Wall clock time and date at job start Tue Mar 31 2020 05:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.35038 * 126.38357 * 2 1 4 4 H 0.96993 * 124.88428 * 0.02562 * 3 2 1 5 5 N 1.28471 * 110.22397 * 180.31973 * 3 2 1 6 6 C 1.31805 * 110.07464 * 359.72958 * 5 3 2 7 7 C 1.47712 * 126.51520 * 179.97438 * 6 5 3 8 8 O 1.21570 * 120.00049 * 180.02562 * 7 6 5 9 9 N 1.34776 * 120.00042 * 0.02562 * 7 6 5 10 10 C 1.46504 * 119.99804 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.46802 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.46873 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47098 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99745 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99941 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99875 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99785 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47335 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47331 * 120.00292 * 17 15 13 20 20 H 1.48497 * 109.47207 * 240.00143 * 17 15 13 21 21 C 1.35365 * 126.38422 * 179.86485 * 2 1 3 22 22 N 1.48007 * 127.24732 * 359.96598 * 21 2 1 23 23 O 1.21803 * 119.99745 * 269.70786 * 22 21 2 24 24 O 1.21799 * 120.00052 * 89.43689 * 22 21 2 25 25 H 1.08998 * 109.47137 * 270.14037 * 1 2 3 26 26 H 1.09000 * 109.47012 * 30.13410 * 1 2 3 27 27 H 1.08996 * 109.47305 * 150.13536 * 1 2 3 28 28 H 0.97003 * 120.00245 * 359.97438 * 9 7 6 29 29 H 1.08993 * 109.47461 * 299.99967 * 10 9 7 30 30 H 1.09002 * 109.46792 * 60.00346 * 10 9 7 31 31 H 1.09001 * 109.47368 * 299.99630 * 11 10 9 32 32 H 1.08997 * 109.47585 * 60.00119 * 11 10 9 33 33 H 1.09003 * 109.47020 * 299.99642 * 12 11 10 34 34 H 1.09002 * 109.47058 * 59.99995 * 12 11 10 35 35 H 0.96998 * 119.99505 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3081 1.0871 0.0000 4 1 1.9966 2.0057 0.0004 5 7 3.5420 0.7296 -0.0067 6 6 3.6320 -0.5854 -0.0056 7 6 4.8764 -1.3812 -0.0124 8 8 4.8213 -2.5956 -0.0110 9 7 6.0730 -0.7610 -0.0202 10 6 7.3071 -1.5503 -0.0263 11 6 8.5139 -0.6098 -0.0339 12 6 9.8029 -1.4342 -0.0410 13 6 10.9916 -0.5079 -0.0490 14 1 10.8426 0.5618 -0.0487 15 6 12.2693 -1.0260 -0.0558 16 7 12.4507 -2.3286 -0.0557 17 14 13.7427 0.1222 -0.0651 18 1 13.2726 1.5308 -0.0630 19 1 14.5703 -0.1247 1.1429 20 1 14.5565 -0.1267 -1.2820 21 6 2.3100 -1.0898 0.0026 22 7 1.8929 -2.5098 0.0066 23 8 1.7270 -3.0928 1.0631 24 8 1.7109 -3.0941 -1.0465 25 1 -0.3633 0.0025 1.0276 26 1 -0.3633 0.8888 -0.5159 27 1 -0.3634 -0.8911 -0.5117 28 1 6.1170 0.2081 -0.0217 29 1 7.3416 -2.1778 0.8642 30 1 7.3312 -2.1800 -0.9157 31 1 8.4798 0.0180 -0.9243 32 1 8.4897 0.0196 0.8556 33 1 9.8373 -2.0623 0.8492 34 1 9.8269 -2.0633 -0.9308 35 1 13.3495 -2.6931 -0.0608 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351566438.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:50 Heat of formation + Delta-G solvation = 21.138621 kcal Electronic energy + Delta-G solvation = -21188.904831 eV Core-core repulsion = 17612.780822 eV Total energy + Delta-G solvation = -3576.124008 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.89687 -41.87523 -39.53046 -36.53322 -35.61184 -34.00118 -33.38511 -33.04495 -31.23563 -28.75238 -27.08067 -26.36305 -24.76674 -22.77313 -21.93403 -20.85647 -20.04749 -19.31890 -18.86188 -18.08639 -17.35831 -16.92722 -16.81069 -16.44433 -15.59779 -15.36527 -14.47159 -14.33073 -14.08732 -13.89336 -13.72615 -13.36043 -12.32729 -12.10584 -11.87183 -11.83899 -11.72987 -11.31956 -11.14813 -10.94409 -10.81478 -10.63933 -10.47465 -10.42184 -10.12571 -9.91934 -9.48942 -9.13829 -8.98468 -8.39025 -6.03298 -4.06545 0.43869 0.69066 0.81749 0.99788 2.00617 2.86146 2.95401 3.29082 3.36623 3.39936 3.60603 3.65430 3.90500 4.41472 4.44367 4.58025 4.69970 4.88519 5.03832 5.32622 5.60488 5.69715 5.90384 6.08429 6.18346 6.25656 6.53109 6.68916 6.78182 6.93905 7.43902 7.52335 7.61580 7.73240 7.95007 8.01539 8.35907 9.00184 9.57801 11.08053 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.034777 B = 0.002882 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.947265 B = 9714.379918 C =10370.024379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.095 3.905 3 N -0.362 5.362 4 H 0.461 0.539 5 N -0.228 5.228 6 C 0.056 3.944 7 C 0.585 3.415 8 O -0.519 6.519 9 N -0.700 5.700 10 C 0.114 3.886 11 C -0.121 4.121 12 C 0.024 3.976 13 C -0.523 4.523 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.893 5.893 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.107 4.107 22 N 0.058 4.942 23 O -0.125 6.125 24 O -0.127 6.127 25 H 0.100 0.900 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.407 0.593 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.594 9.799 0.160 28.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.035 4.035 3 N -0.077 5.077 4 H 0.310 0.690 5 N -0.062 5.062 6 C -0.109 4.109 7 C 0.367 3.633 8 O -0.393 6.393 9 N -0.350 5.350 10 C -0.008 4.008 11 C -0.159 4.159 12 C -0.014 4.014 13 C -0.561 4.561 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.532 5.532 17 Si 0.721 3.279 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.200 4.200 22 N 0.592 4.408 23 O -0.349 6.349 24 O -0.351 6.351 25 H 0.118 0.882 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.242 0.758 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -25.535 10.477 0.153 27.601 hybrid contribution 0.242 0.610 -0.009 0.657 sum -25.293 11.087 0.143 27.617 Atomic orbital electron populations 1.20702 0.84351 1.05765 1.05255 1.20906 0.95918 0.85336 1.01380 1.43157 1.02561 1.09602 1.52398 0.69050 1.73854 1.01117 1.12753 1.18483 1.22069 0.93318 0.89445 1.06034 1.16769 0.81734 0.86462 0.78363 1.90912 1.86354 1.12279 1.49777 1.46040 1.05389 1.11223 1.72338 1.21846 0.81428 0.94818 1.02701 1.21913 0.94540 0.98310 1.01119 1.19041 0.89434 0.95128 0.97805 1.21224 0.90884 0.93022 1.50963 0.92577 1.25034 0.99146 0.95048 0.95255 1.69974 1.21854 1.10835 1.50517 0.86521 0.82748 0.81001 0.77623 1.19778 1.20984 1.20978 1.20495 0.93976 0.83595 1.21961 1.42095 0.97705 1.00554 1.00492 1.94575 1.53083 1.66666 1.20609 1.94574 1.52823 1.66573 1.21090 0.88203 0.88793 0.88810 0.75838 0.91040 0.91035 0.92531 0.92527 0.96143 0.96141 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.32 10.44 36.01 0.38 0.05 16 2 C 0.09 0.68 7.23 -82.20 -0.59 0.09 16 3 N -0.36 -2.09 6.83 33.50 0.23 -1.86 16 4 H 0.46 0.45 8.96 -190.44 -1.71 -1.26 16 5 N -0.23 -2.25 11.92 33.42 0.40 -1.85 16 6 C 0.06 0.74 7.13 -82.77 -0.59 0.15 16 7 C 0.59 9.65 7.82 -12.39 -0.10 9.55 16 8 O -0.52 -10.51 16.47 5.30 0.09 -10.42 16 9 N -0.70 -10.63 5.55 -61.29 -0.34 -10.97 16 10 C 0.11 2.02 5.67 -4.04 -0.02 2.00 16 11 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 12 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 13 C -0.52 -14.55 9.11 -34.44 -0.31 -14.87 16 14 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 17 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 C -0.11 -1.32 6.75 -79.74 -0.54 -1.86 16 22 N 0.06 0.86 3.94 34.07 0.13 0.99 16 23 O -0.12 -1.95 19.25 -29.46 -0.57 -2.52 16 24 O -0.13 -1.98 19.25 -29.46 -0.57 -2.54 16 25 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.09 0.01 8.14 -51.93 -0.42 -0.41 16 27 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.41 5.19 8.20 -40.82 -0.33 4.85 16 29 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 323.71 15.07 4.88 4.88 Total: -1.00 -36.07 323.71 -7.58 -43.65 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: -5.39 Total: -4.32 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -2.16 Total: -5.41 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 1.16 Total: -39.76 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -1.05 Total: -15.48 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -36.07 -7.58 -43.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351566438.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.787 kcal (2) G-P(sol) polarization free energy of solvation -36.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds