 -31.08 300.36 -7.02 -38.11 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -3.09 Total: 9.46 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -4.01 Total: -4.10 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.42 Total: -45.69 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.08 Total: -10.48 kcal Atomic # 9 Polarization: -4.56 SS G_CDS: 0.08 Total: -4.49 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.66 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.08 -7.02 -38.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336277784.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.453 kcal (2) G-P(sol) polarization free energy of solvation -31.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds