Wall clock time and date at job start Tue Mar 31 2020 05:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 115.56025 * 2 1 4 4 C 1.52992 * 117.50521 * 214.30737 * 2 1 3 5 5 H 1.09009 * 117.51659 * 359.97438 * 4 2 1 6 6 C 1.50697 * 117.50124 * 145.01795 * 4 2 1 7 7 O 1.21277 * 120.00282 * 0.02562 * 6 4 2 8 8 N 1.34779 * 120.00001 * 180.02562 * 6 4 2 9 9 C 1.39474 * 119.99846 * 184.72033 * 8 6 4 10 10 C 1.38600 * 119.57796 * 174.60621 * 9 8 6 11 11 C 1.40808 * 118.79393 * 180.02562 * 10 9 8 12 12 C 1.41548 * 120.99270 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00156 * 331.72295 * 12 11 10 14 14 C 1.40031 * 119.99715 * 151.73322 * 12 11 10 15 15 N 1.30739 * 120.00140 * 350.11587 * 14 12 11 16 16 Si 1.86798 * 119.99768 * 170.11845 * 14 12 11 17 17 H 1.48498 * 109.47517 * 59.99851 * 16 14 12 18 18 H 1.48500 * 109.47172 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47089 * 299.99256 * 16 14 12 20 20 C 1.41172 * 118.00846 * 359.97438 * 11 10 9 21 21 C 1.37588 * 119.01645 * 0.02562 * 20 11 10 22 22 N 1.32086 * 121.10734 * 359.72115 * 21 20 11 23 23 C 1.52995 * 60.00185 * 252.51395 * 4 2 1 24 24 F 1.39896 * 117.50267 * 107.48834 * 23 4 2 25 25 F 1.39904 * 117.49421 * 252.48641 * 23 4 2 26 26 H 1.09002 * 109.47158 * 205.68540 * 1 2 3 27 27 H 1.09002 * 109.47742 * 325.68882 * 1 2 3 28 28 H 1.09000 * 109.46780 * 85.69412 * 1 2 3 29 29 H 0.97003 * 120.00106 * 4.99308 * 8 6 4 30 30 H 1.08001 * 120.60557 * 359.97438 * 10 9 8 31 31 H 0.97002 * 120.00162 * 180.02562 * 15 14 12 32 32 H 1.07999 * 120.49409 * 179.97438 * 20 11 10 33 33 H 1.08000 * 119.44945 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1209 -0.7648 5 1 1.6116 -1.8590 -1.2679 6 6 3.5293 -0.7810 -1.4607 7 8 3.9720 0.3465 -1.4008 8 7 4.1936 -1.7301 -2.1496 9 6 5.4377 -1.4424 -2.7105 10 6 6.1638 -2.4536 -3.3197 11 6 7.4181 -2.1449 -3.8802 12 6 8.1989 -3.1416 -4.5130 13 1 8.1093 -4.1733 -4.2065 14 6 9.0877 -2.7899 -5.5363 15 7 9.0602 -1.5838 -6.0402 16 14 10.3125 -4.0440 -6.1816 17 1 9.5808 -5.2147 -6.7286 18 1 11.1328 -3.4278 -7.2552 19 1 11.1976 -4.4866 -5.0742 20 6 7.8736 -0.8116 -3.7919 21 6 7.0817 0.1243 -3.1674 22 7 5.9081 -0.2052 -2.6585 23 6 2.2364 -1.1209 0.7651 24 9 1.4339 -2.0674 1.4111 25 9 3.4367 -0.8058 1.4111 26 1 -0.3633 -0.9261 0.4454 27 1 -0.3635 0.8488 0.5793 28 1 -0.3633 0.0772 -1.0248 29 1 3.8046 -2.6120 -2.2586 30 1 5.7750 -3.4603 -3.3632 31 1 9.6756 -1.3403 -6.7494 32 1 8.8299 -0.5305 -4.2078 33 1 7.4231 1.1464 -3.0963 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336277785.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:19 Heat of formation + Delta-G solvation = -67.704015 kcal Electronic energy + Delta-G solvation = -21233.688841 eV Core-core repulsion = 17510.332060 eV Total energy + Delta-G solvation = -3723.356781 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.092 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.81263 -47.46185 -39.89908 -38.15685 -36.27398 -34.51671 -33.62742 -30.71645 -29.45183 -28.35273 -26.03790 -24.33529 -21.92462 -21.68859 -21.03736 -19.77344 -18.19454 -17.89708 -17.07721 -16.31665 -16.05607 -15.81971 -15.15944 -14.54091 -14.29227 -14.21016 -14.08283 -13.92464 -13.71206 -13.38906 -13.25126 -13.14998 -12.82177 -12.44636 -12.36378 -11.95394 -11.46470 -11.26568 -11.01211 -10.85707 -10.42920 -10.21979 -10.04660 -9.84758 -9.56524 -9.40851 -8.05560 -7.81129 -7.09795 -6.80786 -4.66300 2.13902 2.71919 2.78909 2.83581 3.00561 3.02782 3.18960 3.21570 3.61918 3.84088 4.02278 4.25192 4.45665 4.66236 4.83442 4.91391 5.20932 5.35653 5.41142 5.62939 5.65324 5.89648 5.92958 6.48933 6.51300 6.72519 6.87490 7.09311 7.34110 7.41893 7.67341 7.84783 8.11304 8.40160 8.56418 8.71319 8.74671 9.61343 10.08416 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.038478 B = 0.003524 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.507678 B = 7942.633016 C = 8215.981842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.114 4.114 3 H 0.144 0.856 4 C -0.189 4.189 5 H 0.146 0.854 6 C 0.528 3.472 7 O -0.463 6.463 8 N -0.652 5.652 9 C 0.345 3.655 10 C -0.298 4.298 11 C 0.146 3.854 12 C -0.458 4.458 13 H 0.081 0.919 14 C 0.076 3.924 15 N -0.792 5.792 16 Si 0.916 3.084 17 H -0.265 1.265 18 H -0.277 1.277 19 H -0.263 1.263 20 C -0.216 4.216 21 C 0.102 3.898 22 N -0.552 5.552 23 C 0.220 3.780 24 F -0.156 7.156 25 F -0.149 7.149 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.408 0.592 30 H 0.103 0.897 31 H 0.283 0.717 32 H 0.129 0.871 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.341 -1.083 6.983 14.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.134 4.134 3 H 0.162 0.838 4 C -0.212 4.212 5 H 0.164 0.836 6 C 0.310 3.690 7 O -0.332 6.332 8 N -0.297 5.297 9 C 0.117 3.883 10 C -0.323 4.323 11 C 0.138 3.862 12 C -0.489 4.489 13 H 0.099 0.901 14 C -0.143 4.143 15 N -0.418 5.418 16 Si 0.740 3.260 17 H -0.189 1.189 18 H -0.202 1.202 19 H -0.187 1.187 20 C -0.239 4.239 21 C -0.049 4.049 22 N -0.271 5.271 23 C 0.183 3.817 24 F -0.137 7.137 25 F -0.129 7.129 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.243 0.757 30 H 0.121 0.879 31 H 0.094 0.906 32 H 0.147 0.853 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.423 0.568 7.337 14.439 hybrid contribution 0.966 -1.943 -0.766 2.301 sum -11.457 -1.375 6.570 13.278 Atomic orbital electron populations 1.21432 0.90184 1.03505 1.03487 1.23735 0.97335 0.96345 0.95959 0.83825 1.23936 1.00109 1.04421 0.92700 0.83599 1.19177 0.84012 0.85764 0.80021 1.90816 1.65448 1.19485 1.57428 1.43292 1.18697 1.15076 1.52664 1.17971 0.84906 0.91145 0.94233 1.21251 0.98141 0.97756 1.15194 1.17590 0.88948 0.92797 0.86880 1.19525 1.18532 0.95252 1.15614 0.90126 1.25948 0.96587 0.96106 0.95637 1.69737 1.32023 1.19426 1.20596 0.86238 0.80084 0.80749 0.78902 1.18920 1.20205 1.18734 1.22271 1.02195 0.94568 1.04903 1.21920 0.89742 0.98292 0.94939 1.67187 1.16485 1.17384 1.26032 1.19872 0.81469 0.93958 0.86423 1.93011 1.72000 1.65507 1.83147 1.93098 1.44372 1.92456 1.82991 0.91263 0.90682 0.90458 0.75688 0.87900 0.90552 0.85288 0.85739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.97 10.16 37.15 0.38 -0.59 16 2 C -0.11 -1.26 5.90 -90.63 -0.54 -1.79 16 3 H 0.14 1.74 7.67 -51.92 -0.40 1.34 16 4 C -0.19 -2.34 5.90 -91.78 -0.54 -2.89 16 5 H 0.15 1.29 8.14 -51.92 -0.42 0.87 16 6 C 0.53 9.44 7.21 -10.99 -0.08 9.36 16 7 O -0.46 -10.23 14.51 5.56 0.08 -10.15 16 8 N -0.65 -11.94 5.39 -11.49 -0.06 -12.00 16 9 C 0.34 8.06 7.41 -154.70 -1.15 6.91 16 10 C -0.30 -7.09 9.73 -38.48 -0.37 -7.47 16 11 C 0.15 3.82 5.58 -106.55 -0.59 3.22 16 12 C -0.46 -11.68 9.13 -37.65 -0.34 -12.02 16 13 H 0.08 1.95 7.87 -52.49 -0.41 1.54 16 14 C 0.08 1.84 5.30 -17.34 -0.09 1.74 16 15 N -0.79 -19.81 10.83 55.55 0.60 -19.20 16 16 Si 0.92 17.95 29.57 -169.99 -5.03 12.92 16 17 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 18 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 19 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 20 C -0.22 -5.59 8.75 -38.71 -0.34 -5.93 16 21 C 0.10 2.54 11.15 -17.68 -0.20 2.34 16 22 N -0.55 -14.04 7.85 -12.52 -0.10 -14.14 16 23 C 0.22 2.84 5.13 -26.73 -0.14 2.70 16 24 F -0.16 -1.87 16.50 2.25 0.04 -1.84 16 25 F -0.15 -2.41 17.13 2.25 0.04 -2.37 16 26 H 0.07 0.49 7.10 -51.93 -0.37 0.12 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.41 5.72 8.70 -40.82 -0.36 5.36 16 30 H 0.10 2.19 8.06 -52.49 -0.42 1.76 16 31 H 0.28 6.45 8.29 -40.82 -0.34 6.11 16 32 H 0.13 3.37 6.27 -52.49 -0.33 3.04 16 33 H 0.13 2.77 8.06 -52.49 -0.42 2.35 16 LS Contribution 300.90 15.07 4.53 4.53 Total: -1.00 -31.33 300.90 -7.01 -38.33 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -3.11 Total: 8.32 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -4.00 Total: -4.41 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.44 Total: -45.35 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.08 Total: -10.15 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.08 Total: -4.20 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.33 -7.01 -38.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336277785.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.369 kcal (2) G-P(sol) polarization free energy of solvation -31.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds